Wall clock time and date at job start Mon Mar 30 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48499 * 109.46940 * 271.41649 * 3 2 1 5 5 H 1.48503 * 109.46869 * 31.41367 * 3 2 1 6 6 H 1.48494 * 109.47447 * 151.41320 * 3 2 1 7 7 C 1.37881 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00096 * 358.87900 * 7 2 1 9 9 C 1.50699 * 119.99266 * 178.88164 * 7 2 1 10 10 C 1.52998 * 115.55048 * 92.40536 * 9 7 2 11 11 O 1.42902 * 109.47176 * 320.51062 * 10 9 7 12 12 C 1.35967 * 117.00399 * 184.83830 * 11 10 9 13 13 C 1.38656 * 120.05220 * 354.75554 * 12 11 10 14 14 C 1.38175 * 119.98656 * 180.02562 * 13 12 11 15 15 C 1.38366 * 120.08251 * 359.97438 * 14 13 12 16 16 Cl 1.73595 * 119.94905 * 179.97438 * 15 14 13 17 17 C 1.38350 * 120.09715 * 0.02562 * 15 14 13 18 18 C 1.38338 * 120.02044 * 359.72174 * 17 15 14 19 19 F 1.35093 * 120.04121 * 180.29884 * 18 17 15 20 20 C 1.53001 * 117.49655 * 238.06648 * 9 7 2 21 21 C 1.53006 * 60.03008 * 107.50787 * 20 9 7 22 22 H 0.96992 * 120.00031 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.47269 * 80.50728 * 10 9 7 24 24 H 1.08996 * 109.47284 * 200.51464 * 10 9 7 25 25 H 1.08006 * 120.00537 * 0.02562 * 13 12 11 26 26 H 1.08001 * 119.96176 * 180.02562 * 14 13 12 27 27 H 1.08002 * 119.98829 * 179.97438 * 17 15 14 28 28 H 1.08997 * 117.50208 * 215.00438 * 20 9 7 29 29 H 1.08998 * 117.49558 * 0.02562 * 20 9 7 30 30 H 1.09000 * 117.49930 * 107.50290 * 21 20 9 31 31 H 1.09002 * 117.49633 * 252.52657 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4667 2.0636 -1.3997 5 1 1.4619 2.6438 0.7298 6 1 3.5614 1.4318 0.6699 7 6 2.0046 -1.1941 -0.0005 8 1 1.4647 -2.1293 0.0173 9 6 3.5113 -1.1941 -0.0260 10 6 4.1945 -1.2392 1.3423 11 8 3.4772 -0.4116 2.2603 12 6 4.0114 -0.2592 3.5013 13 6 5.1405 -0.9775 3.8642 14 6 5.6820 -0.8220 5.1259 15 6 5.0991 0.0503 6.0281 16 17 5.7818 0.2425 7.6125 17 6 3.9725 0.7687 5.6696 18 6 3.4300 0.6202 4.4057 19 9 2.3334 1.3260 4.0531 20 6 4.1983 -1.9227 -1.1828 21 6 4.1999 -0.3934 -1.1341 22 1 -0.4850 0.8400 0.0004 23 1 4.2045 -2.2654 1.7098 24 1 5.2181 -0.8764 1.2495 25 1 5.5967 -1.6584 3.1608 26 1 6.5617 -1.3814 5.4080 27 1 3.5187 1.4488 6.3753 28 1 5.1369 -2.4340 -0.9692 29 1 3.5603 -2.4016 -1.9256 30 1 5.1396 0.1013 -0.8883 31 1 3.5627 0.1334 -1.8444 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304311225.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:01 Heat of formation + Delta-G solvation = -51.208764 kcal Electronic energy + Delta-G solvation = -18386.126352 eV Core-core repulsion = 15187.754624 eV Total energy + Delta-G solvation = -3198.371728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.92560 -41.09332 -39.20098 -37.96777 -37.06471 -34.21462 -31.91210 -30.90491 -28.52474 -27.40229 -24.03608 -23.56163 -23.24975 -20.91194 -19.46013 -18.72035 -18.17567 -17.71774 -17.18958 -16.73186 -16.29743 -16.10033 -15.85068 -15.50647 -14.78164 -14.75443 -14.28014 -14.15965 -13.92446 -13.22696 -13.16868 -12.88657 -12.66184 -12.46144 -12.10745 -12.01926 -11.95270 -11.61047 -11.45345 -10.99348 -10.68330 -10.23857 -10.11148 -9.12247 -8.29564 -6.35121 -0.05042 0.00772 1.01852 1.26586 1.39735 1.51092 2.20379 2.35743 2.40136 3.10186 3.14702 3.22687 3.60281 3.85023 3.95822 4.08372 4.23637 4.29819 4.37567 4.42976 4.53864 4.70336 4.85423 4.88410 4.99874 5.01207 5.04652 5.21449 5.44156 5.49550 5.69555 6.25238 6.44555 6.75276 7.37469 8.86235 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.026578 B = 0.006014 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.238577 B = 4654.454665 C = 5294.162687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.035 3.965 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.316 1.316 6 H -0.230 1.230 7 C -0.479 4.479 8 H 0.032 0.968 9 C -0.041 4.041 10 C 0.097 3.903 11 O -0.307 6.307 12 C 0.089 3.911 13 C -0.171 4.171 14 C -0.061 4.061 15 C -0.058 4.058 16 Cl -0.050 7.050 17 C -0.103 4.103 18 C 0.034 3.966 19 F -0.151 7.151 20 C -0.140 4.140 21 C -0.202 4.202 22 H 0.261 0.739 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.172 0.828 26 H 0.177 0.823 27 H 0.162 0.838 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.241 -1.055 11.312 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.202 1.202 5 H -0.245 1.245 6 H -0.153 1.153 7 C -0.516 4.516 8 H 0.051 0.949 9 C -0.042 4.042 10 C 0.023 3.977 11 O -0.220 6.220 12 C 0.041 3.959 13 C -0.189 4.189 14 C -0.079 4.079 15 C -0.085 4.085 16 Cl -0.021 7.021 17 C -0.122 4.122 18 C 0.014 3.986 19 F -0.130 7.130 20 C -0.177 4.177 21 C -0.239 4.239 22 H 0.070 0.930 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.190 0.810 26 H 0.195 0.805 27 H 0.180 0.820 28 H 0.140 0.860 29 H 0.100 0.900 30 H 0.125 0.875 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.940 -0.843 11.334 20.399 hybrid contribution -0.899 1.039 -0.146 1.381 sum 16.041 0.196 11.187 19.558 Atomic orbital electron populations 1.70028 1.08375 1.27633 1.53121 1.25642 0.94896 1.02385 0.93294 0.85873 0.80817 0.79079 0.77395 1.20247 1.24476 1.15320 1.20316 0.89195 0.92357 1.49743 0.94926 1.19358 0.93035 1.04435 0.87406 1.22622 0.93705 0.93569 0.87813 1.86452 1.49794 1.66426 1.19324 1.19747 0.94446 0.95242 0.86447 1.21426 0.95859 1.02493 0.99146 1.21253 1.00065 0.95861 0.90747 1.20473 0.96941 1.01986 0.89135 1.98367 1.83870 1.96856 1.22968 1.20898 0.96277 1.01320 0.93707 1.17311 0.88718 0.97779 0.94780 1.91480 1.51870 1.77132 1.92536 1.22948 1.01800 0.93105 0.99882 1.23136 1.01912 0.95369 1.03516 0.93007 0.90522 0.90106 0.81043 0.80543 0.82013 0.86038 0.89953 0.87495 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.29 13.96 21.45 0.30 -61.99 16 2 C 0.04 2.14 5.42 84.65 0.46 2.59 16 3 Si 0.94 48.60 23.66 68.60 1.62 50.23 16 4 H -0.28 -13.49 7.04 99.48 0.70 -12.79 16 5 H -0.32 -17.20 7.11 99.48 0.71 -16.49 16 6 H -0.23 -10.92 5.80 99.48 0.58 -10.34 16 7 C -0.48 -27.32 8.90 25.60 0.23 -27.10 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C -0.04 -1.79 1.37 -52.90 -0.07 -1.86 16 10 C 0.10 3.48 4.65 71.98 0.33 3.81 16 11 O -0.31 -13.22 7.16 -93.18 -0.67 -13.89 16 12 C 0.09 3.12 6.69 22.53 0.15 3.27 16 13 C -0.17 -4.15 9.03 22.35 0.20 -3.95 16 14 C -0.06 -1.19 9.82 22.29 0.22 -0.97 16 15 C -0.06 -1.29 6.32 22.33 0.14 -1.15 16 16 Cl -0.05 -0.91 28.95 -2.72 -0.08 -0.99 16 17 C -0.10 -2.75 9.80 22.32 0.22 -2.53 16 18 C 0.03 1.21 7.31 22.45 0.16 1.38 16 19 F -0.15 -6.55 17.11 44.97 0.77 -5.78 16 20 C -0.14 -4.81 9.95 30.60 0.30 -4.50 16 21 C -0.20 -7.71 7.27 30.62 0.22 -7.49 16 22 H 0.26 16.32 8.31 -92.71 -0.77 15.55 16 23 H 0.08 2.40 7.72 -2.39 -0.02 2.38 16 24 H 0.08 2.26 7.42 -2.39 -0.02 2.25 16 25 H 0.17 3.21 6.33 -2.91 -0.02 3.19 16 26 H 0.18 2.13 8.06 -2.91 -0.02 2.10 16 27 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.11 3.38 8.08 -2.39 -0.02 3.37 16 31 H 0.07 2.88 6.63 -2.39 -0.02 2.87 16 Total: -1.00 -72.61 282.26 5.53 -67.08 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.02 Total: 3.82 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 2.57 Total: -38.48 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: 0.30 Total: -61.99 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.67 Total: -13.89 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.77 Total: -5.78 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 1.62 Total: 50.23 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -72.61 5.53 -67.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304311225.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.868 kcal (2) G-P(sol) polarization free energy of solvation -72.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds