Wall clock time and date at job start Mon Mar 30 2020 01:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86791 * 120.00281 * 2 1 4 4 H 1.48504 * 109.46881 * 269.99824 * 3 2 1 5 5 H 1.48501 * 109.47476 * 29.99730 * 3 2 1 6 6 H 1.48503 * 109.47264 * 149.99838 * 3 2 1 7 7 C 1.38803 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99985 * 180.02562 * 7 2 1 9 9 S 1.76208 * 119.99843 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99711 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.46935 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00128 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99902 * 179.97438 * 11 10 9 14 14 C 1.46982 * 127.03017 * 359.97357 * 13 11 10 15 15 C 1.50774 * 106.55993 * 179.97438 * 14 13 11 16 16 O 1.21287 * 125.41995 * 180.02562 * 15 14 13 17 17 N 1.34298 * 109.15465 * 0.02562 * 15 14 13 18 18 C 1.46497 * 124.85474 * 179.97438 * 17 15 14 19 19 C 1.53000 * 117.50070 * 60.02781 * 18 17 15 20 20 C 1.52997 * 117.50064 * 351.40035 * 18 17 15 21 21 C 1.46229 * 110.29080 * 0.26457 * 17 15 14 22 22 H 0.97006 * 119.99673 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.46990 * 59.99732 * 10 9 7 24 24 H 1.09002 * 109.46813 * 299.99670 * 10 9 7 25 25 H 1.09003 * 110.03644 * 60.72460 * 14 13 11 26 26 H 1.08991 * 110.04063 * 299.27399 * 14 13 11 27 27 H 1.09002 * 115.55899 * 205.71203 * 18 17 15 28 28 H 1.08990 * 117.49990 * 145.01695 * 19 18 17 29 29 H 1.09004 * 117.49237 * 359.97438 * 19 18 17 30 30 H 1.08999 * 117.49685 * 0.02562 * 20 18 17 31 31 H 1.08999 * 117.52022 * 214.96844 * 20 18 17 32 32 H 1.09000 * 109.75227 * 119.38761 * 21 17 15 33 33 H 1.08994 * 109.75327 * 240.08048 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4979 2.0462 -1.4001 5 1 1.4479 2.6527 0.7000 6 1 3.5479 1.4400 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5156 -3.8916 0.0005 11 6 1.9871 -5.3027 -0.0001 12 8 0.7908 -5.5023 0.0000 13 7 2.8438 -6.3432 -0.0007 14 6 4.3123 -6.2807 -0.0014 15 6 4.8032 -7.7063 -0.0013 16 8 5.9666 -8.0492 -0.0013 17 7 3.7471 -8.5359 -0.0012 18 6 3.8314 -9.9985 -0.0016 19 6 4.5493 -10.6651 1.1736 20 6 5.2116 -10.6265 -0.2051 21 6 2.5011 -7.7707 -0.0075 22 1 -0.4850 0.8401 -0.0004 23 1 3.1243 -3.7315 0.8905 24 1 3.1242 -3.7315 -0.8895 25 1 4.6646 -5.7646 0.8918 26 1 4.6638 -5.7644 -0.8947 27 1 2.9738 -10.5188 -0.4281 28 1 4.1641 -11.6239 1.5203 29 1 4.9592 -10.0153 1.9469 30 1 6.0570 -9.9515 -0.3383 31 1 5.2624 -11.5602 -0.7653 32 1 1.9262 -8.0102 -0.9021 33 1 1.9169 -8.0106 0.8808 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279309812.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:45 Heat of formation + Delta-G solvation = -34.820506 kcal Electronic energy + Delta-G solvation = -17887.719164 eV Core-core repulsion = 14847.854847 eV Total energy + Delta-G solvation = -3039.864318 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.23751 -40.31565 -37.90361 -37.61971 -34.57402 -33.98836 -30.90470 -29.78062 -27.69886 -26.18786 -24.18528 -23.31432 -21.32923 -20.78722 -19.65594 -18.43283 -18.02157 -17.60073 -16.87318 -16.75139 -16.54243 -16.23387 -15.85064 -15.47498 -14.87740 -14.78636 -14.54729 -14.27998 -14.10625 -13.75351 -13.54190 -13.15039 -12.88456 -12.61843 -12.53374 -12.21954 -11.74569 -11.47150 -11.30973 -11.13094 -10.87783 -10.30992 -10.28861 -9.58973 -8.66418 -8.34029 -6.11863 0.98663 1.16345 1.37983 1.39626 1.44161 1.53018 1.62382 1.87940 2.27408 2.79789 3.00856 3.02940 3.14794 3.54826 3.71072 3.91911 3.98529 4.14044 4.17963 4.21095 4.26264 4.36465 4.47469 4.54003 4.68746 4.77323 4.98073 5.21219 5.43555 5.44397 5.73588 6.09315 6.21287 6.74326 6.92083 7.08141 8.74976 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.045400 B = 0.003625 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.595614 B = 7723.327140 C = 8241.182390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.546 4.546 8 H 0.085 0.915 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.572 3.428 12 O -0.544 6.544 13 N -0.626 5.626 14 C 0.068 3.932 15 C 0.519 3.481 16 O -0.538 6.538 17 N -0.594 5.594 18 C 0.076 3.924 19 C -0.182 4.182 20 C -0.190 4.190 21 C 0.339 3.661 22 H 0.271 0.729 23 H 0.114 0.886 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.165 0.835 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.123 0.877 32 H 0.094 0.906 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.191 -19.229 0.051 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.694 4.694 8 H 0.103 0.897 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.361 3.639 12 O -0.420 6.420 13 N -0.364 5.364 14 C -0.057 4.057 15 C 0.307 3.693 16 O -0.416 6.416 17 N -0.327 5.327 18 C -0.026 4.026 19 C -0.221 4.221 20 C -0.227 4.227 21 C 0.131 3.869 22 H 0.080 0.920 23 H 0.132 0.868 24 H 0.133 0.867 25 H 0.144 0.856 26 H 0.146 0.854 27 H 0.182 0.818 28 H 0.147 0.853 29 H 0.095 0.905 30 H 0.119 0.881 31 H 0.141 0.859 32 H 0.112 0.888 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.785 -19.618 0.057 21.495 hybrid contribution 1.516 1.306 0.056 2.002 sum 10.301 -18.313 0.113 21.011 Atomic orbital electron populations 1.70171 1.07906 1.28620 1.47973 1.26083 0.95931 1.03212 0.93755 0.84979 0.78245 0.76183 0.78750 1.19393 1.20466 1.18196 1.23206 0.95442 0.91889 1.58865 0.89720 1.85567 1.09833 0.99033 1.97073 1.23342 1.03952 0.92963 1.07265 1.19560 0.84796 0.84934 0.74657 1.90747 1.16238 1.85187 1.49793 1.48006 1.07167 1.05720 1.75523 1.22134 0.80018 0.95985 1.07612 1.20681 0.85141 0.88317 0.75149 1.90688 1.18387 1.80858 1.51663 1.47851 1.06623 1.06294 1.71938 1.21927 0.99525 0.76132 1.05046 1.23423 1.03681 1.03170 0.91784 1.23692 0.95738 1.03326 0.99980 1.21326 0.84748 0.76650 1.04145 0.91986 0.86791 0.86724 0.85572 0.85437 0.81787 0.85340 0.90474 0.88078 0.85850 0.88814 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.56 13.22 21.65 0.29 -54.27 16 2 C 0.02 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 42.56 29.55 68.60 2.03 44.59 16 4 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.55 -30.07 9.50 67.96 0.65 -29.42 16 8 H 0.08 4.31 7.80 -2.91 -0.02 4.28 16 9 S -0.14 -7.52 20.57 -56.49 -1.16 -8.68 16 10 C -0.12 -4.56 5.44 71.23 0.39 -4.18 16 11 C 0.57 19.44 7.90 87.65 0.69 20.13 16 12 O -0.54 -23.03 16.26 -3.06 -0.05 -23.08 16 13 N -0.63 -15.34 3.36 -836.20 -2.81 -18.15 16 14 C 0.07 1.34 6.67 85.56 0.57 1.91 16 15 C 0.52 11.47 7.99 87.76 0.70 12.17 16 16 O -0.54 -14.66 14.83 -3.05 -0.05 -14.70 16 17 N -0.59 -11.09 3.27 -810.30 -2.65 -13.74 16 18 C 0.08 1.07 6.90 44.99 0.31 1.38 16 19 C -0.18 -2.52 10.36 30.60 0.32 -2.20 16 20 C -0.19 -2.91 9.79 30.60 0.30 -2.61 16 21 C 0.34 6.71 7.57 170.94 1.29 8.00 16 22 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 23 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 24 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 25 H 0.13 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.16 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.10 2.22 5.37 -2.39 -0.01 2.21 16 31 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -73.84 302.91 2.40 -71.43 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.12 Total: 10.09 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: 5.69 Total: 6.50 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -5.17 Total: -86.16 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.09 Total: -37.78 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Atomic # 16 Polarization: -7.52 SS G_CDS: -1.16 Total: -8.68 kcal Total: -73.84 2.40 -71.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279309812.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.614 kcal (2) G-P(sol) polarization free energy of solvation -73.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds