Wall clock time and date at job start Mon Mar 30 2020 00:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99936 * 2 1 4 4 H 1.48500 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46936 * 300.00219 * 3 2 1 6 6 H 1.48495 * 109.46904 * 60.00152 * 3 2 1 7 7 C 1.37881 * 120.00287 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99994 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99763 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47475 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47565 * 179.97438 * 10 9 7 12 12 C 1.39673 * 120.00003 * 179.97438 * 11 10 9 13 13 C 1.38909 * 120.06488 * 354.12899 * 12 11 10 14 14 C 1.38199 * 119.90764 * 179.80765 * 13 12 11 15 15 Cl 1.73597 * 119.97614 * 180.21005 * 14 13 12 16 16 C 1.38429 * 120.05189 * 0.44776 * 14 13 12 17 17 C 1.38240 * 120.13334 * 359.78217 * 16 14 13 18 18 C 1.38140 * 120.09085 * 0.02562 * 17 16 14 19 19 N 1.47996 * 120.02843 * 179.97438 * 18 17 16 20 20 O 1.21799 * 120.00354 * 142.54220 * 19 18 17 21 21 O 1.21801 * 119.99973 * 322.54425 * 19 18 17 22 22 H 0.96992 * 119.99980 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47597 * 60.00191 * 9 7 2 24 24 H 1.09007 * 109.47305 * 300.00171 * 9 7 2 25 25 H 1.08994 * 109.47001 * 59.99680 * 10 9 7 26 26 H 1.09011 * 109.46619 * 299.99935 * 10 9 7 27 27 H 0.97000 * 119.99462 * 0.02562 * 11 10 9 28 28 H 1.07993 * 120.04753 * 0.02562 * 13 12 11 29 29 H 1.07997 * 119.93396 * 179.76823 * 16 14 13 30 30 H 1.07998 * 119.96249 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5129 -4.9308 0.0001 12 6 2.2113 -6.1404 -0.0003 13 6 3.5948 -6.1451 -0.1243 14 6 4.2829 -7.3436 -0.1204 15 17 6.0124 -7.3513 -0.2697 16 6 3.5937 -8.5383 -0.0023 17 6 2.2164 -8.5361 0.1164 18 6 1.5232 -7.3413 0.1171 19 7 0.0486 -7.3406 0.2436 20 8 -0.5065 -6.4726 0.8932 21 8 -0.6098 -8.2081 -0.3017 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.8720 -3.6043 0.8894 26 1 2.8720 -3.6043 -0.8906 27 1 0.5429 -4.9308 0.0000 28 1 4.1323 -5.2134 -0.2201 29 1 4.1330 -9.4740 -0.0032 30 1 1.6814 -9.4698 0.2079 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286941324.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:18 Heat of formation + Delta-G solvation = -10.250112 kcal Electronic energy + Delta-G solvation = -17701.738742 eV Core-core repulsion = 14525.063075 eV Total energy + Delta-G solvation = -3176.675666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.31674 -40.78753 -38.15770 -37.67120 -37.13254 -35.16765 -32.92353 -32.39932 -30.05639 -27.43656 -26.65189 -24.28832 -23.35550 -22.45002 -20.32716 -19.82954 -19.06867 -18.73671 -18.12384 -17.11920 -16.51483 -16.30052 -16.13242 -15.49637 -15.41730 -14.83635 -14.30165 -14.06408 -13.45141 -13.40673 -12.93340 -12.89927 -12.75197 -12.50368 -12.40393 -12.33304 -12.21468 -12.12481 -11.67008 -11.41116 -11.29944 -10.63183 -10.38585 -8.97858 -8.26778 -6.39480 -1.12898 -0.01059 0.09650 0.36767 0.81776 1.40993 1.41450 1.54440 2.03842 2.15367 2.40640 3.08686 3.21499 3.71093 3.74969 3.85324 4.20996 4.27390 4.36598 4.46608 4.68521 4.73139 4.93067 5.09344 5.22082 5.35948 5.46261 5.63565 5.83420 6.04169 6.22863 6.44791 6.76361 7.31299 8.85966 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.016932 B = 0.004955 C = 0.003866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.272299 B = 5649.239531 C = 7240.158682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.256 1.256 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.073 0.927 9 C 0.017 3.983 10 C 0.135 3.865 11 N -0.721 5.721 12 C 0.279 3.721 13 C -0.198 4.198 14 C 0.062 3.938 15 Cl -0.033 7.033 16 C -0.159 4.159 17 C 0.007 3.993 18 C -0.145 4.145 19 N 0.042 4.958 20 O -0.230 6.230 21 O -0.143 6.143 22 H 0.265 0.735 23 H -0.003 1.003 24 H -0.002 1.002 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.404 0.596 28 H 0.158 0.842 29 H 0.188 0.812 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.463 -18.274 -0.613 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.180 1.180 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.579 4.579 8 H 0.091 0.909 9 C -0.021 4.021 10 C 0.012 3.988 11 N -0.347 5.347 12 C 0.165 3.835 13 C -0.222 4.222 14 C 0.034 3.966 15 Cl -0.003 7.003 16 C -0.180 4.180 17 C -0.013 4.013 18 C -0.235 4.235 19 N 0.554 4.446 20 O -0.427 6.427 21 O -0.368 6.368 22 H 0.074 0.926 23 H 0.015 0.985 24 H 0.017 0.983 25 H 0.089 0.911 26 H 0.091 0.909 27 H 0.242 0.758 28 H 0.175 0.825 29 H 0.205 0.795 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.230 -17.804 -0.604 21.609 hybrid contribution -0.983 1.248 0.048 1.590 sum 11.247 -16.556 -0.556 20.023 Atomic orbital electron populations 1.70111 1.08019 1.28021 1.50984 1.25996 0.95705 1.03608 0.94369 0.85312 0.79253 0.78337 0.77625 1.17958 1.20591 1.20605 1.21469 0.93923 0.91104 1.51450 0.90878 1.19142 0.94531 0.92693 0.95701 1.21632 0.95209 0.80480 1.01433 1.45797 1.09949 1.03587 1.75333 1.17605 0.91922 0.84282 0.89674 1.20651 0.90091 1.00021 1.11441 1.21053 0.86319 0.94212 0.95054 1.98421 1.07726 1.98873 1.95314 1.21083 0.91843 0.98516 1.06529 1.20946 0.94222 0.95477 0.90607 1.20789 0.77794 0.96878 1.28049 1.43747 1.04339 0.99111 0.97419 1.94562 1.74345 1.32746 1.41050 1.94459 1.65689 1.31153 1.45518 0.92621 0.98506 0.98339 0.91087 0.90949 0.75760 0.82467 0.79522 0.80411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.97 42.60 29.54 68.60 2.03 44.62 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.02 0.85 5.09 29.85 0.15 1.00 16 10 C 0.13 5.15 4.90 86.38 0.42 5.57 16 11 N -0.72 -25.69 5.51 -339.42 -1.87 -27.56 16 12 C 0.28 8.21 6.60 38.21 0.25 8.46 16 13 C -0.20 -4.75 9.10 22.42 0.20 -4.54 16 14 C 0.06 1.15 6.32 22.31 0.14 1.29 16 15 Cl -0.03 -0.53 28.95 -2.72 -0.08 -0.60 16 16 C -0.16 -2.33 9.83 22.32 0.22 -2.11 16 17 C 0.01 0.13 9.66 22.25 0.21 0.34 16 18 C -0.15 -3.99 6.51 36.51 0.24 -3.75 16 19 N 0.04 1.37 4.29 -46.16 -0.20 1.17 16 20 O -0.23 -8.77 16.74 18.89 0.32 -8.45 16 21 O -0.14 -4.54 18.95 18.88 0.36 -4.18 16 22 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 23 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 24 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 25 H 0.07 2.57 8.13 -2.39 -0.02 2.55 16 26 H 0.07 2.56 7.73 -2.38 -0.02 2.54 16 27 H 0.40 15.81 6.07 -92.71 -0.56 15.25 16 28 H 0.16 3.68 6.73 -2.91 -0.02 3.66 16 29 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 30 H 0.18 2.32 8.01 -2.91 -0.02 2.29 16 Total: -1.00 -63.90 288.21 4.00 -59.91 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.62 Total: 12.44 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: 2.54 Total: -21.99 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -1.78 Total: -81.74 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.67 Total: -12.63 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -0.08 Total: -0.60 kcal Total: -63.90 4.00 -59.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286941324.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.656 kcal (2) G-P(sol) polarization free energy of solvation -63.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds