Wall clock time and date at job start Mon Mar 30 2020 00:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34754 * 116.99954 * 2 1 4 4 O 1.21507 * 119.99631 * 0.02562 * 3 2 1 5 5 C 1.47470 * 119.99914 * 180.02562 * 3 2 1 6 6 C 1.39801 * 120.08631 * 180.02562 * 5 3 2 7 7 C 1.37678 * 119.92451 * 180.27519 * 6 5 3 8 8 C 1.38991 * 120.11030 * 359.49219 * 7 6 5 9 9 O 1.35722 * 119.91228 * 180.25630 * 8 7 6 10 10 C 1.42897 * 117.00228 * 0.24974 * 9 8 7 11 11 C 1.50694 * 109.47334 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00250 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00300 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99549 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00153 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47219 * 59.99935 * 15 13 11 17 17 H 1.48502 * 109.47162 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47389 * 299.99667 * 15 13 11 19 19 C 1.39096 * 120.17520 * 0.50364 * 8 7 6 20 20 Cl 1.73602 * 119.96073 * 179.73095 * 19 8 7 21 21 C 1.37788 * 120.07046 * 359.75172 * 19 8 7 22 22 H 1.09005 * 109.46694 * 299.99684 * 1 2 3 23 23 H 1.08999 * 109.47036 * 59.99467 * 1 2 3 24 24 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 25 25 H 1.08002 * 120.03464 * 359.97438 * 6 5 3 26 26 H 1.08005 * 119.94896 * 179.73974 * 7 6 5 27 27 H 1.09006 * 109.47025 * 299.99949 * 10 9 8 28 28 H 1.08999 * 109.46914 * 59.99758 * 10 9 8 29 29 H 0.96998 * 119.99762 * 180.02562 * 14 13 11 30 30 H 1.08008 * 120.04866 * 180.02562 * 21 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5365 1.2778 -0.0006 6 6 4.1730 2.5225 0.0000 7 6 5.5481 2.5907 -0.0063 8 6 6.3041 1.4244 -0.0025 9 8 7.6594 1.4963 -0.0034 10 6 8.2398 2.8020 -0.0029 11 6 9.7421 2.6840 -0.0047 12 1 10.2073 1.7093 -0.0066 13 6 10.5230 3.8204 -0.0040 14 7 9.9566 5.0074 -0.0022 15 14 12.3852 3.6741 -0.0055 16 1 12.8229 2.9388 -1.2192 17 1 12.9884 5.0311 -0.0050 18 1 12.8248 2.9362 1.2058 19 6 5.6753 0.1836 -0.0029 20 17 6.6250 -1.2696 -0.0052 21 6 4.2996 0.1068 -0.0020 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.5867 3.4295 0.0004 26 1 6.0403 3.5521 -0.0101 27 1 7.9172 3.3435 -0.8922 28 1 7.9185 3.3421 0.8877 29 1 10.5059 5.8069 -0.0021 30 1 3.8117 -0.8568 -0.0019 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299138874.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:16 Heat of formation + Delta-G solvation = -128.239294 kcal Electronic energy + Delta-G solvation = -17500.452607 eV Core-core repulsion = 14286.367795 eV Total energy + Delta-G solvation = -3214.084812 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.74543 -40.86486 -38.51976 -37.58709 -37.23971 -35.07953 -32.17159 -31.87944 -29.74522 -28.43044 -25.71911 -24.63745 -23.39583 -21.97191 -19.63613 -18.82285 -18.63255 -18.01517 -17.39223 -17.03181 -16.71614 -16.44389 -16.13313 -15.23961 -15.05429 -14.67376 -14.58439 -14.06334 -13.93293 -13.56841 -13.04582 -12.99714 -12.93275 -12.54404 -12.51630 -12.15051 -12.10134 -12.00422 -11.79890 -11.62455 -11.42458 -10.71640 -10.12013 -9.34537 -8.39512 -6.52790 -0.44345 0.00305 1.08136 1.35978 1.41244 1.44609 1.52853 1.66330 2.18837 2.50418 2.50893 2.96292 3.55092 3.73718 3.80439 3.95673 4.21977 4.34734 4.38481 4.51808 4.65287 4.71477 4.78228 4.94400 5.00195 5.04612 5.28359 5.36646 5.50580 5.79218 6.36058 6.63671 6.65867 7.18194 8.71942 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.030723 B = 0.004243 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.142623 B = 6597.307352 C = 7488.002927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.525 3.475 4 O -0.534 6.534 5 C -0.178 4.178 6 C 0.001 3.999 7 C -0.220 4.220 8 C 0.170 3.830 9 O -0.310 6.310 10 C 0.205 3.795 11 C -0.557 4.557 12 H 0.067 0.933 13 C 0.016 3.984 14 N -0.922 5.922 15 Si 0.982 3.018 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.266 1.266 19 C -0.103 4.103 20 Cl -0.051 7.051 21 C 0.002 3.998 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.136 0.864 25 H 0.156 0.844 26 H 0.141 0.859 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.274 0.726 30 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 -10.049 0.002 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.271 6.271 3 C 0.372 3.628 4 O -0.426 6.426 5 C -0.179 4.179 6 C -0.017 4.017 7 C -0.239 4.239 8 C 0.120 3.880 9 O -0.222 6.222 10 C 0.132 3.868 11 C -0.594 4.594 12 H 0.085 0.915 13 C -0.184 4.184 14 N -0.560 5.560 15 Si 0.805 3.195 16 H -0.190 1.190 17 H -0.200 1.200 18 H -0.190 1.190 19 C -0.131 4.131 20 Cl -0.022 7.022 21 C -0.016 4.016 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.154 0.846 25 H 0.173 0.827 26 H 0.159 0.841 27 H 0.031 0.969 28 H 0.031 0.969 29 H 0.083 0.917 30 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.150 -9.859 0.002 18.075 hybrid contribution 0.803 0.579 0.001 0.990 sum -14.347 -9.280 0.003 17.086 Atomic orbital electron populations 1.23624 0.73983 1.06020 1.02758 1.86539 1.25464 1.31263 1.83862 1.20805 0.88412 0.81699 0.71846 1.90824 1.67078 1.36880 1.47831 1.18826 0.89503 0.94096 1.15524 1.21199 0.92866 0.97783 0.89855 1.21334 0.94652 0.97947 1.09954 1.19647 0.84551 0.93541 0.90251 1.86146 1.15705 1.35339 1.85017 1.20418 0.93342 0.77070 0.95975 1.21243 0.90244 0.94189 1.53753 0.91469 1.25851 1.04957 0.94056 0.93525 1.70022 1.38311 0.98354 1.49356 0.85236 0.77086 0.77771 0.79422 1.19039 1.19976 1.19030 1.20159 0.92119 0.85919 1.14873 1.98352 1.72571 1.34048 1.97261 1.21269 0.89357 0.99962 0.91028 0.91741 0.91748 0.84603 0.82686 0.84085 0.96854 0.96855 0.91702 0.80487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 113.37 1.20 1.59 16 2 O -0.36 -7.35 9.81 -56.64 -0.56 -7.90 16 3 C 0.53 13.67 7.89 70.26 0.55 14.22 16 4 O -0.53 -16.17 16.13 19.81 0.32 -15.85 16 5 C -0.18 -4.86 5.87 -20.10 -0.12 -4.98 16 6 C 0.00 0.04 9.58 22.52 0.22 0.25 16 7 C -0.22 -7.71 9.01 22.32 0.20 -7.51 16 8 C 0.17 6.53 6.69 22.66 0.15 6.68 16 9 O -0.31 -14.46 9.56 -90.45 -0.86 -15.32 16 10 C 0.20 10.62 4.49 71.23 0.32 10.93 16 11 C -0.56 -31.20 9.43 25.60 0.24 -30.96 16 12 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 13 C 0.02 0.88 5.46 84.66 0.46 1.34 16 14 N -0.92 -52.18 13.29 21.45 0.28 -51.89 16 15 Si 0.98 42.33 29.54 68.60 2.03 44.36 16 16 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 C -0.10 -3.35 6.32 22.37 0.14 -3.20 16 20 Cl -0.05 -1.60 28.49 -2.72 -0.08 -1.67 16 21 C 0.00 0.06 9.38 22.53 0.21 0.27 16 22 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.16 4.12 7.64 -2.91 -0.02 4.10 16 26 H 0.14 5.24 6.28 -2.91 -0.02 5.22 16 27 H 0.01 0.73 7.64 -2.38 -0.02 0.71 16 28 H 0.01 0.73 7.66 -2.39 -0.02 0.71 16 29 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 30 H 0.18 3.57 7.60 -2.91 -0.02 3.54 16 Total: -1.00 -62.63 290.20 5.88 -56.75 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: 1.17 Total: 2.88 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: 3.58 Total: -11.35 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.28 Total: -51.89 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -1.10 Total: -39.07 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 17 Polarization: -1.60 SS G_CDS: -0.08 Total: -1.67 kcal Total: -62.63 5.88 -56.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299138874.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.491 kcal (2) G-P(sol) polarization free energy of solvation -62.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds