Wall clock time and date at job start Mon Mar 30 2020 00:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00137 * 2 1 4 4 H 1.48500 * 109.47120 * 269.99865 * 3 2 1 5 5 H 1.48495 * 109.47030 * 30.00348 * 3 2 1 6 6 H 1.48507 * 109.46736 * 150.00116 * 3 2 1 7 7 C 1.37886 * 119.99616 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99553 * 172.23620 * 7 2 1 9 9 C 1.50703 * 119.99783 * 352.23025 * 7 2 1 10 10 C 1.53001 * 115.54923 * 84.99857 * 9 7 2 11 11 O 1.42907 * 109.46750 * 39.68233 * 10 9 7 12 12 C 1.35929 * 116.99475 * 175.71649 * 11 10 9 13 13 C 1.38672 * 120.04569 * 5.18250 * 12 11 10 14 14 C 1.38369 * 119.93301 * 179.97438 * 13 12 11 15 15 F 1.35087 * 119.98969 * 180.02562 * 14 13 12 16 16 C 1.38499 * 120.02089 * 0.02562 * 14 13 12 17 17 C 1.38218 * 120.09780 * 359.97438 * 16 14 13 18 18 C 1.38264 * 120.06323 * 359.74569 * 17 16 14 19 19 Cl 1.73603 * 120.01272 * 180.27751 * 18 17 16 20 20 C 1.53002 * 117.51383 * 230.69743 * 9 7 2 21 21 C 1.52994 * 117.49949 * 299.32717 * 9 7 2 22 22 H 0.96994 * 119.99361 * 5.04642 * 1 2 3 23 23 H 1.09000 * 109.47127 * 159.67970 * 10 9 7 24 24 H 1.08998 * 109.47056 * 279.68660 * 10 9 7 25 25 H 1.07996 * 120.03689 * 359.95545 * 13 12 11 26 26 H 1.07997 * 119.95025 * 179.97438 * 16 14 13 27 27 H 1.08001 * 119.97016 * 180.02562 * 17 16 14 28 28 H 1.09003 * 117.49195 * 214.97244 * 20 9 7 29 29 H 1.08994 * 117.50351 * 359.97438 * 20 9 7 30 30 H 1.09003 * 117.50134 * 359.97438 * 21 9 7 31 31 H 1.08996 * 117.49710 * 144.97788 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0046 -1.1942 -0.0005 8 1 3.0771 -1.1984 -0.1269 9 6 1.2613 -2.4933 0.1753 10 6 0.6711 -3.0940 -1.1021 11 8 1.5930 -2.9205 -2.1801 12 6 1.2596 -3.4800 -3.3732 13 6 0.0237 -4.0879 -3.5338 14 6 -0.3135 -4.6563 -4.7494 15 9 -1.5174 -5.2484 -4.9073 16 6 0.5829 -4.6183 -5.8045 17 6 1.8151 -4.0126 -5.6457 18 6 2.1536 -3.4384 -4.4343 19 17 3.6988 -2.6716 -4.2384 20 6 1.7765 -3.4639 1.2400 21 6 0.4784 -2.6889 1.4752 22 1 -0.4849 0.8368 -0.0739 23 1 0.4846 -4.1573 -0.9511 24 1 -0.2660 -2.5910 -1.3408 25 1 -0.6749 -4.1181 -2.7107 26 1 0.3187 -5.0626 -6.7527 27 1 2.5124 -3.9838 -6.4699 28 1 1.6950 -4.5305 1.0302 29 1 2.6535 -3.1632 1.8131 30 1 0.5013 -1.8782 2.2034 31 1 -0.4572 -3.2453 1.4203 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304194809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:11 Heat of formation + Delta-G solvation = -54.388069 kcal Electronic energy + Delta-G solvation = -18137.714074 eV Core-core repulsion = 14939.204481 eV Total energy + Delta-G solvation = -3198.509593 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.02790 -41.09777 -38.90801 -37.54204 -37.21104 -33.99271 -31.66289 -31.01784 -28.36560 -27.30536 -23.87999 -23.52602 -22.94424 -21.11658 -19.54492 -18.47020 -17.67071 -17.42326 -17.01867 -16.84915 -16.62595 -16.26266 -15.80741 -15.19344 -15.00170 -14.56959 -14.06911 -14.00576 -13.56103 -13.11718 -12.88810 -12.78588 -12.63585 -12.46812 -12.33028 -12.09211 -11.81126 -11.76560 -11.48436 -10.83941 -10.47176 -10.02442 -9.93791 -9.17336 -8.11280 -6.18474 -0.10995 0.18077 1.21738 1.38997 1.40978 1.49704 2.25322 2.39198 2.43798 3.10347 3.17261 3.42752 3.62535 3.89904 3.96007 4.15932 4.29009 4.38361 4.46244 4.60893 4.70741 4.86978 4.92118 4.97676 5.00145 5.05153 5.18142 5.44866 5.58714 5.62895 5.78531 6.30566 6.52584 6.83400 7.47819 8.97013 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.017760 B = 0.006633 C = 0.005722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.238517 B = 4220.070817 C = 4891.882340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 0.940 3.060 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.490 4.490 8 H 0.047 0.953 9 C 0.005 3.995 10 C 0.115 3.885 11 O -0.289 6.289 12 C 0.153 3.847 13 C -0.253 4.253 14 C 0.138 3.862 15 F -0.136 7.136 16 C -0.176 4.176 17 C -0.032 4.032 18 C -0.103 4.103 19 Cl -0.061 7.061 20 C -0.185 4.185 21 C -0.148 4.148 22 H 0.259 0.741 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.142 0.858 26 H 0.180 0.820 27 H 0.181 0.819 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.089 -9.673 -10.793 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.170 4.170 3 Si 0.766 3.234 4 H -0.207 1.207 5 H -0.207 1.207 6 H -0.194 1.194 7 C -0.528 4.528 8 H 0.065 0.935 9 C 0.004 3.996 10 C 0.040 3.960 11 O -0.200 6.200 12 C 0.105 3.895 13 C -0.273 4.273 14 C 0.118 3.882 15 F -0.114 7.114 16 C -0.195 4.195 17 C -0.051 4.051 18 C -0.131 4.131 19 Cl -0.032 7.032 20 C -0.222 4.222 21 C -0.186 4.186 22 H 0.068 0.932 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.160 0.840 26 H 0.197 0.803 27 H 0.199 0.801 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.195 -9.375 -10.614 14.212 hybrid contribution -0.138 1.105 0.423 1.191 sum 1.057 -8.270 -10.191 13.167 Atomic orbital electron populations 1.70037 1.06754 1.27208 1.50570 1.25534 0.95528 1.01460 0.94495 0.85833 0.79112 0.80425 0.78042 1.20684 1.20717 1.19391 1.20455 0.92876 0.89891 1.49614 0.93526 1.18860 0.99972 0.94814 0.85919 1.22330 0.90709 0.97493 0.85453 1.86363 1.47194 1.69803 1.16673 1.18968 0.92028 0.91481 0.87052 1.21224 0.97994 1.08033 1.00087 1.17563 0.81650 0.94815 0.94145 1.91498 1.42643 1.81234 1.96039 1.21253 0.93201 1.05177 0.99887 1.21078 0.96602 0.92768 0.94609 1.20537 0.89520 1.07772 0.95270 1.98362 1.26755 1.80315 1.97814 1.23123 0.97424 0.96593 1.05082 1.22477 0.94075 1.01177 1.00830 0.93172 0.92358 0.93726 0.84007 0.80285 0.80126 0.88677 0.90218 0.91623 0.89916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.33 12.97 21.45 0.28 -51.05 16 2 C 0.03 1.65 5.38 84.66 0.46 2.10 16 3 Si 0.94 44.24 29.55 68.60 2.03 46.26 16 4 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.49 -26.95 8.22 25.60 0.21 -26.74 16 8 H 0.05 2.64 7.83 -2.91 -0.02 2.62 16 9 C 0.00 0.23 1.77 -52.93 -0.09 0.14 16 10 C 0.11 5.05 4.81 71.98 0.35 5.39 16 11 O -0.29 -12.82 8.97 -92.75 -0.83 -13.65 16 12 C 0.15 5.62 6.67 22.51 0.15 5.77 16 13 C -0.25 -8.22 9.01 22.40 0.20 -8.02 16 14 C 0.14 3.70 7.30 22.36 0.16 3.86 16 15 F -0.14 -3.58 17.27 44.97 0.78 -2.80 16 16 C -0.18 -3.68 10.02 22.33 0.22 -3.45 16 17 C -0.03 -0.72 9.82 22.27 0.22 -0.50 16 18 C -0.10 -3.24 6.33 22.41 0.14 -3.10 16 19 Cl -0.06 -2.01 28.50 -2.72 -0.08 -2.08 16 20 C -0.19 -7.62 9.88 30.60 0.30 -7.32 16 21 C -0.15 -6.60 9.51 30.59 0.29 -6.31 16 22 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 23 H 0.06 2.20 7.45 -2.39 -0.02 2.18 16 24 H 0.04 2.11 7.69 -2.39 -0.02 2.09 16 25 H 0.14 4.63 6.32 -2.91 -0.02 4.61 16 26 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 27 H 0.18 2.67 8.06 -2.91 -0.02 2.65 16 28 H 0.09 3.35 8.08 -2.39 -0.02 3.33 16 29 H 0.08 3.28 8.14 -2.39 -0.02 3.26 16 30 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 31 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 Total: -1.00 -60.94 293.54 5.93 -55.00 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.15 Total: 6.49 kcal Atomic # 6 Polarization: -40.78 SS G_CDS: 2.61 Total: -38.17 kcal Atomic # 7 Polarization: -51.33 SS G_CDS: 0.28 Total: -51.05 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.83 Total: -13.65 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.08 Total: -2.08 kcal Total: -60.94 5.93 -55.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304194809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.616 kcal (2) G-P(sol) polarization free energy of solvation -60.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds