Wall clock time and date at job start Mon Mar 30 2020 00:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99815 * 2 1 4 4 H 1.48499 * 109.47361 * 270.00396 * 3 2 1 5 5 H 1.48504 * 109.46590 * 30.00418 * 3 2 1 6 6 H 1.48496 * 109.46979 * 150.00181 * 3 2 1 7 7 C 1.37876 * 120.00536 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99737 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00415 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47572 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.47584 * 179.97438 * 10 9 7 12 12 C 1.39747 * 111.00217 * 174.85934 * 11 10 9 13 13 C 1.39037 * 120.07300 * 84.34148 * 12 11 10 14 14 Cl 1.73594 * 120.05074 * 0.02562 * 13 12 11 15 15 C 1.38172 * 119.90222 * 180.29831 * 13 12 11 16 16 C 1.38316 * 120.06296 * 359.67996 * 15 13 12 17 17 C 1.38253 * 120.15346 * 0.04726 * 16 15 13 18 18 C 1.38155 * 120.09678 * 359.97438 * 17 16 15 19 19 N 1.48019 * 120.02902 * 180.02562 * 18 17 16 20 20 O 1.21789 * 120.00361 * 355.10448 * 19 18 17 21 21 O 1.21804 * 119.99311 * 174.83073 * 19 18 17 22 22 H 0.96994 * 120.00387 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47551 * 59.99769 * 9 7 2 24 24 H 1.09006 * 109.47255 * 300.00294 * 9 7 2 25 25 H 1.09008 * 109.46925 * 59.99877 * 10 9 7 26 26 H 1.08993 * 109.47228 * 300.00337 * 10 9 7 27 27 H 1.00896 * 110.99995 * 298.82179 * 11 10 9 28 28 H 1.07999 * 119.96679 * 179.70541 * 15 13 12 29 29 H 1.08001 * 119.92397 * 180.02562 * 16 15 13 30 30 H 1.08007 * 119.94926 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1294 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6363 -0.0010 11 7 5.4907 -2.6363 -0.0022 12 6 5.9917 -3.9357 0.1148 13 6 6.1297 -4.7335 -1.0155 14 17 5.6806 -4.1170 -2.5749 15 6 6.6196 -6.0198 -0.8949 16 6 6.9785 -6.5110 0.3473 17 6 6.8476 -5.7179 1.4720 18 6 6.3580 -4.4309 1.3590 19 7 6.2190 -3.5828 2.5642 20 8 6.4511 -4.0472 3.6658 21 8 5.8772 -2.4189 2.4535 22 1 -0.4850 0.8400 0.0004 23 1 3.8753 -0.6803 0.8888 24 1 3.8746 -0.6798 -0.8911 25 1 3.6580 -3.1504 -0.8908 26 1 3.6587 -3.1500 0.8891 27 1 5.8516 -2.1825 -0.8279 28 1 6.7228 -6.6421 -1.7715 29 1 7.3616 -7.5167 0.4388 30 1 7.1284 -6.1049 2.4405 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292912006.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:20 Heat of formation + Delta-G solvation = 3.584879 kcal Electronic energy + Delta-G solvation = -18223.523772 eV Core-core repulsion = 15047.448035 eV Total energy + Delta-G solvation = -3176.075736 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.12973 -40.91412 -37.89964 -37.74040 -37.16792 -35.09493 -32.98339 -32.57057 -30.10127 -27.51015 -26.16867 -23.92507 -23.10703 -22.47391 -20.25290 -19.52404 -19.05339 -18.54010 -18.23002 -17.14178 -16.65668 -16.28112 -16.12461 -15.60367 -15.35903 -14.71513 -14.34689 -13.75498 -13.53440 -13.18572 -13.02396 -12.93254 -12.59709 -12.37069 -12.18809 -12.08307 -12.06205 -11.92376 -11.79597 -11.48852 -10.78038 -10.64512 -10.36143 -9.62398 -8.31547 -6.36383 -1.23230 -0.36132 0.28360 0.37698 0.87069 1.35491 1.39944 1.53856 2.06049 2.36579 2.64688 3.04531 3.38361 3.54173 3.76239 3.83119 3.99776 4.17794 4.30319 4.55709 4.74660 4.79307 4.84954 5.11331 5.15830 5.34139 5.43118 5.60122 5.77227 6.03946 6.22754 6.63510 6.69717 7.28508 8.84899 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.006227 C = 0.005123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.353109 B = 4495.646904 C = 5463.814621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.283 1.283 6 H -0.250 1.250 7 C -0.533 4.533 8 H 0.032 0.968 9 C 0.000 4.000 10 C 0.109 3.891 11 N -0.645 5.645 12 C 0.159 3.841 13 C -0.097 4.097 14 Cl -0.040 7.040 15 C -0.032 4.032 16 C -0.095 4.095 17 C -0.041 4.041 18 C -0.055 4.055 19 N 0.030 4.970 20 O -0.185 6.185 21 O -0.160 6.160 22 H 0.268 0.732 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.040 0.960 26 H 0.042 0.958 27 H 0.365 0.635 28 H 0.188 0.812 29 H 0.207 0.793 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.249 -16.061 -3.861 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.771 3.229 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.173 1.173 7 C -0.571 4.571 8 H 0.050 0.950 9 C -0.038 4.038 10 C -0.016 4.016 11 N -0.276 5.276 12 C 0.059 3.941 13 C -0.127 4.127 14 Cl -0.011 7.011 15 C -0.051 4.051 16 C -0.114 4.114 17 C -0.061 4.061 18 C -0.140 4.140 19 N 0.545 4.455 20 O -0.396 6.396 21 O -0.376 6.376 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.189 0.811 28 H 0.205 0.795 29 H 0.223 0.777 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 19.139 -16.112 -3.890 25.319 hybrid contribution -0.655 1.126 -0.492 1.393 sum 18.484 -14.986 -4.382 24.196 Atomic orbital electron populations 1.70047 1.08211 1.28280 1.52326 1.25912 0.95572 1.03346 0.93804 0.85684 0.79580 0.78246 0.79383 1.18641 1.20893 1.17316 1.21277 0.91492 0.93270 1.51089 0.94974 1.19382 0.93734 0.93300 0.97345 1.21586 0.82018 0.98971 0.99061 1.57871 1.09646 1.12641 1.47406 1.18522 0.94411 0.90485 0.90707 1.21782 1.07335 0.96395 0.87174 1.98426 1.91181 1.87517 1.23977 1.21964 0.90428 0.91512 1.01235 1.21701 0.98924 1.02134 0.88600 1.21575 0.92305 0.88425 1.03761 1.21264 1.14547 0.94608 0.83616 1.43732 0.97628 1.01728 1.02371 1.94429 1.54174 1.77245 1.13758 1.94718 1.48570 1.00934 1.93378 0.92352 0.95664 0.95634 0.94172 0.93958 0.81141 0.79482 0.77658 0.80456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.58 13.96 21.45 0.30 -60.29 16 2 C 0.01 0.66 5.47 84.65 0.46 1.12 16 3 Si 0.95 45.87 27.47 68.60 1.88 47.75 16 4 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.25 -11.63 6.54 99.48 0.65 -10.98 16 7 C -0.53 -31.68 9.66 25.60 0.25 -31.44 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C 0.00 0.01 4.34 29.84 0.13 0.14 16 10 C 0.11 4.54 5.22 86.30 0.45 4.99 16 11 N -0.65 -22.33 4.18 -338.44 -1.41 -23.74 16 12 C 0.16 4.50 5.25 38.21 0.20 4.70 16 13 C -0.10 -2.03 6.32 22.45 0.14 -1.89 16 14 Cl -0.04 -0.89 27.03 -2.72 -0.07 -0.96 16 15 C -0.03 -0.38 9.82 22.27 0.22 -0.16 16 16 C -0.10 -0.84 10.04 22.29 0.22 -0.61 16 17 C -0.04 -0.68 9.55 22.25 0.21 -0.47 16 18 C -0.05 -1.51 6.86 36.50 0.25 -1.26 16 19 N 0.03 1.07 4.45 -46.17 -0.21 0.86 16 20 O -0.19 -6.32 18.46 18.90 0.35 -5.97 16 21 O -0.16 -6.71 16.94 18.88 0.32 -6.39 16 22 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 23 H 0.02 1.30 7.20 -2.39 -0.02 1.28 16 24 H 0.03 1.18 7.57 -2.38 -0.02 1.16 16 25 H 0.04 1.62 7.51 -2.38 -0.02 1.60 16 26 H 0.04 1.92 8.11 -2.39 -0.02 1.90 16 27 H 0.36 11.46 7.78 -89.70 -0.70 10.76 16 28 H 0.19 0.83 8.06 -2.91 -0.02 0.81 16 29 H 0.21 -0.19 8.06 -2.91 -0.02 -0.22 16 30 H 0.18 2.22 7.62 -2.91 -0.02 2.20 16 Total: -1.00 -75.96 283.97 4.13 -71.83 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: 0.43 Total: 1.79 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 2.54 Total: -24.88 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.32 Total: -83.17 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.67 Total: -12.36 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.88 Total: 47.75 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.07 Total: -0.96 kcal Total: -75.96 4.13 -71.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292912006.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.415 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds