Wall clock time and date at job start Mon Mar 30 2020 01:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47173 * 2 1 4 4 C 1.50695 * 109.47192 * 120.00268 * 2 1 3 5 5 H 1.08005 * 120.00145 * 119.99225 * 4 2 1 6 6 C 1.37875 * 120.00068 * 300.00135 * 4 2 1 7 7 N 1.31517 * 120.00195 * 179.97438 * 6 4 2 8 8 Si 1.86804 * 119.99998 * 359.97438 * 6 4 2 9 9 H 1.48504 * 109.46959 * 90.00478 * 8 6 4 10 10 H 1.48496 * 109.47144 * 210.00295 * 8 6 4 11 11 H 1.48493 * 109.47046 * 330.00591 * 8 6 4 12 12 N 1.46502 * 109.47068 * 240.00221 * 2 1 3 13 13 C 1.39743 * 119.99947 * 84.99760 * 12 2 1 14 14 C 1.38920 * 120.06266 * 354.19093 * 13 12 2 15 15 C 1.38088 * 119.93666 * 180.02562 * 14 13 12 16 16 C 1.38394 * 120.06437 * 0.27473 * 15 14 13 17 17 Cl 1.73598 * 119.94097 * 179.70398 * 16 15 14 18 18 C 1.38365 * 120.12398 * 359.44560 * 16 15 14 19 19 C 1.38132 * 120.05537 * 0.55304 * 18 16 15 20 20 N 1.48010 * 120.02791 * 179.70094 * 19 18 16 21 21 O 1.21799 * 119.99808 * 6.11544 * 20 19 18 22 22 O 1.21799 * 119.99956 * 186.11557 * 20 19 18 23 23 H 1.08999 * 109.47457 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46808 * 299.99813 * 1 2 3 25 25 H 1.09007 * 109.47047 * 59.99542 * 1 2 3 26 26 H 0.97000 * 120.00200 * 179.97438 * 7 6 4 27 27 H 0.96998 * 120.00170 * 265.00460 * 12 2 1 28 28 H 1.08005 * 120.03022 * 0.03952 * 14 13 12 29 29 H 1.08005 * 119.96286 * 179.97438 * 15 14 13 30 30 H 1.07996 * 119.97048 * 180.27751 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 2.1372 -0.8598 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8021 0.8743 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0183 -0.6906 -1.1962 13 6 2.1517 0.0066 -2.3999 14 6 1.7094 1.3200 -2.4962 15 6 1.8420 2.0063 -3.6871 16 6 2.4098 1.3851 -4.7858 17 17 2.5679 2.2484 -6.2835 18 6 2.8565 0.0789 -4.6912 19 6 2.7263 -0.6123 -3.5024 20 7 3.1983 -2.0117 -3.4038 21 8 3.8013 -2.5179 -4.3331 22 8 2.9838 -2.6570 -2.3933 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.9032 -0.5282 4.4375 27 1 2.2489 -1.6317 -1.1527 28 1 1.2624 1.8039 -1.6403 29 1 1.4979 3.0273 -3.7625 30 1 3.3032 -0.4019 -5.5488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276263179.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:18 Heat of formation + Delta-G solvation = 8.436164 kcal Electronic energy + Delta-G solvation = -18336.088063 eV Core-core repulsion = 15160.222694 eV Total energy + Delta-G solvation = -3175.865369 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.31541 -40.77203 -38.36571 -37.59182 -37.10090 -34.73903 -33.18876 -32.27955 -29.78548 -27.50395 -27.11252 -24.46682 -23.59602 -22.04552 -20.37940 -19.80494 -19.25107 -18.63471 -17.98012 -17.62670 -16.62700 -16.35635 -15.75884 -15.33097 -15.12943 -14.80889 -14.12663 -14.07810 -13.79043 -13.48993 -13.03228 -12.81752 -12.71096 -12.65148 -12.38041 -12.32468 -12.10533 -11.86604 -11.50450 -11.35057 -11.14768 -10.77307 -10.67262 -8.75647 -8.38634 -6.49779 -1.15389 0.04166 0.28870 0.36987 1.11196 1.31568 1.36057 1.47653 2.22327 2.25448 2.28106 2.96067 3.25530 3.73259 3.77391 3.83101 4.25172 4.29369 4.50349 4.53096 4.60840 4.78051 4.84251 4.90242 5.08389 5.33000 5.35544 5.40119 5.79352 6.29790 6.38651 6.53958 6.70677 7.16475 8.77834 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.021866 B = 0.005932 C = 0.004834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.222704 B = 4719.119899 C = 5790.465648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.235 3.765 3 H 0.058 0.942 4 C -0.548 4.548 5 H 0.033 0.967 6 C 0.019 3.981 7 N -0.940 5.940 8 Si 0.953 3.047 9 H -0.261 1.261 10 H -0.297 1.297 11 H -0.228 1.228 12 N -0.688 5.688 13 C 0.281 3.719 14 C -0.196 4.196 15 C 0.013 3.987 16 C -0.103 4.103 17 Cl -0.043 7.043 18 C 0.002 3.998 19 C -0.149 4.149 20 N 0.058 4.942 21 O -0.160 6.160 22 O -0.251 6.251 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.271 0.729 27 H 0.411 0.589 28 H 0.165 0.835 29 H 0.187 0.813 30 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 10.822 -17.395 20.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.131 3.869 3 H 0.076 0.924 4 C -0.586 4.586 5 H 0.051 0.949 6 C -0.180 4.180 7 N -0.579 5.579 8 Si 0.778 3.222 9 H -0.187 1.187 10 H -0.225 1.225 11 H -0.150 1.150 12 N -0.318 5.318 13 C 0.162 3.838 14 C -0.219 4.219 15 C -0.007 4.007 16 C -0.133 4.133 17 Cl -0.014 7.014 18 C -0.018 4.018 19 C -0.242 4.242 20 N 0.559 4.441 21 O -0.380 6.380 22 O -0.438 6.438 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.080 0.920 27 H 0.258 0.742 28 H 0.183 0.817 29 H 0.204 0.796 30 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.842 11.415 -16.986 20.823 hybrid contribution 0.194 -0.966 0.756 1.242 sum -3.648 10.449 -16.230 19.644 Atomic orbital electron populations 1.22516 0.96723 1.01987 1.01169 1.19218 0.91915 0.93960 0.81847 0.92400 1.21214 1.32973 1.13698 0.90721 0.94900 1.25856 0.96956 1.00498 0.94671 1.70036 1.46576 1.42329 0.98929 0.85808 0.78843 0.79074 0.78499 1.18682 1.22497 1.15041 1.46713 1.63510 1.14919 1.06689 1.18235 0.88220 0.92828 0.84523 1.21053 1.08228 0.91456 1.01142 1.21548 0.89566 1.01080 0.88501 1.20271 1.09855 0.92680 0.90529 1.98379 1.96894 1.75458 1.30654 1.20617 0.93334 0.92730 0.95113 1.20407 1.21409 0.83110 0.99245 1.43641 0.97821 1.03369 0.99264 1.94426 1.39249 1.73459 1.30842 1.94276 1.65012 1.62991 1.21482 0.93167 0.92915 0.90669 0.91981 0.74185 0.81732 0.79624 0.81469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 8.80 71.98 0.63 -5.35 16 2 C 0.23 9.74 1.82 44.24 0.08 9.82 16 3 H 0.06 2.25 5.81 -2.39 -0.01 2.24 16 4 C -0.55 -29.55 9.31 25.60 0.24 -29.31 16 5 H 0.03 2.05 7.98 -2.91 -0.02 2.03 16 6 C 0.02 1.06 5.45 84.65 0.46 1.52 16 7 N -0.94 -56.25 13.96 21.45 0.30 -55.95 16 8 Si 0.95 39.50 24.37 68.60 1.67 41.17 16 9 H -0.26 -10.24 6.87 99.48 0.68 -9.56 16 10 H -0.30 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.23 -7.95 6.53 99.48 0.65 -7.30 16 12 N -0.69 -27.09 5.12 -322.48 -1.65 -28.74 16 13 C 0.28 8.97 6.62 38.20 0.25 9.22 16 14 C -0.20 -4.68 8.70 22.40 0.19 -4.49 16 15 C 0.01 0.23 9.82 22.27 0.22 0.45 16 16 C -0.10 -1.99 6.32 22.34 0.14 -1.85 16 17 Cl -0.04 -0.69 28.95 -2.72 -0.08 -0.77 16 18 C 0.00 0.05 9.33 22.27 0.21 0.26 16 19 C -0.15 -4.63 6.86 36.50 0.25 -4.38 16 20 N 0.06 2.12 4.45 -46.17 -0.21 1.92 16 21 O -0.16 -5.64 18.46 18.89 0.35 -5.29 16 22 O -0.25 -10.56 15.71 18.89 0.30 -10.27 16 23 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.05 1.91 3.27 -2.39 -0.01 1.90 16 25 H 0.07 2.12 7.20 -2.38 -0.02 2.11 16 26 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.41 17.95 4.98 -98.65 -0.49 17.46 16 28 H 0.17 3.64 5.85 -2.91 -0.02 3.62 16 29 H 0.19 1.81 8.06 -2.91 -0.02 1.78 16 30 H 0.17 3.48 7.62 -2.91 -0.02 3.46 16 Total: -1.00 -63.98 271.80 3.99 -59.99 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.63 Total: 22.07 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 2.68 Total: -24.12 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.56 Total: -82.78 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: 0.65 Total: -15.56 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.67 Total: 41.17 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -63.98 3.99 -59.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276263179.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.422 kcal (2) G-P(sol) polarization free energy of solvation -63.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds