Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.39750 * 119.99838 * 180.02562 * 11 10 9 13 13 C 1.38887 * 120.07833 * 359.72969 * 12 11 10 14 14 C 1.38122 * 119.93512 * 179.72249 * 13 12 11 15 15 C 1.38285 * 120.09498 * 0.52478 * 14 13 12 16 16 N 1.48011 * 119.92061 * 179.74270 * 15 14 13 17 17 O 1.21798 * 119.99754 * 180.02562 * 16 15 14 18 18 O 1.21802 * 119.99962 * 0.02972 * 16 15 14 19 19 C 1.38267 * 120.15947 * 359.77231 * 15 14 13 20 20 C 1.38211 * 120.06013 * 359.94917 * 19 15 14 21 21 Cl 1.73602 * 120.04924 * 179.97438 * 20 19 15 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 0.96998 * 120.00192 * 359.97438 * 11 10 9 28 28 H 1.07998 * 120.03009 * 359.97438 * 13 12 11 29 29 H 1.07998 * 119.94722 * 180.24818 * 14 13 12 30 30 H 1.07999 * 119.97211 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.2117 -6.1410 -0.0007 13 6 3.6006 -6.1429 -0.0054 14 6 4.2883 -7.3407 0.0008 15 6 3.5959 -8.5377 0.0008 16 7 4.3368 -9.8191 0.0017 17 8 3.7284 -10.8742 0.0011 18 8 5.5548 -9.8184 0.0031 19 6 2.2133 -8.5405 -0.0008 20 6 1.5185 -7.3457 -0.0012 21 17 -0.2175 -7.3495 -0.0039 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.5430 -4.9308 -0.0011 28 1 4.1423 -5.2086 -0.0098 29 1 5.3683 -7.3423 0.0013 30 1 1.6756 -9.4772 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273362442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = 0.350603 kcal Electronic energy + Delta-G solvation = -17303.435340 eV Core-core repulsion = 14127.219355 eV Total energy + Delta-G solvation = -3176.215985 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.05113 -39.87628 -36.74232 -36.44645 -36.30134 -33.42423 -31.35479 -31.22700 -29.11270 -26.04130 -24.69492 -23.40186 -22.01246 -21.03995 -19.35333 -18.59209 -17.73113 -17.42408 -16.58649 -15.98924 -15.43629 -14.85854 -14.69751 -14.24771 -14.07643 -13.65991 -13.51263 -12.42774 -11.98439 -11.93688 -11.52447 -11.46614 -11.40134 -11.36708 -11.07629 -11.02143 -10.94161 -10.81814 -10.13090 -9.87993 -9.54644 -9.37955 -8.62555 -7.83504 -6.27492 -4.33005 -0.01061 0.74048 1.42493 1.44859 1.93952 3.15891 3.17987 3.18822 3.23869 3.28490 4.25366 4.25986 4.51703 4.68157 4.76570 5.09798 5.24983 5.35554 5.56705 5.63922 5.76731 5.84543 6.02493 6.31427 6.47508 6.86358 7.29817 7.32116 7.44312 7.68245 7.75595 8.03518 8.71883 9.33387 10.83792 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.003806 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.024092 B = 7354.836718 C = 8306.412692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.110 3.890 11 N -0.701 5.701 12 C 0.286 3.714 13 C -0.192 4.192 14 C 0.004 3.996 15 C -0.117 4.117 16 N 0.048 4.952 17 O -0.183 6.183 18 O -0.179 6.179 19 C 0.008 3.992 20 C -0.131 4.131 21 Cl -0.047 7.047 22 H 0.265 0.735 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.409 0.591 28 H 0.156 0.844 29 H 0.154 0.846 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.451 -13.178 -0.007 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.012 4.012 11 N -0.321 5.321 12 C 0.168 3.832 13 C -0.216 4.216 14 C -0.017 4.017 15 C -0.205 4.205 16 N 0.561 4.439 17 O -0.394 6.394 18 O -0.391 6.391 19 C -0.013 4.013 20 C -0.164 4.164 21 Cl -0.019 7.019 22 H 0.075 0.925 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.247 0.753 28 H 0.174 0.826 29 H 0.172 0.828 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.858 -12.187 -0.009 12.517 hybrid contribution -0.021 0.617 0.004 0.618 sum 2.836 -11.570 -0.005 11.912 Atomic orbital electron populations 1.69930 1.06173 1.27350 1.49376 1.24997 0.94905 0.99561 0.94638 0.86542 0.79534 0.82480 0.78822 1.20013 1.21111 1.20018 1.20910 0.93095 0.90134 1.52682 0.92194 1.19309 0.94122 0.90737 0.98291 1.22117 0.96918 0.81361 1.00793 1.45931 1.10026 1.03402 1.72701 1.18074 0.91828 0.85926 0.87325 1.20666 0.91157 0.98852 1.10888 1.20795 1.01637 0.89110 0.90156 1.20441 0.91569 0.83562 1.24910 1.43403 1.01025 1.02661 0.96829 1.94508 1.70125 1.20032 1.54759 1.94508 0.95720 1.94285 1.54614 1.20435 0.91225 0.98464 0.91209 1.19978 0.85780 0.92473 1.18174 1.98380 1.07592 1.98483 1.97421 0.92521 0.95684 0.95693 0.91803 0.91796 0.75331 0.82615 0.82820 0.82587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 13.29 55.43 0.74 -23.95 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 7 C -0.53 -13.31 9.11 -34.44 -0.31 -13.63 16 8 H 0.06 1.43 7.74 -52.48 -0.41 1.03 16 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 10 C 0.11 1.83 4.85 -4.04 -0.02 1.81 16 11 N -0.70 -10.10 5.69 -58.60 -0.33 -10.43 16 12 C 0.29 3.67 6.65 -83.73 -0.56 3.11 16 13 C -0.19 -2.21 9.31 -39.38 -0.37 -2.58 16 14 C 0.00 0.04 9.55 -39.61 -0.38 -0.34 16 15 C -0.12 -1.47 6.85 -79.92 -0.55 -2.02 16 16 N 0.05 0.68 4.45 33.97 0.15 0.83 16 17 O -0.18 -2.73 18.44 -29.46 -0.54 -3.27 16 18 O -0.18 -2.65 18.44 -29.46 -0.54 -3.19 16 19 C 0.01 0.09 9.33 -39.58 -0.37 -0.28 16 20 C -0.13 -1.60 6.34 -39.31 -0.25 -1.85 16 21 Cl -0.05 -0.56 27.60 -51.86 -1.43 -1.99 16 22 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 23 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.02 7.94 -51.93 -0.41 0.61 16 26 H 0.06 1.02 7.96 -51.93 -0.41 0.61 16 27 H 0.41 5.91 7.15 -40.82 -0.29 5.62 16 28 H 0.16 1.62 6.74 -52.49 -0.35 1.27 16 29 H 0.15 1.44 7.60 -52.49 -0.40 1.04 16 30 H 0.16 1.64 7.60 -52.49 -0.40 1.25 16 LS Contribution 288.63 15.07 4.35 4.35 Total: -1.00 -27.20 288.63 -8.33 -35.53 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -2.66 Total: 1.25 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: -3.04 Total: -14.10 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.55 Total: -33.54 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -1.09 Total: -6.46 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.43 Total: -1.99 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.20 -8.33 -35.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273362442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.883 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds