Wall clock time and date at job start Mon Mar 30 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46817 * 299.99638 * 3 2 1 6 6 H 1.48502 * 109.47301 * 59.99608 * 3 2 1 7 7 C 1.37878 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47219 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47633 * 180.02562 * 10 9 7 12 12 S 1.65593 * 120.00375 * 163.94478 * 11 10 9 13 13 O 1.42100 * 106.40458 * 309.96627 * 12 11 10 14 14 O 1.42100 * 106.40416 * 177.04389 * 12 11 10 15 15 C 1.76205 * 107.21809 * 63.50564 * 12 11 10 16 16 C 1.38123 * 120.03500 * 244.28711 * 15 12 11 17 17 C 1.38272 * 120.07178 * 180.29364 * 16 15 12 18 18 C 1.38306 * 120.14719 * 359.44707 * 17 16 15 19 19 C 1.38080 * 120.07770 * 0.55106 * 18 17 16 20 20 C 1.38887 * 120.03746 * 64.30302 * 15 12 11 21 21 N 1.39674 * 120.07377 * 359.96178 * 20 15 12 22 22 H 0.96994 * 119.99903 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47281 * 60.00095 * 9 7 2 24 24 H 1.09002 * 109.47324 * 300.00197 * 9 7 2 25 25 H 1.09005 * 109.47256 * 60.00062 * 10 9 7 26 26 H 1.09002 * 109.46973 * 300.00216 * 10 9 7 27 27 H 0.97006 * 119.99871 * 343.94924 * 11 10 9 28 28 H 1.08003 * 119.96841 * 0.02562 * 16 15 12 29 29 H 1.08000 * 119.92145 * 179.69609 * 17 16 15 30 30 H 1.08001 * 119.96262 * 180.27138 * 18 17 16 31 31 H 1.07999 * 120.04002 * 179.69859 * 19 18 17 32 32 H 0.97001 * 120.00325 * 354.24553 * 21 20 15 33 33 H 0.96999 * 119.99822 * 174.24828 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0033 12 16 2.2923 -6.3372 -0.3922 13 8 2.9749 -6.0879 -1.6134 14 8 1.3420 -7.3815 -0.2322 15 6 3.5358 -6.6049 0.8272 16 6 4.8698 -6.5892 0.4693 17 6 5.8460 -6.8053 1.4245 18 6 5.4910 -7.0263 2.7428 19 6 4.1593 -7.0433 3.1074 20 6 3.1757 -6.8323 2.1491 21 7 1.8276 -6.8483 2.5145 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5575 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 2.8718 -3.6036 0.8927 26 1 2.8718 -3.6051 -0.8873 27 1 0.5709 -4.9471 0.2352 28 1 5.1506 -6.4123 -0.5585 29 1 6.8881 -6.7973 1.1411 30 1 6.2561 -7.1904 3.4872 31 1 3.8826 -7.2208 4.1361 32 1 1.1460 -6.6185 1.8637 33 1 1.5732 -7.0892 3.4189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274516728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:31 Heat of formation + Delta-G solvation = -59.976449 kcal Electronic energy + Delta-G solvation = -18538.754485 eV Core-core repulsion = 15497.799324 eV Total energy + Delta-G solvation = -3040.955161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.41578 -37.09752 -35.61842 -35.50172 -34.59795 -32.75064 -31.22904 -29.16134 -28.75600 -24.51330 -23.36790 -22.37049 -21.16991 -19.32714 -18.01164 -17.41558 -16.99084 -16.69469 -16.28772 -15.31743 -14.80922 -14.59878 -14.38684 -13.97805 -13.94342 -13.80928 -13.41545 -12.56469 -12.43185 -11.88492 -11.82442 -11.73180 -11.53845 -11.29488 -11.13785 -10.89966 -10.70204 -10.60171 -10.42413 -9.60603 -9.39664 -9.26119 -8.94589 -8.42666 -7.87628 -6.09640 -4.12742 0.64773 0.96322 1.48101 3.24203 3.27370 3.35376 3.39682 3.53546 3.64090 3.99173 4.40253 4.51878 4.82132 4.94707 5.21508 5.27455 5.34204 5.58180 5.75851 5.79862 5.89961 6.16024 6.20692 6.39796 6.47527 6.67448 6.71363 7.15650 7.35042 7.43447 7.54342 7.63814 7.89258 8.27187 8.93410 9.52031 11.01875 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.005241 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.790909 B = 5341.177216 C = 5775.336070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.060 0.940 9 C 0.018 3.982 10 C 0.121 3.879 11 N -1.116 6.116 12 S 2.694 3.306 13 O -0.962 6.962 14 O -0.975 6.975 15 C -0.747 4.747 16 C 0.023 3.977 17 C -0.200 4.200 18 C -0.023 4.023 19 C -0.217 4.217 20 C 0.314 3.686 21 N -0.865 5.865 22 H 0.261 0.739 23 H 0.026 0.974 24 H 0.023 0.977 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.413 0.587 28 H 0.142 0.858 29 H 0.127 0.873 30 H 0.127 0.873 31 H 0.127 0.873 32 H 0.401 0.599 33 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 -14.274 6.439 17.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.078 0.922 9 C -0.021 4.021 10 C -0.003 4.003 11 N -0.877 5.877 12 S 2.784 3.216 13 O -0.952 6.952 14 O -0.965 6.965 15 C -0.840 4.840 16 C 0.004 3.996 17 C -0.221 4.221 18 C -0.042 4.042 19 C -0.240 4.240 20 C 0.204 3.796 21 N -0.403 5.403 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.248 0.752 28 H 0.159 0.841 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.232 0.768 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.203 -14.689 5.670 17.315 hybrid contribution 0.047 1.158 0.977 1.516 sum 7.250 -13.531 6.647 16.728 Atomic orbital electron populations 1.69966 1.06092 1.26752 1.50397 1.25002 0.94880 0.99392 0.95033 0.86479 0.80134 0.83440 0.77617 1.19597 1.20901 1.21011 1.21129 0.93265 0.90483 1.51304 0.92184 1.19288 0.94054 0.90606 0.98134 1.21632 0.95953 0.82277 1.00480 1.55564 1.21663 1.22688 1.87826 1.01708 0.73351 0.72493 0.74063 1.93551 1.75461 1.85025 1.41132 1.93551 1.60941 1.54999 1.87020 1.30303 1.14080 1.28292 1.11290 1.20759 0.90188 0.88532 1.00167 1.21014 0.99491 1.08167 0.93395 1.21144 0.95369 0.91556 0.96150 1.20666 0.92611 1.12083 0.98674 1.17148 0.84761 0.86522 0.91181 1.42893 1.03997 1.76589 1.16851 0.92896 0.95552 0.95893 0.92929 0.91287 0.75195 0.84076 0.85509 0.85554 0.85496 0.76829 0.76385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.52 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 9 C 0.02 0.44 5.12 -27.89 -0.14 0.29 16 10 C 0.12 2.39 6.15 -4.04 -0.02 2.36 16 11 N -1.12 -18.36 5.45 -10.61 -0.06 -18.42 16 12 S 2.69 43.60 4.98 -107.50 -0.54 43.07 16 13 O -0.96 -18.21 16.48 -57.17 -0.94 -19.15 16 14 O -0.98 -16.69 16.47 -57.17 -0.94 -17.63 16 15 C -0.75 -10.96 5.87 -39.38 -0.23 -11.19 16 16 C 0.02 0.32 9.54 -39.61 -0.38 -0.06 16 17 C -0.20 -2.28 10.04 -39.54 -0.40 -2.68 16 18 C -0.02 -0.24 10.04 -39.61 -0.40 -0.64 16 19 C -0.22 -2.44 9.90 -39.38 -0.39 -2.83 16 20 C 0.31 4.14 6.72 -83.79 -0.56 3.58 16 21 N -0.86 -9.83 8.84 32.41 0.29 -9.54 16 22 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.07 1.39 7.77 -51.93 -0.40 0.98 16 27 H 0.41 6.10 8.66 -34.46 -0.30 5.80 16 28 H 0.14 1.81 7.33 -52.48 -0.38 1.42 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.40 4.79 5.96 -40.82 -0.24 4.55 16 33 H 0.41 3.34 8.85 -40.82 -0.36 2.97 16 LS Contribution 297.52 15.07 4.48 4.48 Total: -1.00 -33.52 297.52 -8.70 -42.22 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -3.77 Total: 8.26 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: -2.94 Total: -24.14 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.96 Total: -53.19 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -1.88 Total: -36.78 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 43.60 SS G_CDS: -0.54 Total: 43.07 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.52 -8.70 -42.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274516728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.761 kcal (2) G-P(sol) polarization free energy of solvation -33.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds