Wall clock time and date at job start Mon Mar 30 2020 00:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48504 * 109.46636 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00355 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.39577 * 119.99870 * 180.27881 * 13 11 10 15 15 N 1.32311 * 119.71817 * 359.44651 * 14 13 11 16 16 C 1.32030 * 121.67109 * 179.71899 * 15 14 13 17 17 Cl 1.73603 * 119.54051 * 180.29293 * 16 15 14 18 18 C 1.38240 * 120.92118 * 0.55726 * 16 15 14 19 19 C 1.38736 * 119.34616 * 359.73542 * 18 16 15 20 20 C 1.38821 * 118.45608 * 359.97438 * 19 18 16 21 21 O 1.35999 * 120.47881 * 179.97438 * 20 19 18 22 22 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 24 24 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 25 25 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 26 26 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 27 27 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 28 28 H 1.08002 * 120.33027 * 179.74951 * 18 16 15 29 29 H 1.07994 * 120.77477 * 179.97438 * 19 18 16 30 30 H 0.96695 * 114.00154 * 270.02245 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4680 -7.3431 -0.0072 15 7 0.1449 -7.3367 -0.0026 16 6 -0.5538 -8.4569 -0.0140 17 17 -2.2883 -8.3838 -0.0149 18 6 0.0765 -9.6872 -0.0196 19 6 1.4628 -9.7410 -0.0189 20 6 2.1711 -8.5470 -0.0130 21 8 3.5311 -8.5518 -0.0115 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8898 25 1 2.8721 -3.6043 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 3.1359 -6.1343 -0.0004 28 1 -0.5045 -10.5976 -0.0248 29 1 1.9790 -10.6895 -0.0228 30 1 3.9234 -8.5573 0.8723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292858863.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:36 Heat of formation + Delta-G solvation = -44.127172 kcal Electronic energy + Delta-G solvation = -17600.102738 eV Core-core repulsion = 14421.958052 eV Total energy + Delta-G solvation = -3178.144686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.07562 -38.95437 -37.67538 -36.48497 -34.68298 -33.49509 -32.13564 -31.03342 -29.37721 -25.99062 -24.14014 -23.38292 -21.61714 -19.93955 -18.84923 -18.09893 -17.30037 -16.46648 -16.10145 -15.66029 -15.35406 -15.04886 -14.44736 -14.18824 -13.78258 -13.37861 -13.22297 -12.65652 -12.21826 -11.82854 -11.70130 -11.23079 -11.22413 -10.93134 -10.64194 -10.63068 -10.06446 -10.00139 -9.76458 -9.64341 -9.15809 -8.86170 -8.34299 -8.24487 -5.97038 -4.02214 0.61595 0.95405 1.70274 2.94934 2.99142 3.34011 3.38987 3.40495 3.50040 3.75933 4.26907 4.46045 4.66556 4.78771 4.92718 5.33788 5.37805 5.55745 5.61777 5.88728 6.11888 6.13226 6.45211 6.77058 7.14246 7.23900 7.71454 7.81682 7.84644 8.04255 8.34601 8.60486 9.05503 9.61512 11.13790 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026894 B = 0.004085 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.889574 B = 6852.863730 C = 7870.760429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.126 4.126 11 C 0.494 3.506 12 O -0.458 6.458 13 N -0.663 5.663 14 C 0.375 3.625 15 N -0.458 5.458 16 C 0.204 3.796 17 Cl -0.024 7.024 18 C -0.184 4.184 19 C -0.060 4.060 20 C 0.010 3.990 21 O -0.484 6.484 22 H 0.262 0.738 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.420 0.580 28 H 0.148 0.852 29 H 0.152 0.848 30 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -22.192 1.608 22.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.568 4.568 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.166 4.166 11 C 0.281 3.719 12 O -0.324 6.324 13 N -0.311 5.311 14 C 0.140 3.860 15 N -0.176 5.176 16 C 0.038 3.962 17 Cl 0.004 6.996 18 C -0.207 4.207 19 C -0.086 4.086 20 C -0.041 4.041 21 O -0.292 6.292 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.043 0.957 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.257 0.743 28 H 0.165 0.835 29 H 0.170 0.830 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.559 -21.087 1.009 21.409 hybrid contribution 1.311 0.147 0.486 1.405 sum 4.870 -20.940 1.495 21.550 Atomic orbital electron populations 1.69989 1.06062 1.26781 1.49839 1.25020 0.94823 0.99238 0.95214 0.86638 0.79533 0.83130 0.78540 1.20231 1.21264 1.20241 1.21142 0.92885 0.90894 1.51855 0.92587 1.18928 0.93125 0.89223 0.98843 1.21930 1.00865 0.90926 1.02873 1.22070 0.89318 0.84992 0.75477 1.90811 1.13622 1.86214 1.41741 1.44267 1.10852 1.03385 1.72612 1.18807 0.87466 0.86411 0.93281 1.66983 1.05397 1.29575 1.15668 1.21485 0.87984 0.89122 0.97567 1.98418 1.06333 1.98613 1.96226 1.21618 0.94415 0.97611 1.07041 1.21599 0.93271 0.98139 0.95615 1.18799 0.84155 0.91306 1.09805 1.84924 1.14592 1.96081 1.33587 0.92831 0.95636 0.95660 0.89833 0.89788 0.74271 0.83470 0.83040 0.75598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.29 55.43 0.74 -26.68 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 10 C -0.13 -2.49 5.64 -27.89 -0.16 -2.65 16 11 C 0.49 9.61 7.79 -10.98 -0.09 9.53 16 12 O -0.46 -11.04 14.23 5.55 0.08 -10.96 16 13 N -0.66 -9.74 5.39 -11.30 -0.06 -9.80 16 14 C 0.37 5.55 7.44 -154.43 -1.15 4.40 16 15 N -0.46 -7.97 7.85 -9.35 -0.07 -8.05 16 16 C 0.20 2.88 7.27 -17.47 -0.13 2.76 16 17 Cl -0.02 -0.33 29.10 -51.86 -1.51 -1.84 16 18 C -0.18 -1.85 9.86 -39.40 -0.39 -2.24 16 19 C -0.06 -0.53 10.12 -39.18 -0.40 -0.93 16 20 C 0.01 0.11 6.75 -38.93 -0.26 -0.15 16 21 O -0.48 -3.94 12.76 -19.74 -0.25 -4.19 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 24 H 0.02 0.74 8.10 -51.92 -0.42 0.32 16 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 27 H 0.42 4.51 8.04 -40.82 -0.33 4.18 16 28 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.39 1.33 9.06 45.56 0.41 1.74 16 LS Contribution 288.95 15.07 4.35 4.35 Total: -1.00 -36.46 288.95 -6.83 -43.29 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: -1.99 Total: -0.68 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.10 Total: -2.02 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.60 Total: -44.52 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.17 Total: -15.15 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.51 Total: -1.84 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -36.46 -6.83 -43.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292858863.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.839 kcal (2) G-P(sol) polarization free energy of solvation -36.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds