Wall clock time and date at job start Mon Mar 30 2020 01:32:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86798 * 120.00117 * 2 1
4 4 H 1.48499 * 109.47141 * 179.97438 * 3 2 1
5 5 H 1.48506 * 109.46817 * 299.99638 * 3 2 1
6 6 H 1.48502 * 109.47301 * 59.99608 * 3 2 1
7 7 C 1.37878 * 119.99702 * 179.97438 * 2 1 3
8 8 H 1.07996 * 119.99778 * 180.02562 * 7 2 1
9 9 C 1.50695 * 120.00114 * 359.97438 * 7 2 1
10 10 C 1.52997 * 109.47219 * 180.02562 * 9 7 2
11 11 N 1.46498 * 109.47633 * 180.02562 * 10 9 7
12 12 S 1.65593 * 120.00375 * 163.94478 * 11 10 9
13 13 O 1.42100 * 106.40458 * 309.96627 * 12 11 10
14 14 O 1.42100 * 106.40416 * 177.04389 * 12 11 10
15 15 C 1.76205 * 107.21809 * 63.50564 * 12 11 10
16 16 C 1.38123 * 120.03500 * 244.28711 * 15 12 11
17 17 C 1.38272 * 120.07178 * 180.29364 * 16 15 12
18 18 C 1.38306 * 120.14719 * 359.44707 * 17 16 15
19 19 C 1.38080 * 120.07770 * 0.55106 * 18 17 16
20 20 C 1.38887 * 120.03746 * 64.30302 * 15 12 11
21 21 N 1.39674 * 120.07377 * 359.96178 * 20 15 12
22 22 H 0.96994 * 119.99903 * 0.02562 * 1 2 3
23 23 H 1.08997 * 109.47281 * 60.00095 * 9 7 2
24 24 H 1.09002 * 109.47324 * 300.00197 * 9 7 2
25 25 H 1.09005 * 109.47256 * 60.00062 * 10 9 7
26 26 H 1.09002 * 109.46973 * 300.00216 * 10 9 7
27 27 H 0.97006 * 119.99871 * 343.94924 * 11 10 9
28 28 H 1.08003 * 119.96841 * 0.02562 * 16 15 12
29 29 H 1.08000 * 119.92145 * 179.69609 * 17 16 15
30 30 H 1.08001 * 119.96262 * 180.27138 * 18 17 16
31 31 H 1.07999 * 120.04002 * 179.69859 * 19 18 17
32 32 H 0.97001 * 120.00325 * 354.24553 * 21 20 15
33 33 H 0.96999 * 119.99822 * 174.24828 * 21 20 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3963 -1.2126
6 1 1.8904 2.3965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4991 0.0017
10 6 2.2452 -3.6621 0.0027
11 7 1.5127 -4.9308 0.0033
12 16 2.2923 -6.3372 -0.3922
13 8 2.9749 -6.0879 -1.6134
14 8 1.3420 -7.3815 -0.2322
15 6 3.5358 -6.6049 0.8272
16 6 4.8698 -6.5892 0.4693
17 6 5.8460 -6.8053 1.4245
18 6 5.4910 -7.0263 2.7428
19 6 4.1593 -7.0433 3.1074
20 6 3.1757 -6.8323 2.1491
21 7 1.8276 -6.8483 2.5145
22 1 -0.4850 0.8400 -0.0004
23 1 0.6240 -2.5575 -0.8880
24 1 0.6246 -2.5563 0.8919
25 1 2.8718 -3.6036 0.8927
26 1 2.8718 -3.6051 -0.8873
27 1 0.5709 -4.9471 0.2352
28 1 5.1506 -6.4123 -0.5585
29 1 6.8881 -6.7973 1.1411
30 1 6.2561 -7.1904 3.4872
31 1 3.8826 -7.2208 4.1361
32 1 1.1460 -6.6185 1.8637
33 1 1.5732 -7.0892 3.4189
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000274516728.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:32:31
Heat of formation + Delta-G solvation = -85.713815 kcal
Electronic energy + Delta-G solvation = -18539.870541 eV
Core-core repulsion = 15497.799324 eV
Total energy + Delta-G solvation = -3042.071217 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 270.082 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.32365 -38.44743 -37.09743 -36.99149 -35.57084 -34.71729 -32.14878 -31.02353
-29.65934 -26.44131 -24.31961 -23.31696 -22.96730 -20.61567 -19.21985 -18.61585
-18.21096 -18.09842 -17.71179 -16.70560 -16.45226 -15.78643 -15.70576 -15.41871
-15.10006 -14.84660 -14.47630 -14.36609 -13.44479 -13.41250 -13.26140 -13.23220
-13.12886 -13.00027 -12.44022 -12.41866 -12.35446 -11.79469 -11.65862 -11.51175
-11.29503 -10.63135 -10.35680 -10.30947 -8.77848 -8.20999 -6.31329 -0.61198
-0.01056 0.57406 1.42633 1.44028 1.56635 1.98574 2.43252 2.55497
2.70989 2.81743 3.14168 3.36555 3.87431 4.11295 4.20543 4.41856
4.46294 4.53723 4.66854 4.82757 4.92949 4.94337 5.03714 5.32259
5.49710 5.53560 5.63429 5.80358 5.82959 5.99982 6.22397 6.25963
6.64473 6.84278 7.37972 8.91244
Molecular weight = 270.08amu
Principal moments of inertia in cm(-1)
A = 0.021687 B = 0.005241 C = 0.004847
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.790909 B = 5341.177216 C = 5775.336070
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.003 3.997
3 Si 0.964 3.036
4 H -0.261 1.261
5 H -0.281 1.281
6 H -0.278 1.278
7 C -0.543 4.543
8 H 0.066 0.934
9 C 0.021 3.979
10 C 0.139 3.861
11 N -1.113 6.113
12 S 2.707 3.293
13 O -0.995 6.995
14 O -0.987 6.987
15 C -0.764 4.764
16 C -0.002 4.002
17 C -0.200 4.200
18 C -0.017 4.017
19 C -0.219 4.219
20 C 0.299 3.701
21 N -0.863 5.863
22 H 0.264 0.736
23 H 0.001 0.999
24 H 0.010 0.990
25 H 0.065 0.935
26 H 0.063 0.937
27 H 0.420 0.580
28 H 0.138 0.862
29 H 0.153 0.847
30 H 0.165 0.835
31 H 0.156 0.844
32 H 0.396 0.604
33 H 0.421 0.579
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.296 -14.502 8.205 19.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.570 5.570
2 C -0.195 4.195
3 Si 0.789 3.211
4 H -0.184 1.184
5 H -0.207 1.207
6 H -0.204 1.204
7 C -0.581 4.581
8 H 0.084 0.916
9 C -0.018 4.018
10 C 0.013 3.987
11 N -0.875 5.875
12 S 2.801 3.199
13 O -0.985 6.985
14 O -0.977 6.977
15 C -0.861 4.861
16 C -0.021 4.021
17 C -0.221 4.221
18 C -0.036 4.036
19 C -0.242 4.242
20 C 0.188 3.812
21 N -0.402 5.402
22 H 0.073 0.927
23 H 0.019 0.981
24 H 0.029 0.971
25 H 0.084 0.916
26 H 0.081 0.919
27 H 0.256 0.744
28 H 0.156 0.844
29 H 0.171 0.829
30 H 0.183 0.817
31 H 0.174 0.826
32 H 0.226 0.774
33 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges 9.131 -14.927 7.426 19.009
hybrid contribution -0.533 1.142 0.496 1.354
sum 8.598 -13.785 7.921 18.075
Atomic orbital electron populations
1.70086 1.07711 1.27799 1.51433 1.25911 0.95740 1.03226 0.94619
0.85406 0.79220 0.78799 0.77673 1.18434 1.20663 1.20362 1.21589
0.93872 0.91786 1.50896 0.91568 1.19155 0.94416 0.91955 0.96235
1.21234 0.94789 0.81848 1.00827 1.55381 1.22174 1.21900 1.88000
1.01003 0.73189 0.71822 0.73855 1.93501 1.75987 1.85343 1.43660
1.93527 1.61888 1.54976 1.87328 1.29903 1.13684 1.31112 1.11351
1.20934 0.90401 0.89936 1.00878 1.21386 1.00276 1.06908 0.93496
1.21652 0.96014 0.89440 0.96488 1.21100 0.92567 1.10960 0.99612
1.17430 0.85819 0.86868 0.91105 1.42937 1.03454 1.76233 1.17572
0.92721 0.98076 0.97131 0.91634 0.91866 0.74444 0.84438 0.82940
0.81721 0.82614 0.77389 0.74726
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16
2 C 0.00 0.19 5.46 84.65 0.46 0.65 16
3 Si 0.96 43.06 29.54 68.60 2.03 45.08 16
4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16
5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16
6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16
7 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16
8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16
9 C 0.02 1.05 5.12 29.85 0.15 1.21 16
10 C 0.14 5.51 6.15 86.38 0.53 6.05 16
11 N -1.11 -37.27 5.45 -187.49 -1.02 -38.30 16
12 S 2.71 88.89 4.98 -56.49 -0.28 88.61 16
13 O -0.99 -38.67 16.48 -128.00 -2.11 -40.78 16
14 O -0.99 -34.12 16.47 -128.00 -2.11 -36.23 16
15 C -0.76 -21.91 5.87 22.40 0.13 -21.78 16
16 C 0.00 -0.04 9.54 22.25 0.21 0.17 16
17 C -0.20 -4.00 10.04 22.29 0.22 -3.78 16
18 C -0.02 -0.29 10.04 22.25 0.22 -0.06 16
19 C -0.22 -4.19 9.90 22.40 0.22 -3.97 16
20 C 0.30 7.38 6.72 38.21 0.26 7.63 16
21 N -0.86 -18.50 8.84 -51.37 -0.45 -18.95 16
22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16
23 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16
24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16
25 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16
26 H 0.06 2.58 7.77 -2.39 -0.02 2.56 16
27 H 0.42 12.74 8.66 -96.74 -0.84 11.91 16
28 H 0.14 3.55 7.33 -2.91 -0.02 3.53 16
29 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16
30 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16
31 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16
32 H 0.40 9.28 5.96 -92.71 -0.55 8.72 16
33 H 0.42 6.15 8.85 -92.71 -0.82 5.33 16
Total: -1.00 -71.81 297.52 -2.07 -73.87
By element:
Atomic # 1 Polarization: 25.57 SS G_CDS: -1.05 Total: 24.52 kcal
Atomic # 6 Polarization: -45.96 SS G_CDS: 2.65 Total: -43.31 kcal
Atomic # 7 Polarization: -110.59 SS G_CDS: -1.19 Total: -111.78 kcal
Atomic # 8 Polarization: -72.79 SS G_CDS: -4.22 Total: -77.00 kcal
Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal
Atomic # 16 Polarization: 88.89 SS G_CDS: -0.28 Total: 88.61 kcal
Total: -71.81 -2.07 -73.87 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000274516728.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.840 kcal
(2) G-P(sol) polarization free energy of solvation -71.808 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.648 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds