Wall clock time and date at job start Mon Mar 30 2020 00:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.39750 * 119.99838 * 180.02562 * 11 10 9 13 13 C 1.38887 * 120.07833 * 359.72969 * 12 11 10 14 14 C 1.38122 * 119.93512 * 179.72249 * 13 12 11 15 15 C 1.38285 * 120.09498 * 0.52478 * 14 13 12 16 16 N 1.48011 * 119.92061 * 179.74270 * 15 14 13 17 17 O 1.21798 * 119.99754 * 180.02562 * 16 15 14 18 18 O 1.21802 * 119.99962 * 0.02972 * 16 15 14 19 19 C 1.38267 * 120.15947 * 359.77231 * 15 14 13 20 20 C 1.38211 * 120.06013 * 359.94917 * 19 15 14 21 21 Cl 1.73602 * 120.04924 * 179.97438 * 20 19 15 22 22 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 24 24 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 25 25 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 26 26 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 27 27 H 0.96998 * 120.00192 * 359.97438 * 11 10 9 28 28 H 1.07998 * 120.03009 * 359.97438 * 13 12 11 29 29 H 1.07998 * 119.94722 * 180.24818 * 14 13 12 30 30 H 1.07999 * 119.97211 * 179.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 7 1.5129 -4.9308 -0.0012 12 6 2.2117 -6.1410 -0.0007 13 6 3.6006 -6.1429 -0.0054 14 6 4.2883 -7.3407 0.0008 15 6 3.5959 -8.5377 0.0008 16 7 4.3368 -9.8191 0.0017 17 8 3.7284 -10.8742 0.0011 18 8 5.5548 -9.8184 0.0031 19 6 2.2133 -8.5405 -0.0008 20 6 1.5185 -7.3457 -0.0012 21 17 -0.2175 -7.3495 -0.0039 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8904 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6042 -0.8905 26 1 2.8721 -3.6043 0.8895 27 1 0.5430 -4.9308 -0.0011 28 1 4.1423 -5.2086 -0.0098 29 1 5.3683 -7.3423 0.0013 30 1 1.6756 -9.4772 -0.0013 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273362442.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:28 Heat of formation + Delta-G solvation = -13.575723 kcal Electronic energy + Delta-G solvation = -17304.039231 eV Core-core repulsion = 14127.219355 eV Total energy + Delta-G solvation = -3176.819876 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.13195 -40.88845 -37.71185 -37.54805 -37.51260 -35.19326 -32.71518 -32.22928 -30.48697 -27.40701 -26.03432 -24.59828 -23.17299 -22.40749 -20.38038 -19.69105 -19.01820 -18.50692 -18.19034 -17.20285 -16.53066 -16.33464 -16.10487 -15.28907 -15.19236 -14.84258 -14.57862 -14.16703 -13.36321 -13.12939 -12.83754 -12.75485 -12.60355 -12.53261 -12.51254 -12.40794 -12.21724 -12.06229 -11.61535 -11.45044 -11.42392 -10.58780 -10.30329 -8.91957 -8.25189 -6.36186 -1.08173 -0.18592 0.39420 0.40062 0.96443 1.43839 1.44742 1.52505 2.07793 2.19777 2.42600 3.11219 3.32349 3.60764 3.71122 3.78876 4.23247 4.33782 4.44041 4.46421 4.68660 4.73653 4.81988 5.07944 5.32553 5.42586 5.53320 5.67025 5.88957 6.09413 6.33720 6.61587 6.79976 7.34514 8.86622 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.028799 B = 0.003806 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.024092 B = 7354.836718 C = 8306.412692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.072 0.928 9 C 0.016 3.984 10 C 0.130 3.870 11 N -0.708 5.708 12 C 0.279 3.721 13 C -0.186 4.186 14 C 0.013 3.987 15 C -0.122 4.122 16 N 0.048 4.952 17 O -0.201 6.201 18 O -0.185 6.185 19 C 0.010 3.990 20 C -0.132 4.132 21 Cl -0.045 7.045 22 H 0.264 0.736 23 H 0.001 0.999 24 H 0.001 0.999 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.407 0.593 28 H 0.172 0.828 29 H 0.175 0.825 30 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.055 -13.220 -0.009 14.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.194 4.194 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.580 4.580 8 H 0.091 0.909 9 C -0.021 4.021 10 C 0.008 3.992 11 N -0.329 5.329 12 C 0.164 3.836 13 C -0.210 4.210 14 C -0.008 4.008 15 C -0.210 4.210 16 N 0.558 4.442 17 O -0.409 6.409 18 O -0.397 6.397 19 C -0.010 4.010 20 C -0.164 4.164 21 Cl -0.016 7.016 22 H 0.073 0.927 23 H 0.019 0.981 24 H 0.019 0.981 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.244 0.756 28 H 0.189 0.811 29 H 0.193 0.807 30 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.478 -12.289 -0.011 13.079 hybrid contribution -0.528 0.564 0.005 0.772 sum 3.950 -11.725 -0.006 12.372 Atomic orbital electron populations 1.70065 1.07830 1.28011 1.51150 1.25900 0.95646 1.03317 0.94571 0.85515 0.78219 0.78126 0.79305 1.19047 1.21509 1.19058 1.21455 0.93995 0.91328 1.51210 0.90948 1.19144 0.94603 0.92434 0.95957 1.21688 0.95309 0.80401 1.01839 1.45663 1.09839 1.03243 1.74157 1.18214 0.92423 0.85315 0.87683 1.20846 0.90529 0.99590 1.10018 1.21014 1.02681 0.88246 0.88828 1.20607 0.91836 0.83180 1.25340 1.43616 1.01017 1.03075 0.96507 1.94507 1.70090 1.20730 1.55572 1.94495 0.96088 1.94440 1.54683 1.20532 0.91119 0.98776 0.90595 1.19997 0.86001 0.92382 1.18050 1.98386 1.07390 1.98461 1.97409 0.92732 0.98053 0.98063 0.90720 0.90720 0.75573 0.81098 0.80730 0.81561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.46 13.29 21.45 0.28 -52.18 16 2 C 0.00 0.23 5.46 84.65 0.46 0.69 16 3 Si 0.96 40.53 29.54 68.60 2.03 42.56 16 4 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.54 -26.91 9.11 25.60 0.23 -26.68 16 8 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.02 0.72 5.09 29.85 0.15 0.87 16 10 C 0.13 4.14 4.85 86.38 0.42 4.56 16 11 N -0.71 -19.54 5.69 -339.30 -1.93 -21.47 16 12 C 0.28 6.62 6.65 38.21 0.25 6.87 16 13 C -0.19 -3.76 9.31 22.40 0.21 -3.55 16 14 C 0.01 0.25 9.55 22.25 0.21 0.46 16 15 C -0.12 -2.81 6.85 36.39 0.25 -2.56 16 16 N 0.05 1.29 4.45 -46.42 -0.21 1.08 16 17 O -0.20 -5.78 18.44 18.89 0.35 -5.43 16 18 O -0.19 -5.15 18.44 18.88 0.35 -4.80 16 19 C 0.01 0.23 9.33 22.27 0.21 0.44 16 20 C -0.13 -3.00 6.34 22.44 0.14 -2.86 16 21 Cl -0.05 -1.01 27.60 -2.72 -0.08 -1.09 16 22 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 23 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 25 H 0.07 2.22 7.94 -2.39 -0.02 2.20 16 26 H 0.07 2.22 7.96 -2.39 -0.02 2.20 16 27 H 0.41 11.61 7.15 -92.71 -0.66 10.94 16 28 H 0.17 2.95 6.74 -2.91 -0.02 2.94 16 29 H 0.18 2.67 7.60 -2.91 -0.02 2.65 16 30 H 0.17 3.25 7.60 -2.91 -0.02 3.22 16 Total: -1.00 -57.53 288.63 3.86 -53.67 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.52 Total: 9.41 kcal Atomic # 6 Polarization: -24.29 SS G_CDS: 2.54 Total: -21.75 kcal Atomic # 7 Polarization: -70.71 SS G_CDS: -1.85 Total: -72.57 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.70 Total: -10.23 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -57.53 3.86 -53.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273362442.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.092 kcal (2) G-P(sol) polarization free energy of solvation -57.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds