Wall clock time and date at job start Mon Mar 30 2020 01:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48502 * 109.46896 * 269.99688 * 3 2 1 5 5 H 1.48500 * 109.47169 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.46966 * 149.99676 * 3 2 1 7 7 C 1.37886 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47225 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47290 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.53948 * 68.37607 * 11 10 9 13 13 O 1.42101 * 110.54343 * 291.62450 * 11 10 9 14 14 C 1.76194 * 104.44961 * 179.97438 * 11 10 9 15 15 C 1.38229 * 120.00244 * 89.99766 * 14 11 10 16 16 C 1.38234 * 120.00615 * 180.02562 * 15 14 11 17 17 C 1.38239 * 119.99681 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00049 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00114 * 18 17 16 20 20 C 1.38236 * 119.99618 * 0.24824 * 17 16 15 21 21 C 1.38231 * 120.00348 * 359.49741 * 20 17 16 22 22 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47110 * 59.99610 * 9 7 2 24 24 H 1.09000 * 109.47425 * 299.99910 * 9 7 2 25 25 H 1.08999 * 109.47181 * 59.99916 * 10 9 7 26 26 H 1.09005 * 109.47197 * 299.99678 * 10 9 7 27 27 H 1.08006 * 120.00063 * 0.02562 * 15 14 11 28 28 H 1.07993 * 120.00649 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.47247 * 330.00049 * 18 17 16 30 30 H 1.09001 * 109.47358 * 209.99475 * 18 17 16 31 31 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.99728 * 179.72715 * 20 17 16 33 33 H 1.08001 * 119.99970 * 180.22692 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2355 13 8 0.6646 -5.4194 1.2386 14 6 2.5960 -6.4670 0.0005 15 6 3.0903 -6.9509 1.1972 16 6 4.0775 -7.9185 1.1966 17 6 4.5708 -8.4019 -0.0009 18 6 5.6474 -9.4564 -0.0016 19 8 5.0449 -10.7523 -0.0016 20 6 4.0804 -7.9139 -1.1976 21 6 3.0896 -6.9501 -1.1970 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 2.8719 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 2.7053 -6.5730 2.1328 28 1 4.4640 -8.2963 2.1316 29 1 6.2669 -9.3438 0.8882 30 1 6.2661 -9.3435 -0.8918 31 1 5.6801 -11.4813 -0.0025 32 1 4.4689 -8.2884 -2.1332 33 1 2.7039 -6.5715 -2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274782955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:13 Heat of formation + Delta-G solvation = -103.996476 kcal Electronic energy + Delta-G solvation = -17882.792458 eV Core-core repulsion = 14807.635694 eV Total energy + Delta-G solvation = -3075.156764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.56053 -36.95666 -36.57931 -35.41497 -33.91218 -32.12127 -31.18158 -31.15195 -26.59956 -25.57283 -22.97632 -22.11403 -21.35988 -18.68232 -17.85586 -17.68986 -16.58458 -16.14754 -15.74971 -15.28660 -15.09498 -14.63994 -14.47678 -14.10800 -13.57589 -13.41664 -13.39407 -12.90029 -12.52535 -11.77873 -11.73926 -11.56535 -11.54257 -11.31778 -11.08920 -10.97414 -10.59323 -10.48979 -10.40105 -10.36360 -9.74169 -9.42107 -9.11655 -9.09764 -8.51074 -6.13272 -4.19079 0.47957 0.78338 1.21947 3.20959 3.26001 3.32340 3.34860 3.43524 4.06165 4.31370 4.40905 4.42866 4.61874 4.63102 4.80937 4.99487 5.00620 5.22023 5.22832 5.39012 5.59120 5.67261 5.69429 5.85886 6.00331 6.08089 6.26386 6.44305 6.72368 7.19083 7.29167 7.34691 7.79594 8.15473 8.84295 9.45683 10.97679 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.004062 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.860250 B = 6891.726719 C = 7252.882611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.901 3.099 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.062 0.938 9 C 0.025 3.975 10 C -0.563 4.563 11 S 2.474 3.526 12 O -0.946 6.946 13 O -0.946 6.946 14 C -0.648 4.648 15 C -0.027 4.027 16 C -0.123 4.123 17 C -0.052 4.052 18 C 0.113 3.887 19 O -0.565 6.565 20 C -0.123 4.123 21 C -0.027 4.027 22 H 0.265 0.735 23 H 0.036 0.964 24 H 0.036 0.964 25 H 0.124 0.876 26 H 0.124 0.876 27 H 0.144 0.856 28 H 0.130 0.870 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.381 0.619 32 H 0.130 0.870 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.625 -17.003 -0.003 21.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.013 4.013 10 C -0.697 4.697 11 S 2.656 3.344 12 O -0.943 6.943 13 O -0.943 6.943 14 C -0.732 4.732 15 C -0.046 4.046 16 C -0.142 4.142 17 C -0.053 4.053 18 C 0.035 3.965 19 O -0.371 6.371 20 C -0.142 4.142 21 C -0.046 4.046 22 H 0.075 0.925 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.142 0.858 26 H 0.142 0.858 27 H 0.162 0.838 28 H 0.148 0.852 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.229 0.771 32 H 0.148 0.852 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.048 -16.766 0.004 20.079 hybrid contribution 1.910 0.492 -0.012 1.973 sum 12.958 -16.274 -0.008 20.803 Atomic orbital electron populations 1.69952 1.06110 1.27247 1.49433 1.25066 0.94978 0.99533 0.94872 0.86459 0.79704 0.82817 0.78242 1.20456 1.21003 1.19748 1.20993 0.93109 0.89630 1.52335 0.91944 1.19039 0.92763 0.90312 0.99224 1.30194 1.13342 1.15587 1.10562 1.06339 0.76074 0.77283 0.74699 1.93520 1.70823 1.85494 1.44467 1.93520 1.70842 1.85504 1.44432 1.31098 1.21823 1.21135 0.99103 1.21008 0.92789 0.93639 0.97152 1.21150 0.97583 0.97724 0.97716 1.19878 0.96331 0.95208 0.93837 1.21057 0.92501 0.82022 1.00890 1.86586 1.37820 1.15002 1.97726 1.21151 0.97558 0.97756 0.97717 1.21008 0.92770 0.93657 0.97142 0.92486 0.94562 0.94543 0.85786 0.85779 0.83787 0.85164 0.92311 0.92312 0.77135 0.85163 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.52 -14.19 9.11 -34.44 -0.31 -14.50 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.64 4.98 -27.89 -0.14 0.50 16 10 C -0.56 -10.54 5.92 37.16 0.22 -10.32 16 11 S 2.47 44.84 5.16 -107.50 -0.55 44.28 16 12 O -0.95 -19.51 17.13 -57.54 -0.99 -20.50 16 13 O -0.95 -19.51 17.13 -57.54 -0.99 -20.50 16 14 C -0.65 -9.80 5.66 -39.58 -0.22 -10.02 16 15 C -0.03 -0.37 9.47 -39.59 -0.37 -0.75 16 16 C -0.12 -1.45 9.70 -39.58 -0.38 -1.84 16 17 C -0.05 -0.59 5.51 -104.62 -0.58 -1.17 16 18 C 0.11 0.90 7.17 36.01 0.26 1.15 16 19 O -0.57 -4.94 13.64 -35.23 -0.48 -5.42 16 20 C -0.12 -1.45 9.70 -39.58 -0.38 -1.84 16 21 C -0.03 -0.37 9.47 -39.58 -0.37 -0.75 16 22 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 23 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 24 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 26 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 27 H 0.14 1.81 7.57 -52.48 -0.40 1.41 16 28 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.06 0.36 8.09 -51.93 -0.42 -0.06 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.38 1.30 9.12 45.56 0.42 1.72 16 32 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 33 H 0.14 1.81 7.57 -52.49 -0.40 1.41 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -36.15 304.52 -8.39 -44.54 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.30 Total: 0.53 kcal Atomic # 6 Polarization: -35.61 SS G_CDS: -2.39 Total: -38.00 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.74 Total: -25.46 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -2.45 Total: -46.42 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 44.84 SS G_CDS: -0.55 Total: 44.28 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -36.15 -8.39 -44.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274782955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.461 kcal (2) G-P(sol) polarization free energy of solvation -36.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds