Wall clock time and date at job start Mon Mar 30 2020 00:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99815 * 2 1 4 4 H 1.48499 * 109.47361 * 270.00396 * 3 2 1 5 5 H 1.48504 * 109.46590 * 30.00418 * 3 2 1 6 6 H 1.48496 * 109.46979 * 150.00181 * 3 2 1 7 7 C 1.37876 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99737 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00415 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47572 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47584 * 179.97438 * 10 9 7 12 12 C 1.39747 * 111.00217 * 174.85934 * 11 10 9 13 13 C 1.39037 * 120.07300 * 84.34148 * 12 11 10 14 14 Cl 1.73594 * 120.05074 * 0.02562 * 13 12 11 15 15 C 1.38172 * 119.90222 * 180.29831 * 13 12 11 16 16 C 1.38316 * 120.06296 * 359.67996 * 15 13 12 17 17 C 1.38253 * 120.15346 * 0.04726 * 16 15 13 18 18 C 1.38155 * 120.09678 * 359.97438 * 17 16 15 19 19 N 1.48019 * 120.02902 * 180.02562 * 18 17 16 20 20 O 1.21789 * 120.00361 * 355.10448 * 19 18 17 21 21 O 1.21804 * 119.99311 * 174.83073 * 19 18 17 22 22 H 0.96994 * 120.00387 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47551 * 59.99769 * 9 7 2 24 24 H 1.09006 * 109.47255 * 300.00294 * 9 7 2 25 25 H 1.09008 * 109.46925 * 59.99877 * 10 9 7 26 26 H 1.08993 * 109.47228 * 300.00337 * 10 9 7 27 27 H 1.00896 * 110.99995 * 298.82179 * 11 10 9 28 28 H 1.07999 * 119.96679 * 179.70541 * 15 13 12 29 29 H 1.08001 * 119.92397 * 180.02562 * 16 15 13 30 30 H 1.08007 * 119.94926 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 7 5.4907 -2.6363 -0.0022 12 6 5.9917 -3.9357 0.1148 13 6 6.1297 -4.7335 -1.0155 14 17 5.6806 -4.1170 -2.5749 15 6 6.6196 -6.0198 -0.8949 16 6 6.9785 -6.5110 0.3473 17 6 6.8476 -5.7179 1.4720 18 6 6.3580 -4.4309 1.3590 19 7 6.2190 -3.5828 2.5642 20 8 6.4511 -4.0472 3.6658 21 8 5.8772 -2.4189 2.4535 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6803 0.8888 24 1 3.8746 -0.6798 -0.8911 25 1 3.6580 -3.1504 -0.8908 26 1 3.6587 -3.1500 0.8891 27 1 5.8516 -2.1825 -0.8279 28 1 6.7228 -6.6421 -1.7715 29 1 7.3616 -7.5167 0.4388 30 1 7.1284 -6.1049 2.4405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292912006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:20 Heat of formation + Delta-G solvation = 24.240435 kcal Electronic energy + Delta-G solvation = -18222.628079 eV Core-core repulsion = 15047.448035 eV Total energy + Delta-G solvation = -3175.180044 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.90914 -39.91575 -36.92040 -36.55800 -35.82779 -33.08296 -31.95176 -30.99715 -28.74156 -26.29028 -24.44467 -22.92980 -22.03337 -20.60169 -19.15075 -18.29455 -17.41191 -17.18153 -16.74345 -16.16928 -15.71495 -15.00082 -14.60224 -14.15403 -13.90589 -13.16695 -12.94177 -12.57229 -12.40681 -12.04854 -11.63440 -11.38785 -11.16538 -11.11417 -10.82539 -10.69659 -10.28700 -10.15199 -9.82301 -9.70031 -9.32200 -9.26291 -8.53494 -8.41217 -6.04022 -4.03368 -0.15710 0.49703 1.40393 1.41387 1.84052 2.90235 3.34811 3.43165 3.51046 3.75788 4.18052 4.37059 4.48360 4.52347 4.70623 4.85910 5.30589 5.31118 5.40831 5.58055 5.82132 5.88643 5.99225 6.57034 6.59693 6.86444 7.15124 7.32370 7.51486 7.77926 8.00015 8.49940 8.97910 9.57615 11.09022 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.006227 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.353109 B = 4495.646904 C = 5463.814621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.258 1.258 7 C -0.523 4.523 8 H 0.070 0.930 9 C -0.006 4.006 10 C 0.087 3.913 11 N -0.639 5.639 12 C 0.191 3.809 13 C -0.091 4.091 14 Cl -0.034 7.034 15 C -0.050 4.050 16 C -0.126 4.126 17 C -0.045 4.045 18 C -0.033 4.033 19 N 0.026 4.974 20 O -0.203 6.203 21 O -0.081 6.081 22 H 0.264 0.736 23 H 0.037 0.963 24 H 0.012 0.988 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.360 0.640 28 H 0.149 0.851 29 H 0.153 0.847 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.603 -13.813 -2.948 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.561 4.561 8 H 0.088 0.912 9 C -0.044 4.044 10 C -0.037 4.037 11 N -0.269 5.269 12 C 0.089 3.911 13 C -0.122 4.122 14 Cl -0.005 7.005 15 C -0.070 4.070 16 C -0.146 4.146 17 C -0.064 4.064 18 C -0.118 4.118 19 N 0.549 4.451 20 O -0.404 6.404 21 O -0.315 6.315 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.031 0.969 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.183 0.817 28 H 0.166 0.834 29 H 0.170 0.830 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 16.505 -13.964 -2.919 21.815 hybrid contribution 0.103 0.776 -0.787 1.110 sum 16.608 -13.188 -3.705 21.528 Atomic orbital electron populations 1.69905 1.06357 1.27022 1.50841 1.24959 0.94709 0.99203 0.94258 0.86781 0.80857 0.83358 0.78459 1.20433 1.21353 1.18251 1.20958 0.89010 0.94572 1.51580 0.91213 1.19548 0.96742 0.90520 0.97607 1.22125 0.79368 1.02025 1.00200 1.58218 1.11892 1.09954 1.46809 1.18477 0.92180 0.90987 0.89439 1.21683 1.06797 0.95346 0.88354 1.98425 1.91014 1.87151 1.23905 1.21406 0.93276 0.93071 0.99210 1.21062 1.02123 1.00858 0.90520 1.21108 0.93584 0.90227 1.01512 1.20964 1.11964 0.93513 0.85344 1.43266 0.98700 1.01694 1.01446 1.94495 1.55924 1.77654 1.12356 1.94711 1.44672 0.99177 1.92893 0.92661 0.94433 0.96924 0.94289 0.91654 0.81654 0.83367 0.82957 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.52 -14.92 9.66 -34.44 -0.33 -15.25 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.72 16 9 C -0.01 -0.15 4.34 -27.89 -0.12 -0.27 16 10 C 0.09 1.73 5.22 -3.83 -0.02 1.71 16 11 N -0.64 -10.80 4.18 -58.33 -0.24 -11.04 16 12 C 0.19 2.75 5.25 -83.73 -0.44 2.31 16 13 C -0.09 -1.07 6.32 -39.31 -0.25 -1.32 16 14 Cl -0.03 -0.40 27.03 -51.86 -1.40 -1.80 16 15 C -0.05 -0.42 9.82 -39.58 -0.39 -0.81 16 16 C -0.13 -0.94 10.04 -39.55 -0.40 -1.33 16 17 C -0.04 -0.46 9.55 -39.61 -0.38 -0.83 16 18 C -0.03 -0.47 6.86 -79.75 -0.55 -1.01 16 19 N 0.03 0.46 4.45 34.06 0.15 0.61 16 20 O -0.20 -3.50 18.46 -29.46 -0.54 -4.04 16 21 O -0.08 -1.60 16.94 -29.46 -0.50 -2.10 16 22 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 23 H 0.04 0.94 7.20 -51.93 -0.37 0.56 16 24 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 25 H 0.04 0.76 7.51 -51.92 -0.39 0.37 16 26 H 0.06 1.40 8.11 -51.93 -0.42 0.97 16 27 H 0.36 5.57 7.78 -39.29 -0.31 5.26 16 28 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.15 0.58 8.06 -52.49 -0.42 0.15 16 30 H 0.16 1.33 7.62 -52.48 -0.40 0.93 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -32.48 283.97 -7.84 -40.31 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -2.71 Total: -1.43 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -2.97 Total: -14.84 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: 0.68 Total: -37.63 kcal Atomic # 8 Polarization: -5.10 SS G_CDS: -1.04 Total: -6.14 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.40 Total: -1.80 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -32.48 -7.84 -40.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292912006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.555 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds