Wall clock time and date at job start Mon Mar 30 2020 01:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47269 * 240.00052 * 3 2 1 5 5 H 1.48503 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46977 * 119.99746 * 3 2 1 7 7 C 1.37873 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47043 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47154 * 180.02562 * 10 9 7 12 12 C 1.38363 * 120.00194 * 179.97438 * 11 10 9 13 13 N 1.32634 * 120.26311 * 5.40586 * 12 11 10 14 14 N 1.28279 * 122.20749 * 179.68871 * 13 12 11 15 15 C 1.31962 * 122.64223 * 0.58951 * 14 13 12 16 16 Cl 1.73598 * 119.92727 * 179.69224 * 15 14 13 17 17 C 1.38623 * 120.15300 * 359.42118 * 15 14 13 18 18 C 1.40046 * 117.89032 * 0.27433 * 17 15 14 19 19 C 1.47724 * 121.18352 * 180.02562 * 18 17 15 20 20 N 1.34770 * 120.00140 * 354.36552 * 19 18 17 21 21 O 1.21570 * 119.99898 * 174.36790 * 19 18 17 22 22 H 0.96996 * 119.99923 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46745 * 60.00334 * 9 7 2 24 24 H 1.08995 * 109.47428 * 300.00237 * 9 7 2 25 25 H 1.08990 * 109.47535 * 60.00021 * 10 9 7 26 26 H 1.09003 * 109.46727 * 299.99952 * 10 9 7 27 27 H 0.97001 * 119.99772 * 359.97438 * 11 10 9 28 28 H 1.08000 * 121.05794 * 180.29202 * 17 15 14 29 29 H 0.97002 * 120.00198 * 359.97438 * 20 19 18 30 30 H 0.97000 * 120.00511 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.2048 -6.1290 -0.0018 13 7 3.5267 -6.1377 0.1061 14 7 4.2048 -7.2266 0.1154 15 6 3.6432 -8.4158 0.0076 16 17 4.6299 -9.8441 0.0206 17 6 2.2665 -8.5276 -0.1104 18 6 1.5116 -7.3481 -0.1163 19 6 0.0398 -7.3825 -0.2379 20 7 -0.5909 -8.5527 -0.4596 21 8 -0.6026 -6.3552 -0.1380 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6043 0.8893 26 1 2.8721 -3.6042 -0.8906 27 1 0.5430 -4.9308 -0.0011 28 1 1.7911 -9.4937 -0.1949 29 1 -0.0783 -9.3724 -0.5397 30 1 -1.5573 -8.5754 -0.5398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273348404.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:02 Heat of formation + Delta-G solvation = 12.199661 kcal Electronic energy + Delta-G solvation = -17635.481089 eV Core-core repulsion = 14492.071669 eV Total energy + Delta-G solvation = -3143.409420 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.33129 -39.38047 -37.04584 -36.27484 -34.47164 -33.35927 -32.75906 -31.28042 -28.85250 -26.01032 -24.99348 -23.15456 -21.85122 -20.79330 -18.64165 -18.15181 -17.65742 -16.53090 -16.11982 -15.88795 -15.77884 -14.82854 -14.68016 -14.45280 -14.26048 -13.95811 -13.46847 -12.39289 -12.27178 -11.70183 -11.51989 -11.21495 -11.19877 -10.79855 -10.76784 -10.62494 -10.44143 -10.12140 -9.90046 -9.63261 -9.59851 -9.29504 -8.42534 -7.80863 -6.06896 -4.10775 0.15509 0.95973 1.59357 2.52152 3.00882 3.30707 3.32998 3.36949 3.41579 3.51063 4.05277 4.38110 4.39322 4.43590 4.51325 4.96325 5.29689 5.34404 5.54557 6.17929 6.26744 6.38118 6.69149 6.83457 7.16205 7.58005 7.61170 7.65372 7.91116 7.99240 8.27870 8.69957 8.94826 9.53895 11.04617 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.004162 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.348641 B = 6726.291767 C = 7815.450778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.115 3.885 11 N -0.662 5.662 12 C 0.388 3.612 13 N -0.276 5.276 14 N -0.153 5.153 15 C 0.022 3.978 16 Cl -0.023 7.023 17 C -0.020 4.020 18 C -0.212 4.212 19 C 0.580 3.420 20 N -0.845 5.845 21 O -0.526 6.526 22 H 0.263 0.737 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.428 0.572 28 H 0.155 0.845 29 H 0.401 0.599 30 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.318 -22.492 -0.992 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.079 0.921 9 C -0.025 4.025 10 C -0.008 4.008 11 N -0.296 5.296 12 C 0.140 3.860 13 N -0.135 5.135 14 N -0.003 5.003 15 C -0.152 4.152 16 Cl 0.005 6.995 17 C -0.050 4.050 18 C -0.232 4.232 19 C 0.365 3.635 20 N -0.409 5.409 21 O -0.402 6.402 22 H 0.072 0.928 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.276 0.724 28 H 0.173 0.827 29 H 0.231 0.769 30 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 2.287 -20.578 -0.748 20.718 hybrid contribution -1.237 -0.601 -0.224 1.394 sum 1.050 -21.179 -0.972 21.227 Atomic orbital electron populations 1.69962 1.06120 1.27013 1.50023 1.25004 0.94883 0.99426 0.94941 0.86553 0.79483 0.82590 0.78789 1.20086 1.21261 1.20060 1.20972 0.93206 0.90173 1.51783 0.92112 1.19324 0.94162 0.90844 0.98191 1.22045 0.96334 0.80892 1.01484 1.46159 1.11551 1.02614 1.69246 1.20246 0.90793 0.87183 0.87769 1.73499 1.03329 1.16482 1.20216 1.72537 1.31192 0.93994 1.02555 1.22734 0.89802 0.90948 1.11706 1.98383 1.70850 1.33047 1.97227 1.22030 0.92309 0.98742 0.91881 1.20376 0.94627 0.93210 1.15035 1.17711 0.86132 0.83913 0.75728 1.43564 1.11987 1.09323 1.76002 1.90652 1.66636 1.32458 1.50432 0.92753 0.95797 0.95775 0.91544 0.91823 0.72361 0.82715 0.76931 0.75774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.11 2.46 5.65 -4.04 -0.02 2.43 16 11 N -0.66 -12.61 5.59 -60.10 -0.34 -12.95 16 12 C 0.39 6.57 7.57 -154.84 -1.17 5.39 16 13 N -0.28 -4.90 10.74 31.37 0.34 -4.57 16 14 N -0.15 -2.43 11.46 32.85 0.38 -2.06 16 15 C 0.02 0.27 7.36 -17.35 -0.13 0.14 16 16 Cl -0.02 -0.23 29.13 -51.86 -1.51 -1.74 16 17 C -0.02 -0.20 9.46 -38.76 -0.37 -0.56 16 18 C -0.21 -2.77 5.93 -104.41 -0.62 -3.38 16 19 C 0.58 7.10 8.05 -12.39 -0.10 7.00 16 20 N -0.84 -5.68 8.83 30.50 0.27 -5.41 16 21 O -0.53 -8.65 14.64 5.30 0.08 -8.57 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 26 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.43 8.33 5.13 -40.82 -0.21 8.12 16 28 H 0.16 0.77 6.64 -52.49 -0.35 0.43 16 29 H 0.40 1.36 7.04 -40.82 -0.29 1.07 16 30 H 0.41 2.22 8.93 -40.82 -0.36 1.86 16 LS Contribution 284.57 15.07 4.29 4.29 Total: -1.00 -32.73 284.57 -6.19 -38.92 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -2.44 Total: 3.59 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -2.96 Total: -2.16 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: 1.38 Total: -50.87 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.08 Total: -8.57 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.74 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.73 -6.19 -38.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273348404.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.117 kcal (2) G-P(sol) polarization free energy of solvation -32.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds