Wall clock time and date at job start Mon Mar 30 2020 01:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48502 * 109.46896 * 269.99688 * 3 2 1 5 5 H 1.48500 * 109.47169 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.46966 * 149.99676 * 3 2 1 7 7 C 1.37886 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47225 * 179.97438 * 9 7 2 11 11 S 1.81403 * 109.47290 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.53948 * 68.37607 * 11 10 9 13 13 O 1.42101 * 110.54343 * 291.62450 * 11 10 9 14 14 C 1.76194 * 104.44961 * 179.97438 * 11 10 9 15 15 C 1.38229 * 120.00244 * 89.99766 * 14 11 10 16 16 C 1.38234 * 120.00615 * 180.02562 * 15 14 11 17 17 C 1.38239 * 119.99681 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00049 * 179.97438 * 17 16 15 19 19 O 1.42905 * 109.46972 * 90.00114 * 18 17 16 20 20 C 1.38236 * 119.99618 * 0.24824 * 17 16 15 21 21 C 1.38231 * 120.00348 * 359.49741 * 20 17 16 22 22 H 0.97003 * 120.00226 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47110 * 59.99610 * 9 7 2 24 24 H 1.09000 * 109.47425 * 299.99910 * 9 7 2 25 25 H 1.08999 * 109.47181 * 59.99916 * 10 9 7 26 26 H 1.09005 * 109.47197 * 299.99678 * 10 9 7 27 27 H 1.08006 * 120.00063 * 0.02562 * 15 14 11 28 28 H 1.07993 * 120.00649 * 179.97438 * 16 15 14 29 29 H 1.09000 * 109.47247 * 330.00049 * 18 17 16 30 30 H 1.09001 * 109.47358 * 209.99475 * 18 17 16 31 31 H 0.96696 * 114.00036 * 179.97438 * 19 18 17 32 32 H 1.08004 * 119.99728 * 179.72715 * 20 17 16 33 33 H 1.08001 * 119.99970 * 180.22692 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 16 1.3382 -5.2331 0.0013 12 8 0.6638 -5.4201 -1.2355 13 8 0.6646 -5.4194 1.2386 14 6 2.5960 -6.4670 0.0005 15 6 3.0903 -6.9509 1.1972 16 6 4.0775 -7.9185 1.1966 17 6 4.5708 -8.4019 -0.0009 18 6 5.6474 -9.4564 -0.0016 19 8 5.0449 -10.7523 -0.0016 20 6 4.0804 -7.9139 -1.1976 21 6 3.0896 -6.9501 -1.1970 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5568 0.8903 25 1 2.8719 -3.6044 0.8905 26 1 2.8719 -3.6044 -0.8895 27 1 2.7053 -6.5730 2.1328 28 1 4.4640 -8.2963 2.1316 29 1 6.2669 -9.3438 0.8882 30 1 6.2661 -9.3435 -0.8918 31 1 5.6801 -11.4813 -0.0025 32 1 4.4689 -8.2884 -2.1332 33 1 2.7039 -6.5715 -2.1321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274782955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:12 Heat of formation + Delta-G solvation = -132.314663 kcal Electronic energy + Delta-G solvation = -17884.020427 eV Core-core repulsion = 14807.635694 eV Total energy + Delta-G solvation = -3076.384733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.46739 -38.14567 -37.58843 -36.98022 -35.89357 -33.15504 -32.99742 -32.10537 -27.70304 -27.22964 -23.92799 -23.66087 -22.64335 -20.03702 -19.17757 -18.39723 -18.37709 -17.28288 -16.96524 -16.70195 -16.45628 -16.31337 -15.52313 -15.16083 -14.82059 -14.51086 -14.44034 -14.21650 -13.88976 -13.71796 -13.16740 -13.07997 -12.92072 -12.78373 -12.56986 -12.28637 -12.24068 -12.12131 -11.90038 -11.60246 -11.04868 -10.99993 -10.63331 -10.31556 -10.07720 -8.24832 -6.38922 -0.90643 -0.30303 0.26449 1.42574 1.44410 1.55544 1.99917 2.31605 2.40116 2.92330 3.08770 3.16436 3.45323 3.69770 3.91133 4.02756 4.05468 4.06766 4.28864 4.30980 4.49918 4.57967 4.68405 4.75054 4.94692 5.06066 5.07439 5.28022 5.29067 5.38199 5.69445 5.79229 6.06337 6.74743 6.90067 7.31167 8.87493 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.033371 B = 0.004062 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.860250 B = 6891.726719 C = 7252.882611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.004 4.004 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.017 3.983 10 C -0.560 4.560 11 S 2.489 3.511 12 O -0.979 6.979 13 O -0.979 6.979 14 C -0.654 4.654 15 C -0.043 4.043 16 C -0.124 4.124 17 C -0.052 4.052 18 C 0.113 3.887 19 O -0.590 6.590 20 C -0.124 4.124 21 C -0.043 4.043 22 H 0.267 0.733 23 H 0.010 0.990 24 H 0.010 0.990 25 H 0.148 0.852 26 H 0.148 0.852 27 H 0.148 0.852 28 H 0.159 0.841 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.404 0.596 32 H 0.159 0.841 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.961 -18.235 -0.005 24.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.578 4.578 8 H 0.096 0.904 9 C -0.022 4.022 10 C -0.692 4.692 11 S 2.677 3.323 12 O -0.976 6.976 13 O -0.976 6.976 14 C -0.743 4.743 15 C -0.062 4.062 16 C -0.143 4.143 17 C -0.052 4.052 18 C 0.036 3.964 19 O -0.400 6.400 20 C -0.142 4.142 21 C -0.061 4.061 22 H 0.076 0.924 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.166 0.834 26 H 0.166 0.834 27 H 0.166 0.834 28 H 0.177 0.823 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.255 0.745 32 H 0.177 0.823 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 14.370 -17.976 0.001 23.014 hybrid contribution 0.947 0.696 -0.012 1.175 sum 15.318 -17.281 -0.011 23.092 Atomic orbital electron populations 1.70103 1.08087 1.28346 1.50822 1.26122 0.95854 1.03881 0.94370 0.85297 0.78643 0.77593 0.78626 1.19598 1.20922 1.18083 1.21515 0.94079 0.90613 1.51607 0.90408 1.18902 0.93686 0.92820 0.96775 1.30053 1.12328 1.13870 1.12970 1.05323 0.76367 0.77358 0.73279 1.93468 1.72561 1.86006 1.45596 1.93468 1.72580 1.86016 1.45561 1.30363 1.22052 1.21170 1.00704 1.21221 0.93645 0.94563 0.96722 1.21516 0.96602 0.96694 0.99441 1.20427 0.96230 0.95300 0.93290 1.21146 0.91280 0.80844 1.03156 1.86512 1.39616 1.15967 1.97869 1.21516 0.96570 0.96722 0.99442 1.21222 0.93631 0.94579 0.96709 0.92381 0.97179 0.97160 0.83416 0.83392 0.83424 0.82331 0.90093 0.90090 0.74513 0.82320 0.83419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.25 16 3 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 8 H 0.08 3.92 7.74 -2.91 -0.02 3.90 16 9 C 0.02 0.87 4.98 29.85 0.15 1.02 16 10 C -0.56 -21.18 5.92 71.98 0.43 -20.76 16 11 S 2.49 93.08 5.16 -56.49 -0.29 92.79 16 12 O -0.98 -42.07 17.13 -127.65 -2.19 -44.25 16 13 O -0.98 -42.07 17.13 -127.65 -2.19 -44.25 16 14 C -0.65 -19.42 5.66 22.27 0.13 -19.29 16 15 C -0.04 -1.12 9.47 22.27 0.21 -0.90 16 16 C -0.12 -2.57 9.70 22.27 0.22 -2.35 16 17 C -0.05 -1.00 5.51 -19.86 -0.11 -1.11 16 18 C 0.11 1.29 7.17 71.24 0.51 1.80 16 19 O -0.59 -8.06 13.64 -148.98 -2.03 -10.10 16 20 C -0.12 -2.56 9.70 22.27 0.22 -2.35 16 21 C -0.04 -1.11 9.47 22.27 0.21 -0.90 16 22 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 23 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.15 4.81 8.14 -2.39 -0.02 4.79 16 26 H 0.15 4.81 8.14 -2.39 -0.02 4.79 16 27 H 0.15 3.62 7.57 -2.91 -0.02 3.60 16 28 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 29 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 30 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 31 H 0.40 1.24 9.12 -74.06 -0.68 0.56 16 32 H 0.16 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.15 3.63 7.57 -2.91 -0.02 3.60 16 Total: -1.00 -79.92 304.52 -1.29 -81.21 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.45 Total: 10.10 kcal Atomic # 6 Polarization: -76.69 SS G_CDS: 2.65 Total: -74.04 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.28 Total: -56.49 kcal Atomic # 8 Polarization: -92.20 SS G_CDS: -6.41 Total: -98.60 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 93.08 SS G_CDS: -0.29 Total: 92.79 kcal Total: -79.92 -1.29 -81.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274782955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.104 kcal (2) G-P(sol) polarization free energy of solvation -79.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds