Wall clock time and date at job start Mon Mar 30 2020 00:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00137 * 2 1 4 4 H 1.48500 * 109.47120 * 269.99865 * 3 2 1 5 5 H 1.48495 * 109.47030 * 30.00348 * 3 2 1 6 6 H 1.48507 * 109.46736 * 150.00116 * 3 2 1 7 7 C 1.37886 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99553 * 172.23620 * 7 2 1 9 9 C 1.50703 * 119.99783 * 352.23025 * 7 2 1 10 10 C 1.53001 * 115.54923 * 84.99857 * 9 7 2 11 11 O 1.42907 * 109.46750 * 39.68233 * 10 9 7 12 12 C 1.35929 * 116.99475 * 175.71649 * 11 10 9 13 13 C 1.38672 * 120.04569 * 5.18250 * 12 11 10 14 14 C 1.38369 * 119.93301 * 179.97438 * 13 12 11 15 15 F 1.35087 * 119.98969 * 180.02562 * 14 13 12 16 16 C 1.38499 * 120.02089 * 0.02562 * 14 13 12 17 17 C 1.38218 * 120.09780 * 359.97438 * 16 14 13 18 18 C 1.38264 * 120.06323 * 359.74569 * 17 16 14 19 19 Cl 1.73603 * 120.01272 * 180.27751 * 18 17 16 20 20 C 1.53002 * 117.51383 * 230.69743 * 9 7 2 21 21 C 1.52994 * 117.49949 * 299.32717 * 9 7 2 22 22 H 0.96994 * 119.99361 * 5.04642 * 1 2 3 23 23 H 1.09000 * 109.47127 * 159.67970 * 10 9 7 24 24 H 1.08998 * 109.47056 * 279.68660 * 10 9 7 25 25 H 1.07996 * 120.03689 * 359.95545 * 13 12 11 26 26 H 1.07997 * 119.95025 * 179.97438 * 16 14 13 27 27 H 1.08001 * 119.97016 * 180.02562 * 17 16 14 28 28 H 1.09003 * 117.49195 * 214.97244 * 20 9 7 29 29 H 1.08994 * 117.50351 * 359.97438 * 20 9 7 30 30 H 1.09003 * 117.50134 * 359.97438 * 21 9 7 31 31 H 1.08996 * 117.49710 * 144.97788 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1942 -0.0005 8 1 3.0771 -1.1984 -0.1269 9 6 1.2613 -2.4933 0.1753 10 6 0.6711 -3.0940 -1.1021 11 8 1.5930 -2.9205 -2.1801 12 6 1.2596 -3.4800 -3.3732 13 6 0.0237 -4.0879 -3.5338 14 6 -0.3135 -4.6563 -4.7494 15 9 -1.5174 -5.2484 -4.9073 16 6 0.5829 -4.6183 -5.8045 17 6 1.8151 -4.0126 -5.6457 18 6 2.1536 -3.4384 -4.4343 19 17 3.6988 -2.6716 -4.2384 20 6 1.7765 -3.4639 1.2400 21 6 0.4784 -2.6889 1.4752 22 1 -0.4849 0.8368 -0.0739 23 1 0.4846 -4.1573 -0.9511 24 1 -0.2660 -2.5910 -1.3408 25 1 -0.6749 -4.1181 -2.7107 26 1 0.3187 -5.0626 -6.7527 27 1 2.5124 -3.9838 -6.4699 28 1 1.6950 -4.5305 1.0302 29 1 2.6535 -3.1632 1.8131 30 1 0.5013 -1.8782 2.2034 31 1 -0.4572 -3.2453 1.4203 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304194809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:12 Heat of formation + Delta-G solvation = -40.806017 kcal Electronic energy + Delta-G solvation = -18137.125112 eV Core-core repulsion = 14939.204481 eV Total energy + Delta-G solvation = -3197.920631 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.88846 -39.75321 -37.42625 -36.03982 -35.84629 -31.95596 -30.47926 -29.76145 -26.74742 -25.33698 -22.64129 -22.29442 -21.21695 -19.29729 -18.24048 -16.92623 -16.44346 -15.90500 -15.71545 -15.48333 -15.01312 -14.51910 -14.20456 -14.01257 -13.57809 -13.01077 -12.76529 -12.61384 -11.83573 -11.52227 -11.41739 -11.12970 -10.95600 -10.89133 -10.60300 -10.51925 -10.49504 -10.15645 -9.68233 -8.94630 -8.75309 -8.47048 -8.23240 -7.87261 -6.06053 -4.09268 1.06782 1.35844 2.45801 3.30841 3.37259 3.41025 3.56880 3.66140 4.26540 4.41331 4.76825 4.99384 5.12039 5.20734 5.22854 5.46188 5.75568 5.78189 5.99229 6.09753 6.11578 6.15347 6.21538 6.42277 6.56240 6.67232 6.75968 6.93581 7.19710 7.35556 7.88774 7.90346 8.38327 8.90754 9.55671 11.03235 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.006633 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.238517 B = 4220.070817 C = 4891.882340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.480 4.480 8 H 0.063 0.937 9 C 0.040 3.960 10 C 0.100 3.900 11 O -0.258 6.258 12 C 0.188 3.812 13 C -0.245 4.245 14 C 0.143 3.857 15 F -0.138 7.138 16 C -0.200 4.200 17 C -0.046 4.046 18 C -0.091 4.091 19 Cl -0.050 7.050 20 C -0.208 4.208 21 C -0.149 4.149 22 H 0.260 0.740 23 H 0.035 0.965 24 H 0.068 0.932 25 H 0.148 0.852 26 H 0.139 0.861 27 H 0.144 0.856 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 -8.429 -9.032 12.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.040 3.960 10 C 0.026 3.974 11 O -0.168 6.168 12 C 0.138 3.862 13 C -0.265 4.265 14 C 0.123 3.877 15 F -0.116 7.116 16 C -0.220 4.220 17 C -0.065 4.065 18 C -0.119 4.119 19 Cl -0.021 7.021 20 C -0.245 4.245 21 C -0.186 4.186 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.086 0.914 25 H 0.166 0.834 26 H 0.157 0.843 27 H 0.161 0.839 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.007 -8.120 -8.847 12.051 hybrid contribution -0.078 0.803 -0.011 0.807 sum 0.929 -7.317 -8.859 11.527 Atomic orbital electron populations 1.69953 1.05904 1.26855 1.49463 1.24948 0.94805 0.98941 0.94381 0.86618 0.79995 0.83389 0.78283 1.20538 1.21248 1.19735 1.20274 0.93408 0.88043 1.50075 0.91855 1.18692 0.98459 0.94604 0.84247 1.22655 0.91912 0.96768 0.86098 1.86444 1.46821 1.68078 1.15478 1.18693 0.90490 0.89561 0.87503 1.21223 0.98582 1.07619 0.99088 1.17433 0.81153 0.94898 0.94196 1.91489 1.42663 1.81347 1.96117 1.20797 0.94523 1.07398 0.99259 1.20640 0.95941 0.94717 0.95166 1.20212 0.90070 1.07127 0.94497 1.98370 1.26135 1.79958 1.97685 1.23117 0.98384 0.95571 1.07452 1.22557 0.92596 1.01248 1.02203 0.92994 0.94682 0.91402 0.83431 0.84318 0.83853 0.91541 0.89982 0.89456 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.50 12.97 55.43 0.72 -23.79 16 2 C 0.07 1.95 5.38 -17.81 -0.10 1.85 16 3 Si 0.89 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.48 -12.91 8.22 -34.44 -0.28 -13.20 16 8 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 9 C 0.04 0.97 1.77 -155.66 -0.28 0.69 16 10 C 0.10 2.17 4.81 37.16 0.18 2.35 16 11 O -0.26 -5.63 8.97 -19.52 -0.18 -5.80 16 12 C 0.19 3.46 6.67 -39.21 -0.26 3.20 16 13 C -0.25 -4.05 9.01 -39.37 -0.35 -4.40 16 14 C 0.14 2.09 7.30 -39.44 -0.29 1.80 16 15 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 16 C -0.20 -2.50 10.02 -39.49 -0.40 -2.90 16 17 C -0.05 -0.59 9.82 -39.58 -0.39 -0.98 16 18 C -0.09 -1.50 6.33 -39.36 -0.25 -1.74 16 19 Cl -0.05 -0.84 28.50 -51.86 -1.48 -2.32 16 20 C -0.21 -4.37 9.88 -26.73 -0.26 -4.63 16 21 C -0.15 -3.31 9.51 -26.73 -0.25 -3.56 16 22 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 23 H 0.04 0.67 7.45 -51.93 -0.39 0.28 16 24 H 0.07 1.54 7.69 -51.93 -0.40 1.15 16 25 H 0.15 2.38 6.32 -52.49 -0.33 2.05 16 26 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 27 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.07 1.24 8.08 -51.93 -0.42 0.82 16 29 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 30 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 31 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 293.54 15.07 4.42 4.42 Total: -1.00 -27.85 293.54 -7.62 -35.47 By element: Atomic # 1 Polarization: 2.46 SS G_CDS: -3.20 Total: -0.74 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -2.93 Total: -21.53 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.72 Total: -23.79 kcal Atomic # 8 Polarization: -5.63 SS G_CDS: -0.18 Total: -5.80 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.48 Total: -2.32 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.85 -7.62 -35.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304194809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.333 kcal (2) G-P(sol) polarization free energy of solvation -27.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds