Wall clock time and date at job start Mon Mar 30 2020 01:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46572 * 2 1 4 4 C 1.50695 * 109.47005 * 239.99899 * 2 1 3 5 5 H 1.08000 * 119.99797 * 239.99584 * 4 2 1 6 6 C 1.37871 * 120.00206 * 60.00310 * 4 2 1 7 7 N 1.31519 * 120.00076 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00305 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46610 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46782 * 119.99849 * 8 6 4 11 11 H 1.48495 * 109.47453 * 240.00150 * 8 6 4 12 12 N 1.46496 * 109.46670 * 119.99513 * 2 1 3 13 13 C 1.39673 * 120.00511 * 275.00053 * 12 2 1 14 14 C 1.38908 * 120.06543 * 5.64953 * 13 12 2 15 15 C 1.38193 * 119.91273 * 180.02562 * 14 13 12 16 16 Cl 1.73601 * 119.97814 * 179.97438 * 15 14 13 17 17 C 1.38435 * 120.04987 * 359.97438 * 15 14 13 18 18 C 1.38247 * 120.13265 * 0.02562 * 17 15 14 19 19 C 1.38131 * 120.08784 * 359.97438 * 18 17 15 20 20 N 1.48005 * 120.02328 * 180.27512 * 19 18 17 21 21 O 1.21796 * 119.99933 * 353.83406 * 20 19 18 22 22 O 1.21803 * 120.00088 * 173.83453 * 20 19 18 23 23 H 1.09003 * 109.47200 * 60.00026 * 1 2 3 24 24 H 1.09001 * 109.47269 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47543 * 300.00017 * 1 2 3 26 26 H 0.96997 * 120.00081 * 180.02562 * 7 6 4 27 27 H 0.97007 * 120.00053 * 95.00541 * 12 2 1 28 28 H 1.07999 * 120.04205 * 0.02562 * 14 13 12 29 29 H 1.07993 * 119.93539 * 180.02562 * 17 15 14 30 30 H 1.07994 * 119.95625 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1196 -4.0079 9 1 3.1473 -2.2864 -3.6037 10 1 1.1678 -1.5866 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 7 2.0182 -0.6905 1.1962 13 6 2.1516 0.0063 2.3994 14 6 1.7125 1.3206 2.4948 15 6 1.8465 2.0072 3.6865 16 17 1.2988 3.6502 3.8074 17 6 2.4171 1.3859 4.7842 18 6 2.8548 0.0778 4.6914 19 6 2.7236 -0.6137 3.5029 20 7 3.1871 -2.0160 3.4070 21 8 3.7851 -2.5248 4.3381 22 8 2.9706 -2.6613 2.3969 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7082 1.1608 -3.4844 27 1 2.2490 -1.6317 1.1527 28 1 1.2669 1.8053 1.6386 29 1 2.5205 1.9241 5.7147 30 1 3.2999 -0.4040 5.5494 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000288099950.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:19 Heat of formation + Delta-G solvation = 1.662512 kcal Electronic energy + Delta-G solvation = -18330.833225 eV Core-core repulsion = 15154.674129 eV Total energy + Delta-G solvation = -3176.159096 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.27160 -40.72706 -38.26148 -37.66282 -37.17480 -34.81218 -32.81336 -31.82804 -29.66312 -27.47424 -27.10026 -24.37240 -23.56875 -22.11161 -20.26099 -19.76275 -19.10823 -18.59215 -18.11813 -17.31780 -16.52772 -16.11605 -15.66041 -15.33418 -15.12800 -14.40779 -14.06603 -14.02209 -13.33593 -13.24753 -12.93737 -12.81220 -12.67264 -12.59106 -12.38847 -12.32747 -12.23283 -12.06767 -11.93827 -11.34784 -11.12887 -10.61371 -10.34348 -8.78049 -8.27798 -6.43053 -1.14682 0.18030 0.27961 0.45729 0.86658 1.37874 1.41154 1.52156 2.23757 2.27796 2.48642 3.03085 3.29206 3.79665 3.85158 3.92316 4.38694 4.55877 4.60250 4.75083 4.84474 4.91604 4.99170 5.13729 5.23510 5.44371 5.53610 5.71097 5.96214 6.17108 6.48313 6.62851 6.84402 7.28122 8.77598 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.016490 B = 0.006642 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.596263 B = 4214.841144 C = 5669.329588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.263 3.737 3 H 0.028 0.972 4 C -0.556 4.556 5 H 0.055 0.945 6 C 0.029 3.971 7 N -0.905 5.905 8 Si 0.962 3.038 9 H -0.273 1.273 10 H -0.275 1.275 11 H -0.276 1.276 12 N -0.691 5.691 13 C 0.286 3.714 14 C -0.211 4.211 15 C 0.069 3.931 16 Cl -0.037 7.037 17 C -0.170 4.170 18 C 0.014 3.986 19 C -0.159 4.159 20 N 0.058 4.942 21 O -0.151 6.151 22 O -0.258 6.258 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.035 0.965 26 H 0.269 0.731 27 H 0.412 0.588 28 H 0.144 0.856 29 H 0.189 0.811 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.067 4.501 14.207 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.160 3.840 3 H 0.046 0.954 4 C -0.594 4.594 5 H 0.073 0.927 6 C -0.173 4.173 7 N -0.543 5.543 8 Si 0.788 3.212 9 H -0.197 1.197 10 H -0.200 1.200 11 H -0.202 1.202 12 N -0.322 5.322 13 C 0.166 3.834 14 C -0.235 4.235 15 C 0.040 3.960 16 Cl -0.007 7.007 17 C -0.191 4.191 18 C -0.005 4.005 19 C -0.252 4.252 20 N 0.560 4.440 21 O -0.373 6.373 22 O -0.443 6.443 23 H 0.096 0.904 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.259 0.741 28 H 0.161 0.839 29 H 0.206 0.794 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 0.610 5.319 13.687 14.697 hybrid contribution 0.284 -1.045 -1.344 1.726 sum 0.895 4.274 12.343 13.093 Atomic orbital electron populations 1.22039 0.97318 0.99735 1.01009 1.18762 0.91742 0.92575 0.80913 0.95387 1.21443 1.33003 1.13633 0.91292 0.92664 1.25552 0.94669 0.95535 1.01532 1.69946 1.36252 1.23238 1.24888 0.85433 0.78325 0.78563 0.78923 1.19736 1.20013 1.20178 1.46922 1.63459 1.14818 1.06961 1.17842 0.88453 0.91697 0.85366 1.20661 1.10140 0.92730 0.99925 1.21103 0.94008 0.86795 0.94115 1.98405 1.87551 1.16632 1.98120 1.21048 1.04383 0.93893 0.99776 1.21009 0.91922 0.93119 0.94447 1.20790 1.21602 0.83069 0.99765 1.43605 0.97741 1.03342 0.99269 1.94406 1.39047 1.73283 1.30556 1.94256 1.65068 1.63188 1.21798 0.90446 0.95250 0.94630 0.92125 0.74118 0.83880 0.79417 0.79751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.50 9.10 71.98 0.65 -5.85 16 2 C 0.26 12.59 2.23 44.25 0.10 12.69 16 3 H 0.03 1.44 6.75 -2.39 -0.02 1.42 16 4 C -0.56 -29.54 8.73 25.60 0.22 -29.32 16 5 H 0.06 2.99 7.74 -2.91 -0.02 2.97 16 6 C 0.03 1.49 5.30 84.65 0.45 1.94 16 7 N -0.91 -48.35 11.32 21.45 0.24 -48.11 16 8 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 9 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.69 -29.74 5.12 -322.54 -1.65 -31.39 16 13 C 0.29 10.40 6.62 38.21 0.25 10.65 16 14 C -0.21 -6.77 8.48 22.42 0.19 -6.58 16 15 C 0.07 1.68 6.32 22.31 0.14 1.82 16 16 Cl -0.04 -0.78 28.95 -2.72 -0.08 -0.86 16 17 C -0.17 -3.25 9.83 22.32 0.22 -3.04 16 18 C 0.01 0.32 9.55 22.25 0.21 0.54 16 19 C -0.16 -5.13 6.86 36.51 0.25 -4.88 16 20 N 0.06 2.12 4.45 -46.15 -0.21 1.91 16 21 O -0.15 -5.07 18.46 18.89 0.35 -4.72 16 22 O -0.26 -10.70 15.71 18.88 0.30 -10.40 16 23 H 0.08 3.85 6.07 -2.39 -0.01 3.84 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.03 1.42 7.21 -2.39 -0.02 1.41 16 26 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 27 H 0.41 18.43 4.98 -98.76 -0.49 17.94 16 28 H 0.14 5.04 5.86 -2.91 -0.02 5.02 16 29 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.19 2.98 7.62 -2.91 -0.02 2.96 16 Total: -1.00 -57.41 278.62 4.38 -53.03 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 0.71 Total: 18.51 kcal Atomic # 6 Polarization: -24.71 SS G_CDS: 2.69 Total: -22.02 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -1.61 Total: -77.58 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: 0.65 Total: -15.13 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -0.08 Total: -0.86 kcal Total: -57.41 4.38 -53.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000288099950.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.697 kcal (2) G-P(sol) polarization free energy of solvation -57.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds