Wall clock time and date at job start Mon Mar 30 2020 01:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46996 * 2 1 4 4 C 1.50707 * 109.47141 * 239.99685 * 2 1 3 5 5 H 1.07995 * 119.99843 * 240.00374 * 4 2 1 6 6 C 1.37878 * 119.99538 * 60.00311 * 4 2 1 7 7 N 1.31513 * 120.00371 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99352 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47170 * 60.00060 * 8 6 4 10 10 H 1.48500 * 109.46710 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47057 * 299.99658 * 8 6 4 12 12 N 1.46502 * 109.46871 * 120.00093 * 2 1 3 13 13 C 1.39748 * 119.99675 * 274.99853 * 12 2 1 14 14 C 1.38918 * 120.06243 * 354.31425 * 13 12 2 15 15 C 1.38083 * 119.93505 * 179.97438 * 14 13 12 16 16 C 1.38405 * 120.06650 * 0.27019 * 15 14 13 17 17 Cl 1.73592 * 119.94147 * 179.72597 * 16 15 14 18 18 C 1.38366 * 120.11768 * 359.45142 * 16 15 14 19 19 C 1.38122 * 120.06149 * 0.54966 * 18 16 15 20 20 N 1.48012 * 120.03025 * 179.70027 * 19 18 16 21 21 O 1.21801 * 119.99551 * 142.55195 * 20 19 18 22 22 O 1.21794 * 119.99974 * 322.55482 * 20 19 18 23 23 H 1.09005 * 109.47204 * 60.00272 * 1 2 3 24 24 H 1.09002 * 109.47408 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47236 * 300.00227 * 1 2 3 26 26 H 0.96994 * 120.00209 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00545 * 94.99560 * 12 2 1 28 28 H 1.07992 * 120.02999 * 359.95612 * 14 13 12 29 29 H 1.08004 * 119.96868 * 179.97438 * 15 14 13 30 30 H 1.08000 * 119.96745 * 180.29074 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8281 -2.5199 -4.0080 10 1 1.8280 -0.4193 -5.2203 11 1 3.8075 -1.1191 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 2.1517 0.0066 2.4000 14 6 1.9356 1.3783 2.4373 15 6 2.0676 2.0645 3.6283 16 6 2.4204 1.3879 4.7830 17 17 2.5925 2.2549 6.2770 18 6 2.6307 0.0207 4.7498 19 6 2.5000 -0.6708 3.5613 20 7 2.7316 -2.1322 3.5252 21 8 2.0392 -2.8412 2.8171 22 8 3.6144 -2.6258 4.2037 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7088 1.1612 -3.4844 27 1 2.2489 -1.6318 1.1527 28 1 1.6648 1.9075 1.5357 29 1 1.9001 3.1311 3.6578 30 1 2.9013 -0.5056 5.6532 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276263174.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:16 Heat of formation + Delta-G solvation = -1.466104 kcal Electronic energy + Delta-G solvation = -18235.664556 eV Core-core repulsion = 15059.369793 eV Total energy + Delta-G solvation = -3176.294763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.29807 -40.73290 -38.20361 -37.57607 -37.07104 -34.78791 -33.09175 -31.74347 -29.46885 -27.54566 -27.19336 -24.45063 -23.45161 -22.02585 -20.46022 -19.85279 -19.21875 -18.44997 -17.95907 -17.17252 -16.65676 -16.29886 -15.71911 -15.37436 -15.02463 -14.36979 -14.05321 -13.80309 -13.38219 -13.24931 -12.91309 -12.80048 -12.74183 -12.59770 -12.37053 -12.34375 -12.25947 -12.13316 -11.88197 -11.22318 -11.01732 -10.64314 -10.57420 -8.70060 -8.26948 -6.41897 -1.02042 0.04075 0.15065 0.35279 1.11061 1.41188 1.42599 1.49704 2.22147 2.24024 2.45337 3.04327 3.29043 3.75032 3.80107 3.88657 4.31412 4.45750 4.61261 4.81928 4.88061 4.91237 4.95975 5.12814 5.23473 5.39323 5.53262 5.73172 5.93366 6.14167 6.45176 6.53663 6.72130 7.28910 8.77878 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.023537 B = 0.005308 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.306481 B = 5274.008264 C = 6133.885768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.267 3.733 3 H 0.040 0.960 4 C -0.559 4.559 5 H 0.053 0.947 6 C 0.032 3.968 7 N -0.903 5.903 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.274 1.274 12 N -0.700 5.700 13 C 0.278 3.722 14 C -0.191 4.191 15 C 0.004 3.996 16 C -0.101 4.101 17 Cl -0.043 7.043 18 C -0.002 4.002 19 C -0.145 4.145 20 N 0.046 4.954 21 O -0.217 6.217 22 O -0.157 6.157 23 H 0.077 0.923 24 H 0.025 0.975 25 H 0.034 0.966 26 H 0.270 0.730 27 H 0.399 0.601 28 H 0.155 0.845 29 H 0.181 0.819 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 4.894 12.918 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.165 3.835 3 H 0.057 0.943 4 C -0.597 4.597 5 H 0.071 0.929 6 C -0.170 4.170 7 N -0.541 5.541 8 Si 0.785 3.215 9 H -0.199 1.199 10 H -0.202 1.202 11 H -0.200 1.200 12 N -0.321 5.321 13 C 0.161 3.839 14 C -0.214 4.214 15 C -0.016 4.016 16 C -0.131 4.131 17 Cl -0.014 7.014 18 C -0.022 4.022 19 C -0.236 4.236 20 N 0.558 4.442 21 O -0.418 6.418 22 O -0.378 6.378 23 H 0.096 0.904 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.237 0.763 28 H 0.172 0.828 29 H 0.198 0.802 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.217 5.794 12.592 13.915 hybrid contribution 0.394 -1.417 -0.914 1.732 sum 1.611 4.376 11.679 12.575 Atomic orbital electron populations 1.22025 0.97376 0.99628 1.00949 1.18782 0.91544 0.92902 0.80280 0.94287 1.21367 1.33202 1.13672 0.91427 0.92909 1.25492 0.94633 0.95509 1.01379 1.69912 1.36018 1.23096 1.25031 0.85576 0.78647 0.78717 0.78534 1.19949 1.20229 1.19970 1.46213 1.64800 1.13454 1.07617 1.18080 0.88299 0.92946 0.84620 1.20954 1.09547 0.90091 1.00777 1.21449 0.89470 1.02121 0.88542 1.20207 1.12351 0.90926 0.89651 1.98370 1.96558 1.75423 1.31084 1.20505 0.92878 0.93132 0.95706 1.20294 1.27327 0.78716 0.97277 1.43599 0.98322 1.03937 0.98325 1.94520 1.46634 1.60673 1.39932 1.94452 1.24738 1.77956 1.40658 0.90406 0.95540 0.94652 0.92082 0.76338 0.82757 0.80198 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.25 9.28 71.98 0.67 -5.58 16 2 C 0.27 12.18 2.37 44.25 0.10 12.29 16 3 H 0.04 1.84 6.26 -2.39 -0.01 1.83 16 4 C -0.56 -28.62 8.73 25.60 0.22 -28.40 16 5 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 6 C 0.03 1.61 5.30 84.66 0.45 2.06 16 7 N -0.90 -46.71 11.32 21.45 0.24 -46.46 16 8 Si 0.96 40.93 29.54 68.60 2.03 42.96 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 12 N -0.70 -28.74 5.02 -322.45 -1.62 -30.36 16 13 C 0.28 9.68 6.59 38.20 0.25 9.93 16 14 C -0.19 -5.52 9.24 22.40 0.21 -5.31 16 15 C 0.00 0.09 9.82 22.27 0.22 0.30 16 16 C -0.10 -2.25 6.32 22.34 0.14 -2.11 16 17 Cl -0.04 -0.79 28.95 -2.72 -0.08 -0.87 16 18 C 0.00 -0.06 9.44 22.27 0.21 0.15 16 19 C -0.15 -4.76 6.51 36.50 0.24 -4.52 16 20 N 0.05 1.70 4.29 -46.17 -0.20 1.50 16 21 O -0.22 -8.74 16.74 18.88 0.32 -8.42 16 22 O -0.16 -5.59 18.95 18.89 0.36 -5.23 16 23 H 0.08 3.75 6.07 -2.38 -0.01 3.74 16 24 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 27 H 0.40 17.20 6.13 -92.71 -0.57 16.63 16 28 H 0.15 4.63 6.14 -2.91 -0.02 4.62 16 29 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 30 H 0.16 3.62 8.01 -2.91 -0.02 3.60 16 Total: -1.00 -54.23 282.73 4.38 -49.84 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.63 Total: 18.22 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 2.71 Total: -21.17 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -1.57 Total: -75.32 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.67 Total: -13.65 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 2.03 Total: 42.96 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -54.23 4.38 -49.84 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276263174.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.375 kcal (2) G-P(sol) polarization free energy of solvation -54.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds