Wall clock time and date at job start Mon Mar 30 2020 00:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99601 * 2 1 4 4 H 1.48504 * 109.46636 * 239.99914 * 3 2 1 5 5 H 1.48498 * 109.47594 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47239 * 120.00355 * 3 2 1 7 7 C 1.37871 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00445 * 359.97438 * 7 2 1 10 10 C 1.52990 * 109.47398 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47398 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99488 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00290 * 180.02562 * 11 10 9 14 14 C 1.39577 * 119.99870 * 180.27881 * 13 11 10 15 15 N 1.32311 * 119.71817 * 359.44651 * 14 13 11 16 16 C 1.32030 * 121.67109 * 179.71899 * 15 14 13 17 17 Cl 1.73603 * 119.54051 * 180.29293 * 16 15 14 18 18 C 1.38240 * 120.92118 * 0.55726 * 16 15 14 19 19 C 1.38736 * 119.34616 * 359.73542 * 18 16 15 20 20 C 1.38821 * 118.45608 * 359.97438 * 19 18 16 21 21 O 1.35999 * 120.47881 * 179.97438 * 20 19 18 22 22 H 0.96991 * 119.99897 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.46954 * 59.99756 * 9 7 2 24 24 H 1.09011 * 109.46800 * 300.00341 * 9 7 2 25 25 H 1.08998 * 109.47508 * 59.99800 * 10 9 7 26 26 H 1.09002 * 109.47337 * 300.00085 * 10 9 7 27 27 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 28 28 H 1.08002 * 120.33027 * 179.74951 * 18 16 15 29 29 H 1.07994 * 120.77477 * 179.97438 * 19 18 16 30 30 H 0.96695 * 114.00154 * 270.02245 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2792 -4.9672 -0.0011 13 7 2.1659 -6.1344 -0.0008 14 6 1.4680 -7.3431 -0.0072 15 7 0.1449 -7.3367 -0.0026 16 6 -0.5538 -8.4569 -0.0140 17 17 -2.2883 -8.3838 -0.0149 18 6 0.0765 -9.6872 -0.0196 19 6 1.4628 -9.7410 -0.0189 20 6 2.1711 -8.5470 -0.0130 21 8 3.5311 -8.5518 -0.0115 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8898 25 1 2.8721 -3.6043 0.8894 26 1 2.8721 -3.6043 -0.8905 27 1 3.1359 -6.1343 -0.0004 28 1 -0.5045 -10.5976 -0.0248 29 1 1.9790 -10.6895 -0.0228 30 1 3.9234 -8.5573 0.8723 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292858863.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:35 Heat of formation + Delta-G solvation = -72.656688 kcal Electronic energy + Delta-G solvation = -17601.339871 eV Core-core repulsion = 14421.958052 eV Total energy + Delta-G solvation = -3179.381819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.10717 -40.31156 -38.48000 -37.44406 -35.97261 -35.53976 -33.30731 -32.74249 -30.44666 -27.85232 -25.35901 -24.42575 -23.29157 -21.35490 -19.73575 -19.08183 -18.86447 -18.06143 -17.06913 -16.96631 -16.68205 -16.42126 -16.20841 -15.30686 -15.04663 -14.50594 -14.29683 -14.20413 -14.00216 -13.28443 -12.96664 -12.75316 -12.62520 -12.51449 -12.17600 -11.92931 -11.67821 -11.65643 -11.38727 -11.24597 -10.76123 -10.55897 -10.14746 -9.25610 -8.17867 -6.32565 -0.29374 0.08658 0.75785 1.42403 1.47166 1.54838 1.63755 1.80775 2.43280 2.52340 2.94816 3.15286 3.34890 3.75140 3.93476 4.07152 4.22191 4.46792 4.51523 4.71360 4.83564 5.02918 5.11489 5.42994 5.49989 5.60232 5.84008 6.05961 6.15750 6.64622 6.79108 6.85813 7.26321 7.38033 8.94695 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026894 B = 0.004085 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.889574 B = 6852.863730 C = 7870.760429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.543 4.543 8 H 0.079 0.921 9 C 0.042 3.958 10 C -0.113 4.113 11 C 0.499 3.501 12 O -0.520 6.520 13 N -0.646 5.646 14 C 0.333 3.667 15 N -0.513 5.513 16 C 0.169 3.831 17 Cl -0.041 7.041 18 C -0.157 4.157 19 C -0.049 4.049 20 C 0.040 3.960 21 O -0.481 6.481 22 H 0.262 0.738 23 H -0.019 1.019 24 H -0.018 1.018 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.438 0.562 28 H 0.182 0.818 29 H 0.200 0.800 30 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.693 -24.212 1.742 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.004 3.996 10 C -0.153 4.153 11 C 0.287 3.713 12 O -0.391 6.391 13 N -0.296 5.296 14 C 0.100 3.900 15 N -0.231 5.231 16 C 0.005 3.995 17 Cl -0.012 7.012 18 C -0.179 4.179 19 C -0.075 4.075 20 C -0.011 4.011 21 O -0.293 6.293 22 H 0.071 0.929 23 H -0.001 1.001 24 H 0.001 0.999 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.280 0.720 28 H 0.200 0.800 29 H 0.217 0.783 30 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges 7.087 -23.177 1.162 24.264 hybrid contribution 0.296 0.595 0.452 0.804 sum 7.383 -22.581 1.614 23.813 Atomic orbital electron populations 1.70187 1.08414 1.27878 1.51385 1.26156 0.95682 1.04034 0.94584 0.85354 0.78010 0.77224 0.79534 1.18653 1.21505 1.18525 1.21671 0.94091 0.91401 1.50947 0.90267 1.18697 0.93700 0.92498 0.94717 1.21673 0.99301 0.88843 1.05480 1.21841 0.88450 0.86281 0.74736 1.90795 1.16021 1.87238 1.45053 1.43708 1.11496 1.02437 1.71976 1.19088 0.87290 0.87266 0.96335 1.66679 1.07347 1.32157 1.16961 1.21792 0.87534 0.89951 1.00273 1.98400 1.07697 1.98660 1.96481 1.22041 0.95341 0.97048 1.03465 1.22112 0.92571 0.99151 0.93631 1.18766 0.85201 0.90225 1.06882 1.84870 1.12809 1.95830 1.35816 0.92896 1.00099 0.99931 0.86871 0.87215 0.72044 0.80024 0.78288 0.72518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.35 13.29 21.45 0.28 -60.06 16 2 C -0.01 -0.42 5.46 84.65 0.46 0.05 16 3 Si 0.98 44.39 29.54 68.60 2.03 46.42 16 4 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.33 4.26 29.85 0.13 2.46 16 10 C -0.11 -4.49 5.64 29.85 0.17 -4.32 16 11 C 0.50 20.00 7.79 87.66 0.68 20.69 16 12 O -0.52 -26.86 14.23 -3.04 -0.04 -26.91 16 13 N -0.65 -18.53 5.39 -308.04 -1.66 -20.19 16 14 C 0.33 9.60 7.44 132.96 0.99 10.59 16 15 N -0.51 -18.30 7.85 -183.49 -1.44 -19.74 16 16 C 0.17 4.74 7.27 84.66 0.62 5.36 16 17 Cl -0.04 -1.15 29.10 -2.72 -0.08 -1.23 16 18 C -0.16 -2.68 9.86 22.39 0.22 -2.46 16 19 C -0.05 -0.64 10.12 22.53 0.23 -0.41 16 20 C 0.04 0.73 6.75 22.69 0.15 0.88 16 21 O -0.48 -5.62 12.76 -93.54 -1.19 -6.81 16 22 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 23 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 24 H -0.02 -1.13 8.10 -2.38 -0.02 -1.15 16 25 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 26 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 27 H 0.44 8.45 8.04 -92.71 -0.75 7.70 16 28 H 0.18 1.78 8.06 -2.91 -0.02 1.76 16 29 H 0.20 0.80 8.06 -2.91 -0.02 0.77 16 30 H 0.41 0.74 9.06 -74.06 -0.67 0.07 16 Total: -1.00 -86.79 288.95 1.56 -85.23 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -0.21 Total: 1.14 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 3.88 Total: 2.17 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -2.82 Total: -100.00 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.24 Total: -33.72 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 17 Polarization: -1.15 SS G_CDS: -0.08 Total: -1.23 kcal Total: -86.79 1.56 -85.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292858863.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.572 kcal (2) G-P(sol) polarization free energy of solvation -86.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds