Wall clock time and date at job start Mon Mar 30 2020 01:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99905 * 2 1 4 4 H 1.48502 * 109.47269 * 240.00052 * 3 2 1 5 5 H 1.48503 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.46977 * 119.99746 * 3 2 1 7 7 C 1.37873 * 120.00181 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00012 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99971 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47043 * 180.02562 * 9 7 2 11 11 N 1.46501 * 109.47154 * 180.02562 * 10 9 7 12 12 C 1.38363 * 120.00194 * 179.97438 * 11 10 9 13 13 N 1.32634 * 120.26311 * 5.40586 * 12 11 10 14 14 N 1.28279 * 122.20749 * 179.68871 * 13 12 11 15 15 C 1.31962 * 122.64223 * 0.58951 * 14 13 12 16 16 Cl 1.73598 * 119.92727 * 179.69224 * 15 14 13 17 17 C 1.38623 * 120.15300 * 359.42118 * 15 14 13 18 18 C 1.40046 * 117.89032 * 0.27433 * 17 15 14 19 19 C 1.47724 * 121.18352 * 180.02562 * 18 17 15 20 20 N 1.34770 * 120.00140 * 354.36552 * 19 18 17 21 21 O 1.21570 * 119.99898 * 174.36790 * 19 18 17 22 22 H 0.96996 * 119.99923 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46745 * 60.00334 * 9 7 2 24 24 H 1.08995 * 109.47428 * 300.00237 * 9 7 2 25 25 H 1.08990 * 109.47535 * 60.00021 * 10 9 7 26 26 H 1.09003 * 109.46727 * 299.99952 * 10 9 7 27 27 H 0.97001 * 119.99772 * 359.97438 * 11 10 9 28 28 H 1.08000 * 121.05794 * 180.29202 * 17 15 14 29 29 H 0.97002 * 120.00198 * 359.97438 * 20 19 18 30 30 H 0.97000 * 120.00511 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 7 1.5130 -4.9308 -0.0012 12 6 2.2048 -6.1290 -0.0018 13 7 3.5267 -6.1377 0.1061 14 7 4.2048 -7.2266 0.1154 15 6 3.6432 -8.4158 0.0076 16 17 4.6299 -9.8441 0.0206 17 6 2.2665 -8.5276 -0.1104 18 6 1.5116 -7.3481 -0.1163 19 6 0.0398 -7.3825 -0.2379 20 7 -0.5909 -8.5527 -0.4596 21 8 -0.6026 -6.3552 -0.1380 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5566 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6043 0.8893 26 1 2.8721 -3.6042 -0.8906 27 1 0.5430 -4.9308 -0.0011 28 1 1.7911 -9.4937 -0.1949 29 1 -0.0783 -9.3724 -0.5397 30 1 -1.5573 -8.5754 -0.5398 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273348404.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:13:02 Heat of formation + Delta-G solvation = -13.806288 kcal Electronic energy + Delta-G solvation = -17636.608791 eV Core-core repulsion = 14492.071669 eV Total energy + Delta-G solvation = -3144.537123 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.062 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.44377 -40.40319 -38.16109 -37.53654 -35.45055 -35.28178 -33.77808 -32.86908 -30.49521 -27.17756 -26.69213 -24.52959 -23.21202 -22.24183 -19.51212 -19.27983 -19.10720 -18.12836 -17.39998 -16.95136 -16.82759 -16.54513 -15.85794 -15.77063 -15.57695 -15.53068 -14.62650 -14.22778 -13.64157 -13.31279 -12.91914 -12.77303 -12.52846 -12.43536 -12.41233 -11.83928 -11.70043 -11.60644 -11.43639 -11.25265 -10.88164 -10.67673 -10.59675 -9.16226 -8.24437 -6.36803 -0.86106 -0.13840 0.60189 1.41427 1.45133 1.52010 1.52973 2.00664 2.16945 2.40342 2.41983 3.03757 3.09825 3.29664 3.53698 3.58218 3.94440 4.29193 4.37528 4.45088 4.62191 4.81497 5.33104 5.51112 5.66301 5.67931 5.88567 6.11594 6.19639 6.43035 6.77343 7.11519 7.32897 7.53546 8.87924 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.004162 C = 0.003582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.348641 B = 6726.291767 C = 7815.450778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.022 3.978 10 C 0.141 3.859 11 N -0.682 5.682 12 C 0.369 3.631 13 N -0.315 5.315 14 N -0.188 5.188 15 C 0.032 3.968 16 Cl 0.007 6.993 17 C 0.008 3.992 18 C -0.207 4.207 19 C 0.578 3.422 20 N -0.810 5.810 21 O -0.573 6.573 22 H 0.266 0.734 23 H 0.000 1.000 24 H -0.001 1.001 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.424 0.576 28 H 0.215 0.785 29 H 0.422 0.578 30 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 -25.104 -1.239 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.016 4.016 10 C 0.017 3.983 11 N -0.319 5.319 12 C 0.123 3.877 13 N -0.172 5.172 14 N -0.034 5.034 15 C -0.144 4.144 16 Cl 0.035 6.965 17 C -0.021 4.021 18 C -0.227 4.227 19 C 0.363 3.637 20 N -0.375 5.375 21 O -0.453 6.453 22 H 0.075 0.925 23 H 0.018 0.982 24 H 0.018 0.982 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.272 0.728 28 H 0.232 0.768 29 H 0.255 0.745 30 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.914 -23.296 -1.002 23.499 hybrid contribution -1.392 -0.139 -0.158 1.408 sum 1.523 -23.435 -1.160 23.513 Atomic orbital electron populations 1.70099 1.07870 1.28134 1.50895 1.25980 0.95785 1.03468 0.94248 0.85405 0.78178 0.77570 0.79324 1.19039 1.20697 1.19055 1.21418 0.93779 0.91409 1.51750 0.91524 1.19118 0.94309 0.92427 0.95722 1.21433 0.94822 0.81157 1.00841 1.45794 1.11078 1.02492 1.72510 1.20446 0.91117 0.87589 0.88549 1.73409 1.03920 1.18001 1.21837 1.72438 1.31741 0.94884 1.04381 1.23162 0.91296 0.90947 1.09021 1.98406 1.70372 1.30793 1.96934 1.22577 0.91084 0.99970 0.88484 1.20543 0.95464 0.92739 1.13930 1.17678 0.85653 0.84628 0.75764 1.43303 1.12727 1.08324 1.73142 1.90643 1.67228 1.34520 1.52931 0.92543 0.98200 0.98237 0.92239 0.92373 0.72793 0.76789 0.74484 0.74437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 2 C 0.00 0.21 5.46 84.65 0.46 0.68 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.55 -31.57 9.11 25.60 0.23 -31.33 16 8 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 9 C 0.02 1.19 5.09 29.85 0.15 1.34 16 10 C 0.14 6.41 5.65 86.38 0.49 6.90 16 11 N -0.68 -27.40 5.59 -344.06 -1.92 -29.32 16 12 C 0.37 12.71 7.57 133.60 1.01 13.73 16 13 N -0.32 -11.39 10.74 -54.66 -0.59 -11.97 16 14 N -0.19 -5.84 11.46 -49.99 -0.57 -6.41 16 15 C 0.03 0.70 7.36 84.77 0.62 1.32 16 16 Cl 0.01 0.12 29.13 -2.72 -0.08 0.04 16 17 C 0.01 0.13 9.46 22.80 0.22 0.35 16 18 C -0.21 -5.06 5.93 -19.73 -0.12 -5.17 16 19 C 0.58 13.19 8.05 86.75 0.70 13.89 16 20 N -0.81 -7.93 8.83 -175.69 -1.55 -9.48 16 21 O -0.57 -19.08 14.64 -3.94 -0.06 -19.14 16 22 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 23 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 24 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 25 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 26 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 27 H 0.42 17.59 5.13 -92.71 -0.48 17.11 16 28 H 0.22 0.73 6.64 -2.91 -0.02 0.71 16 29 H 0.42 0.58 7.04 -92.71 -0.65 -0.07 16 30 H 0.42 3.14 8.93 -92.71 -0.83 2.31 16 Total: -1.00 -75.80 284.57 0.58 -75.22 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -0.73 Total: 9.49 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 3.77 Total: 1.70 kcal Atomic # 7 Polarization: -109.68 SS G_CDS: -4.35 Total: -114.03 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.06 Total: -19.14 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: 0.12 SS G_CDS: -0.08 Total: 0.04 kcal Total: -75.80 0.58 -75.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273348404.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.416 kcal (2) G-P(sol) polarization free energy of solvation -75.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds