Wall clock time and date at job start Mon Mar 30 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48499 * 109.46940 * 271.41649 * 3 2 1 5 5 H 1.48503 * 109.46869 * 31.41367 * 3 2 1 6 6 H 1.48494 * 109.47447 * 151.41320 * 3 2 1 7 7 C 1.37881 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00096 * 358.87900 * 7 2 1 9 9 C 1.50699 * 119.99266 * 178.88164 * 7 2 1 10 10 C 1.52998 * 115.55048 * 92.40536 * 9 7 2 11 11 O 1.42902 * 109.47176 * 320.51062 * 10 9 7 12 12 C 1.35967 * 117.00399 * 184.83830 * 11 10 9 13 13 C 1.38656 * 120.05220 * 354.75554 * 12 11 10 14 14 C 1.38175 * 119.98656 * 180.02562 * 13 12 11 15 15 C 1.38366 * 120.08251 * 359.97438 * 14 13 12 16 16 Cl 1.73595 * 119.94905 * 179.97438 * 15 14 13 17 17 C 1.38350 * 120.09715 * 0.02562 * 15 14 13 18 18 C 1.38338 * 120.02044 * 359.72174 * 17 15 14 19 19 F 1.35093 * 120.04121 * 180.29884 * 18 17 15 20 20 C 1.53001 * 117.49655 * 238.06648 * 9 7 2 21 21 C 1.53006 * 60.03008 * 107.50787 * 20 9 7 22 22 H 0.96992 * 120.00031 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47269 * 80.50728 * 10 9 7 24 24 H 1.08996 * 109.47284 * 200.51464 * 10 9 7 25 25 H 1.08006 * 120.00537 * 0.02562 * 13 12 11 26 26 H 1.08001 * 119.96176 * 180.02562 * 14 13 12 27 27 H 1.08002 * 119.98829 * 179.97438 * 17 15 14 28 28 H 1.08997 * 117.50208 * 215.00438 * 20 9 7 29 29 H 1.08998 * 117.49558 * 0.02562 * 20 9 7 30 30 H 1.09000 * 117.49930 * 107.50290 * 21 20 9 31 31 H 1.09002 * 117.49633 * 252.52657 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4667 2.0636 -1.3997 5 1 1.4619 2.6438 0.7298 6 1 3.5614 1.4318 0.6699 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1293 0.0173 9 6 3.5113 -1.1941 -0.0260 10 6 4.1945 -1.2392 1.3423 11 8 3.4772 -0.4116 2.2603 12 6 4.0114 -0.2592 3.5013 13 6 5.1405 -0.9775 3.8642 14 6 5.6820 -0.8220 5.1259 15 6 5.0991 0.0503 6.0281 16 17 5.7818 0.2425 7.6125 17 6 3.9725 0.7687 5.6696 18 6 3.4300 0.6202 4.4057 19 9 2.3334 1.3260 4.0531 20 6 4.1983 -1.9227 -1.1828 21 6 4.1999 -0.3934 -1.1341 22 1 -0.4850 0.8400 0.0004 23 1 4.2045 -2.2654 1.7098 24 1 5.2181 -0.8764 1.2495 25 1 5.5967 -1.6584 3.1608 26 1 6.5617 -1.3814 5.4080 27 1 3.5187 1.4488 6.3753 28 1 5.1369 -2.4340 -0.9692 29 1 3.5603 -2.4016 -1.9256 30 1 5.1396 0.1013 -0.8883 31 1 3.5627 0.1334 -1.8444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304311225.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:01 Heat of formation + Delta-G solvation = -32.334796 kcal Electronic energy + Delta-G solvation = -18385.307916 eV Core-core repulsion = 15187.754624 eV Total energy + Delta-G solvation = -3197.553292 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.51940 -39.83065 -37.88061 -36.63713 -35.88752 -32.04071 -30.81533 -29.71252 -27.03810 -25.42155 -22.84784 -22.33016 -21.76099 -19.13897 -18.20985 -17.13143 -16.83809 -16.17108 -15.76843 -15.25422 -14.84036 -14.63157 -14.38123 -14.17418 -13.39545 -13.14312 -12.92032 -12.65604 -12.49332 -11.89852 -11.66404 -11.28092 -11.15569 -11.05483 -10.81468 -10.61064 -10.35924 -10.12413 -9.48922 -9.21562 -9.01173 -8.59826 -8.50536 -7.88848 -6.05882 -4.11312 1.04580 1.14052 2.01802 3.27016 3.46257 3.48203 3.56108 3.60656 4.34311 4.53135 4.66028 4.77086 4.88244 5.04003 5.20871 5.42956 5.50819 5.62016 5.72897 5.79449 5.92399 5.97946 6.04979 6.14877 6.18371 6.34078 6.54502 6.59553 6.83512 6.98572 7.63181 7.83761 8.47982 8.93489 9.58435 11.05557 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026578 B = 0.006014 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.238577 B = 4654.454665 C = 5294.162687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.091 3.909 3 Si 0.887 3.113 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.254 1.254 7 C -0.489 4.489 8 H 0.077 0.923 9 C -0.002 4.002 10 C 0.094 3.906 11 O -0.260 6.260 12 C 0.121 3.879 13 C -0.183 4.183 14 C -0.077 4.077 15 C -0.062 4.062 16 Cl -0.072 7.072 17 C -0.109 4.109 18 C 0.074 3.926 19 F -0.121 7.121 20 C -0.169 4.169 21 C -0.202 4.202 22 H 0.265 0.735 23 H 0.060 0.940 24 H 0.044 0.956 25 H 0.146 0.854 26 H 0.138 0.862 27 H 0.148 0.852 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.874 -0.436 10.132 16.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.112 4.112 3 Si 0.717 3.283 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.178 1.178 7 C -0.526 4.526 8 H 0.095 0.905 9 C -0.003 4.003 10 C 0.019 3.981 11 O -0.170 6.170 12 C 0.071 3.929 13 C -0.202 4.202 14 C -0.096 4.096 15 C -0.089 4.089 16 Cl -0.043 7.043 17 C -0.129 4.129 18 C 0.054 3.946 19 F -0.100 7.100 20 C -0.206 4.206 21 C -0.239 4.239 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.062 0.938 25 H 0.164 0.836 26 H 0.156 0.844 27 H 0.166 0.834 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.093 0.907 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.525 -0.205 10.150 16.123 hybrid contribution 0.406 0.973 0.087 1.058 sum 12.931 0.769 10.237 16.511 Atomic orbital electron populations 1.69878 1.06514 1.27230 1.49580 1.24893 0.94454 0.99033 0.92868 0.86722 0.81235 0.83261 0.77126 1.21474 1.22264 1.17776 1.20055 0.85604 0.94587 1.52339 0.90457 1.19318 0.96012 1.00603 0.84392 1.22640 0.92806 0.92450 0.90165 1.86545 1.47826 1.65197 1.17471 1.19433 0.92569 0.93511 0.87375 1.21147 0.97604 1.03423 0.97997 1.20821 0.99762 0.96976 0.92034 1.20290 0.97743 1.02832 0.88054 1.98349 1.84418 1.96972 1.24552 1.20746 0.96032 1.01201 0.94875 1.16792 0.88421 0.96397 0.93002 1.91568 1.50125 1.76193 1.92071 1.22882 1.00837 0.93929 1.02974 1.23097 1.01410 0.94022 1.05365 0.92560 0.92173 0.93763 0.83599 0.84410 0.83446 0.90796 0.88825 0.90735 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 2 C 0.09 2.64 5.42 -17.81 -0.10 2.55 16 3 Si 0.89 22.91 23.66 -169.99 -4.02 18.89 16 4 H -0.29 -7.20 7.04 56.52 0.40 -6.80 16 5 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 6 H -0.25 -6.24 5.80 56.52 0.33 -5.91 16 7 C -0.49 -13.53 8.90 -34.44 -0.31 -13.84 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.00 -0.05 1.37 -155.62 -0.21 -0.26 16 10 C 0.09 1.82 4.65 37.16 0.17 2.00 16 11 O -0.26 -5.68 7.16 -19.64 -0.14 -5.82 16 12 C 0.12 2.19 6.69 -39.18 -0.26 1.93 16 13 C -0.18 -2.57 9.03 -39.45 -0.36 -2.92 16 14 C -0.08 -0.93 9.82 -39.56 -0.39 -1.32 16 15 C -0.06 -0.79 6.32 -39.49 -0.25 -1.04 16 16 Cl -0.07 -0.79 28.95 -51.86 -1.50 -2.29 16 17 C -0.11 -1.54 9.80 -39.50 -0.39 -1.93 16 18 C 0.07 1.32 7.31 -39.30 -0.29 1.03 16 19 F -0.12 -2.50 17.11 2.25 0.04 -2.46 16 20 C -0.17 -3.17 9.95 -26.73 -0.27 -3.44 16 21 C -0.20 -4.14 7.27 -26.69 -0.19 -4.34 16 22 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 23 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 24 H 0.04 0.73 7.42 -51.93 -0.39 0.35 16 25 H 0.15 1.75 6.33 -52.48 -0.33 1.42 16 26 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 30 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 31 H 0.09 2.00 6.63 -51.93 -0.34 1.66 16 LS Contribution 282.26 15.07 4.25 4.25 Total: -1.00 -30.83 282.26 -6.64 -37.47 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -3.21 Total: -1.53 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -2.83 Total: -21.59 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -5.68 SS G_CDS: -0.14 Total: -5.82 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -4.02 Total: 18.89 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.83 -6.64 -37.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304311225.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.136 kcal (2) G-P(sol) polarization free energy of solvation -30.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds