Wall clock time and date at job start Mon Mar 30 2020 01:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00117 * 2 1 4 4 H 1.48499 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46817 * 299.99638 * 3 2 1 6 6 H 1.48502 * 109.47301 * 59.99608 * 3 2 1 7 7 C 1.37878 * 119.99702 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99778 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00114 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47219 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47633 * 180.02562 * 10 9 7 12 12 S 1.65593 * 120.00375 * 163.94478 * 11 10 9 13 13 O 1.42100 * 106.40458 * 309.96627 * 12 11 10 14 14 O 1.42100 * 106.40416 * 177.04389 * 12 11 10 15 15 C 1.76205 * 107.21809 * 63.50564 * 12 11 10 16 16 C 1.38123 * 120.03500 * 244.28711 * 15 12 11 17 17 C 1.38272 * 120.07178 * 180.29364 * 16 15 12 18 18 C 1.38306 * 120.14719 * 359.44707 * 17 16 15 19 19 C 1.38080 * 120.07770 * 0.55106 * 18 17 16 20 20 C 1.38887 * 120.03746 * 64.30302 * 15 12 11 21 21 N 1.39674 * 120.07377 * 359.96178 * 20 15 12 22 22 H 0.96994 * 119.99903 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47281 * 60.00095 * 9 7 2 24 24 H 1.09002 * 109.47324 * 300.00197 * 9 7 2 25 25 H 1.09005 * 109.47256 * 60.00062 * 10 9 7 26 26 H 1.09002 * 109.46973 * 300.00216 * 10 9 7 27 27 H 0.97006 * 119.99871 * 343.94924 * 11 10 9 28 28 H 1.08003 * 119.96841 * 0.02562 * 16 15 12 29 29 H 1.08000 * 119.92145 * 179.69609 * 17 16 15 30 30 H 1.08001 * 119.96262 * 180.27138 * 18 17 16 31 31 H 1.07999 * 120.04002 * 179.69859 * 19 18 17 32 32 H 0.97001 * 120.00325 * 354.24553 * 21 20 15 33 33 H 0.96999 * 119.99822 * 174.24828 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2452 -3.6621 0.0027 11 7 1.5127 -4.9308 0.0033 12 16 2.2923 -6.3372 -0.3922 13 8 2.9749 -6.0879 -1.6134 14 8 1.3420 -7.3815 -0.2322 15 6 3.5358 -6.6049 0.8272 16 6 4.8698 -6.5892 0.4693 17 6 5.8460 -6.8053 1.4245 18 6 5.4910 -7.0263 2.7428 19 6 4.1593 -7.0433 3.1074 20 6 3.1757 -6.8323 2.1491 21 7 1.8276 -6.8483 2.5145 22 1 -0.4850 0.8400 -0.0004 23 1 0.6240 -2.5575 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 2.8718 -3.6036 0.8927 26 1 2.8718 -3.6051 -0.8873 27 1 0.5709 -4.9471 0.2352 28 1 5.1506 -6.4123 -0.5585 29 1 6.8881 -6.7973 1.1411 30 1 6.2561 -7.1904 3.4872 31 1 3.8826 -7.2208 4.1361 32 1 1.1460 -6.6185 1.8637 33 1 1.5732 -7.0892 3.4189 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274516728.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:31 Heat of formation + Delta-G solvation = -85.713815 kcal Electronic energy + Delta-G solvation = -18539.870541 eV Core-core repulsion = 15497.799324 eV Total energy + Delta-G solvation = -3042.071217 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.32365 -38.44743 -37.09743 -36.99149 -35.57084 -34.71729 -32.14878 -31.02353 -29.65934 -26.44131 -24.31961 -23.31696 -22.96730 -20.61567 -19.21985 -18.61585 -18.21096 -18.09842 -17.71179 -16.70560 -16.45226 -15.78643 -15.70576 -15.41871 -15.10006 -14.84660 -14.47630 -14.36609 -13.44479 -13.41250 -13.26140 -13.23220 -13.12886 -13.00027 -12.44022 -12.41866 -12.35446 -11.79469 -11.65862 -11.51175 -11.29503 -10.63135 -10.35680 -10.30947 -8.77848 -8.20999 -6.31329 -0.61198 -0.01056 0.57406 1.42633 1.44028 1.56635 1.98574 2.43252 2.55497 2.70989 2.81743 3.14168 3.36555 3.87431 4.11295 4.20543 4.41856 4.46294 4.53723 4.66854 4.82757 4.92949 4.94337 5.03714 5.32259 5.49710 5.53560 5.63429 5.80358 5.82959 5.99982 6.22397 6.25963 6.64473 6.84278 7.37972 8.91244 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.021687 B = 0.005241 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.790909 B = 5341.177216 C = 5775.336070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.021 3.979 10 C 0.139 3.861 11 N -1.113 6.113 12 S 2.707 3.293 13 O -0.995 6.995 14 O -0.987 6.987 15 C -0.764 4.764 16 C -0.002 4.002 17 C -0.200 4.200 18 C -0.017 4.017 19 C -0.219 4.219 20 C 0.299 3.701 21 N -0.863 5.863 22 H 0.264 0.736 23 H 0.001 0.999 24 H 0.010 0.990 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.420 0.580 28 H 0.138 0.862 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.396 0.604 33 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.296 -14.502 8.205 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.018 4.018 10 C 0.013 3.987 11 N -0.875 5.875 12 S 2.801 3.199 13 O -0.985 6.985 14 O -0.977 6.977 15 C -0.861 4.861 16 C -0.021 4.021 17 C -0.221 4.221 18 C -0.036 4.036 19 C -0.242 4.242 20 C 0.188 3.812 21 N -0.402 5.402 22 H 0.073 0.927 23 H 0.019 0.981 24 H 0.029 0.971 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.256 0.744 28 H 0.156 0.844 29 H 0.171 0.829 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.226 0.774 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 9.131 -14.927 7.426 19.009 hybrid contribution -0.533 1.142 0.496 1.354 sum 8.598 -13.785 7.921 18.075 Atomic orbital electron populations 1.70086 1.07711 1.27799 1.51433 1.25911 0.95740 1.03226 0.94619 0.85406 0.79220 0.78799 0.77673 1.18434 1.20663 1.20362 1.21589 0.93872 0.91786 1.50896 0.91568 1.19155 0.94416 0.91955 0.96235 1.21234 0.94789 0.81848 1.00827 1.55381 1.22174 1.21900 1.88000 1.01003 0.73189 0.71822 0.73855 1.93501 1.75987 1.85343 1.43660 1.93527 1.61888 1.54976 1.87328 1.29903 1.13684 1.31112 1.11351 1.20934 0.90401 0.89936 1.00878 1.21386 1.00276 1.06908 0.93496 1.21652 0.96014 0.89440 0.96488 1.21100 0.92567 1.10960 0.99612 1.17430 0.85819 0.86868 0.91105 1.42937 1.03454 1.76233 1.17572 0.92721 0.98076 0.97131 0.91634 0.91866 0.74444 0.84438 0.82940 0.81721 0.82614 0.77389 0.74726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.53 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.96 43.06 29.54 68.60 2.03 45.08 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.41 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.42 16 9 C 0.02 1.05 5.12 29.85 0.15 1.21 16 10 C 0.14 5.51 6.15 86.38 0.53 6.05 16 11 N -1.11 -37.27 5.45 -187.49 -1.02 -38.30 16 12 S 2.71 88.89 4.98 -56.49 -0.28 88.61 16 13 O -0.99 -38.67 16.48 -128.00 -2.11 -40.78 16 14 O -0.99 -34.12 16.47 -128.00 -2.11 -36.23 16 15 C -0.76 -21.91 5.87 22.40 0.13 -21.78 16 16 C 0.00 -0.04 9.54 22.25 0.21 0.17 16 17 C -0.20 -4.00 10.04 22.29 0.22 -3.78 16 18 C -0.02 -0.29 10.04 22.25 0.22 -0.06 16 19 C -0.22 -4.19 9.90 22.40 0.22 -3.97 16 20 C 0.30 7.38 6.72 38.21 0.26 7.63 16 21 N -0.86 -18.50 8.84 -51.37 -0.45 -18.95 16 22 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 23 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 24 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 26 H 0.06 2.58 7.77 -2.39 -0.02 2.56 16 27 H 0.42 12.74 8.66 -96.74 -0.84 11.91 16 28 H 0.14 3.55 7.33 -2.91 -0.02 3.53 16 29 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 30 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 31 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 32 H 0.40 9.28 5.96 -92.71 -0.55 8.72 16 33 H 0.42 6.15 8.85 -92.71 -0.82 5.33 16 Total: -1.00 -71.81 297.52 -2.07 -73.87 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: -1.05 Total: 24.52 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 2.65 Total: -43.31 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -1.19 Total: -111.78 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -4.22 Total: -77.00 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 88.89 SS G_CDS: -0.28 Total: 88.61 kcal Total: -71.81 -2.07 -73.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274516728.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.840 kcal (2) G-P(sol) polarization free energy of solvation -71.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds