Wall clock time and date at job start Mon Mar 30 2020 01:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42096 * 110.54412 * 2 1 4 4 O 1.42101 * 110.54246 * 223.25837 * 2 1 3 5 5 C 1.76201 * 104.45319 * 111.62822 * 2 1 3 6 6 C 1.38163 * 120.02752 * 115.01771 * 5 2 1 7 7 C 1.38243 * 120.05442 * 179.97438 * 6 5 2 8 8 C 1.38289 * 120.11362 * 0.02562 * 7 6 5 9 9 C 1.38125 * 120.05159 * 359.97438 * 8 7 6 10 10 C 1.38708 * 120.02749 * 295.00008 * 5 2 1 11 11 O 1.35898 * 120.05505 * 0.04436 * 10 5 2 12 12 C 1.42904 * 116.99940 * 179.97438 * 11 10 5 13 13 C 1.53002 * 109.47009 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47115 * 179.97438 * 13 12 11 15 15 H 1.08009 * 119.99767 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00172 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99880 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99884 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47308 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46729 * 120.00447 * 18 16 14 21 21 H 1.48501 * 109.47326 * 240.00212 * 18 16 14 22 22 H 1.09007 * 109.46982 * 308.36823 * 1 2 3 23 23 H 1.08997 * 109.47352 * 68.36793 * 1 2 3 24 24 H 1.09001 * 109.47083 * 188.37418 * 1 2 3 25 25 H 1.08001 * 119.97035 * 359.97438 * 6 5 2 26 26 H 1.08004 * 119.94085 * 180.02562 * 7 6 5 27 27 H 1.07993 * 119.96940 * 180.27537 * 8 7 6 28 28 H 1.08000 * 120.02369 * 180.02562 * 9 8 7 29 29 H 1.08999 * 109.47040 * 299.99833 * 12 11 10 30 30 H 1.08995 * 109.47340 * 59.99861 * 12 11 10 31 31 H 1.08999 * 109.47276 * 299.99925 * 13 12 11 32 32 H 1.08998 * 109.47492 * 59.99955 * 13 12 11 33 33 H 0.96997 * 119.99513 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9691 -0.9119 5 6 2.2537 -0.6289 1.5861 6 6 2.9162 -1.8368 1.6916 7 6 3.2619 -2.3305 2.9357 8 6 2.9455 -1.6174 4.0775 9 6 2.2833 -0.4094 3.9774 10 6 1.9355 0.0884 2.7299 11 8 1.2835 1.2765 2.6288 12 6 0.9877 1.9601 3.8483 13 6 0.2581 3.2681 3.5358 14 6 -0.0544 3.9887 4.8220 15 1 0.2378 3.5566 5.7678 16 6 -0.7132 5.1994 4.7914 17 7 -1.0695 5.7252 3.6398 18 14 -1.1012 6.0922 6.3857 19 1 -0.5988 5.2958 7.5339 20 1 -0.4421 7.4230 6.3807 21 1 -2.5705 6.2679 6.5098 22 1 -0.3633 0.6379 0.8058 23 1 -0.3634 0.3788 -0.9552 24 1 -0.3633 -1.0167 0.1497 25 1 3.1640 -2.3957 0.8013 26 1 3.7801 -3.2747 3.0160 27 1 3.2207 -2.0031 5.0480 28 1 2.0368 0.1473 4.8694 29 1 0.3542 1.3306 4.4732 30 1 1.9157 2.1793 4.3763 31 1 0.8920 3.8974 2.9111 32 1 -0.6699 3.0493 3.0077 33 1 -1.5333 6.5768 3.6183 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000285196016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:08 Heat of formation + Delta-G solvation = -111.986381 kcal Electronic energy + Delta-G solvation = -18479.074175 eV Core-core repulsion = 15403.570943 eV Total energy + Delta-G solvation = -3075.503232 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.24766 -38.66931 -37.96347 -36.95253 -35.48332 -32.81349 -32.09126 -30.73314 -30.23301 -27.09588 -24.54077 -23.77715 -22.37314 -20.22273 -19.47104 -18.50521 -17.80003 -17.42598 -17.23867 -16.90444 -16.56304 -16.19768 -15.83637 -15.31888 -14.59883 -14.50760 -14.33263 -14.02771 -13.94482 -13.37490 -13.22670 -13.10378 -13.06590 -12.97015 -12.71943 -12.50619 -12.48449 -12.00193 -11.70779 -11.67833 -11.47869 -11.33636 -10.62397 -10.39029 -9.39869 -8.25975 -6.39487 -0.81219 -0.13408 0.34857 1.41764 1.42687 1.55600 1.93084 2.09679 2.43624 2.47952 2.91883 3.09190 3.29268 3.79557 3.85741 4.05254 4.16078 4.18755 4.24876 4.31632 4.40876 4.53633 4.70449 4.78354 4.92100 5.07564 5.22549 5.32799 5.38433 5.47829 5.64644 5.79509 6.06124 6.26191 6.75863 7.30814 8.87277 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.024921 B = 0.005037 C = 0.004331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.263053 B = 5558.045574 C = 6463.506808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.508 3.492 3 O -0.981 6.981 4 O -0.967 6.967 5 C -0.709 4.709 6 C 0.000 4.000 7 C -0.177 4.177 8 C -0.022 4.022 9 C -0.242 4.242 10 C 0.196 3.804 11 O -0.333 6.333 12 C 0.079 3.921 13 C 0.024 3.976 14 C -0.544 4.544 15 H 0.073 0.927 16 C 0.002 3.998 17 N -0.931 5.931 18 Si 0.974 3.026 19 H -0.256 1.256 20 H -0.280 1.280 21 H -0.277 1.277 22 H 0.128 0.872 23 H 0.152 0.848 24 H 0.160 0.840 25 H 0.163 0.837 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.143 0.857 29 H 0.078 0.922 30 H 0.064 0.936 31 H -0.004 1.004 32 H 0.007 0.993 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.520 -18.259 -0.969 18.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.692 3.308 3 O -0.978 6.978 4 O -0.964 6.964 5 C -0.797 4.797 6 C -0.019 4.019 7 C -0.196 4.196 8 C -0.040 4.040 9 C -0.261 4.261 10 C 0.148 3.852 11 O -0.246 6.246 12 C 0.006 3.994 13 C -0.013 4.013 14 C -0.582 4.582 15 H 0.091 0.909 16 C -0.196 4.196 17 N -0.570 5.570 18 Si 0.798 3.202 19 H -0.180 1.180 20 H -0.206 1.206 21 H -0.202 1.202 22 H 0.147 0.853 23 H 0.171 0.829 24 H 0.179 0.821 25 H 0.181 0.819 26 H 0.186 0.814 27 H 0.184 0.816 28 H 0.161 0.839 29 H 0.096 0.904 30 H 0.082 0.918 31 H 0.014 0.986 32 H 0.025 0.975 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.953 -17.732 -1.853 18.504 hybrid contribution -0.722 0.822 1.308 1.705 sum 4.231 -16.910 -0.545 17.440 Atomic orbital electron populations 1.30036 1.21470 1.13825 1.13186 1.04543 0.79401 0.73186 0.73674 1.93566 1.79183 1.38622 1.86441 1.93491 1.79335 1.61971 1.61615 1.29718 1.22399 1.08965 1.18601 1.21161 0.89610 0.90549 1.00589 1.21608 1.03945 1.02688 0.91363 1.21698 0.90220 0.91242 1.00863 1.21694 1.07268 1.00793 0.96356 1.18831 0.88092 0.83886 0.94358 1.86101 1.70516 1.30951 1.37020 1.23086 0.99686 0.93464 0.83201 1.19016 0.94645 0.90492 0.97166 1.21419 1.38187 1.05576 0.92991 0.90865 1.26013 0.95172 0.98190 1.00260 1.70128 1.40343 1.19309 1.27203 0.85260 0.77966 0.78144 0.78814 1.17996 1.20620 1.20234 0.85329 0.82940 0.82127 0.81942 0.81438 0.81571 0.83888 0.90430 0.91750 0.98571 0.97450 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -13.61 10.73 113.37 1.22 -12.39 16 2 S 2.51 73.43 5.38 -56.49 -0.30 73.12 16 3 O -0.98 -39.51 17.23 -122.71 -2.11 -41.62 16 4 O -0.97 -29.12 16.74 -127.65 -2.14 -31.25 16 5 C -0.71 -20.55 5.59 22.36 0.13 -20.42 16 6 C 0.00 -0.01 9.50 22.25 0.21 0.20 16 7 C -0.18 -3.23 10.04 22.28 0.22 -3.00 16 8 C -0.02 -0.44 10.04 22.25 0.22 -0.21 16 9 C -0.24 -6.46 9.04 22.36 0.20 -6.26 16 10 C 0.20 6.39 6.62 22.50 0.15 6.54 16 11 O -0.33 -13.06 8.13 -83.11 -0.68 -13.73 16 12 C 0.08 3.24 4.68 71.98 0.34 3.57 16 13 C 0.02 1.27 5.34 29.85 0.16 1.43 16 14 C -0.54 -29.73 9.11 25.60 0.23 -29.50 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 16 C 0.00 0.13 5.46 84.65 0.46 0.59 16 17 N -0.93 -55.93 13.29 21.45 0.28 -55.65 16 18 Si 0.97 42.65 29.54 68.60 2.03 44.68 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 21 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 22 H 0.13 3.27 7.38 -2.39 -0.02 3.26 16 23 H 0.15 2.59 8.14 -2.39 -0.02 2.57 16 24 H 0.16 2.33 8.14 -2.39 -0.02 2.32 16 25 H 0.16 3.11 7.21 -2.91 -0.02 3.08 16 26 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 27 H 0.17 1.95 8.06 -2.91 -0.02 1.92 16 28 H 0.14 3.61 6.30 -2.91 -0.02 3.59 16 29 H 0.08 2.79 7.66 -2.39 -0.02 2.77 16 30 H 0.06 2.50 7.66 -2.39 -0.02 2.48 16 31 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -76.22 298.73 1.73 -74.49 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 1.11 Total: 9.41 kcal Atomic # 6 Polarization: -62.99 SS G_CDS: 3.54 Total: -59.44 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.28 Total: -55.65 kcal Atomic # 8 Polarization: -81.68 SS G_CDS: -4.93 Total: -86.61 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 73.43 SS G_CDS: -0.30 Total: 73.12 kcal Total: -76.22 1.73 -74.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000285196016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.499 kcal (2) G-P(sol) polarization free energy of solvation -76.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds