Wall clock time and date at job start Mon Mar 30 2020 00:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99736 * 2 1 4 4 H 1.48493 * 109.47657 * 240.00486 * 3 2 1 5 5 H 1.48508 * 109.47246 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47049 * 120.00194 * 3 2 1 7 7 C 1.37879 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99730 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00333 * 359.97438 * 7 2 1 10 10 C 1.52991 * 109.47410 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47581 * 179.97438 * 10 9 7 12 12 C 1.34736 * 117.00183 * 179.97438 * 11 10 9 13 13 O 1.21474 * 119.99903 * 0.02562 * 12 11 10 14 14 C 1.47704 * 119.99609 * 179.97438 * 12 11 10 15 15 C 1.39539 * 119.63140 * 180.22829 * 14 12 11 16 16 C 1.38261 * 119.18046 * 180.27640 * 15 14 12 17 17 C 1.39381 * 118.45023 * 359.50432 * 16 15 14 18 18 N 1.39080 * 120.39960 * 180.27384 * 17 16 15 19 19 C 1.39650 * 119.19668 * 0.25820 * 17 16 15 20 20 Cl 1.73595 * 119.62602 * 179.97438 * 19 17 16 21 21 N 1.31372 * 120.75213 * 359.97438 * 19 17 16 22 22 H 0.96997 * 120.00570 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47094 * 59.99924 * 9 7 2 24 24 H 1.09000 * 109.47232 * 300.00572 * 9 7 2 25 25 H 1.09001 * 109.47351 * 59.99718 * 10 9 7 26 26 H 1.09000 * 109.47093 * 300.00293 * 10 9 7 27 27 H 1.07996 * 120.40645 * 0.03807 * 15 14 12 28 28 H 1.08002 * 120.77680 * 179.78711 * 16 15 14 29 29 H 0.96998 * 120.00374 * 0.02562 * 18 17 16 30 30 H 0.97002 * 119.99827 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5195 -4.9195 0.0001 12 6 2.2534 -6.0494 -0.0004 13 8 3.4665 -5.9858 -0.0008 14 6 1.5828 -7.3655 0.0008 15 6 2.3503 -8.5309 0.0051 16 6 1.7129 -9.7578 0.0003 17 6 0.3193 -9.7821 0.0019 18 7 -0.3634 -10.9938 0.0030 19 6 -0.3831 -8.5751 0.0027 20 17 -2.1189 -8.5924 0.0040 21 7 0.2549 -7.4267 0.0025 22 1 -0.4851 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8896 25 1 2.8721 -3.6043 0.8894 26 1 2.8721 -3.6042 -0.8905 27 1 3.4288 -8.4751 0.0083 28 1 2.2816 -10.6760 0.0001 29 1 0.1303 -11.8287 0.0030 30 1 -1.3334 -11.0040 0.0037 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309535740.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:14 Heat of formation + Delta-G solvation = -88.608181 kcal Electronic energy + Delta-G solvation = -17273.385929 eV Core-core repulsion = 14093.312402 eV Total energy + Delta-G solvation = -3180.073527 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89819 -40.77679 -37.85282 -37.56693 -36.49312 -35.43409 -33.16309 -32.39687 -30.63041 -27.23617 -25.55949 -24.73257 -23.09682 -22.27817 -19.70410 -18.70613 -18.56796 -18.14161 -17.68012 -17.57529 -16.73206 -16.45354 -15.91551 -15.88887 -14.95694 -14.77167 -14.40646 -14.30688 -13.80849 -13.18653 -13.01950 -12.84762 -12.64524 -12.60551 -12.51030 -12.40598 -12.05935 -11.63469 -11.46638 -11.45056 -10.83461 -10.72737 -10.60377 -8.93190 -8.25509 -6.39951 -0.51004 0.00365 0.70556 1.30613 1.40978 1.46179 1.53454 1.67319 2.40569 2.52504 2.58158 3.08208 3.15544 3.47349 3.86682 3.92254 4.11802 4.22581 4.24221 4.63042 4.68236 4.84735 5.17378 5.24599 5.45665 5.48636 5.73161 6.01255 6.06110 6.36322 6.65760 6.73026 6.79125 7.29767 8.87292 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.030988 B = 0.003664 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.361403 B = 7639.608030 C = 8522.523479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.978 3.022 4 H -0.264 1.264 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.551 4.551 8 H 0.069 0.931 9 C 0.032 3.968 10 C 0.088 3.912 11 O -0.353 6.353 12 C 0.517 3.483 13 O -0.529 6.529 14 C 0.009 3.991 15 C -0.036 4.036 16 C -0.145 4.145 17 C 0.238 3.762 18 N -0.824 5.824 19 C 0.074 3.926 20 Cl -0.028 7.028 21 N -0.422 5.422 22 H 0.268 0.732 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.172 0.828 28 H 0.205 0.795 29 H 0.427 0.573 30 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.539 -27.707 0.010 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.801 3.199 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.589 4.589 8 H 0.087 0.913 9 C -0.006 4.006 10 C 0.015 3.985 11 O -0.268 6.268 12 C 0.363 3.637 13 O -0.420 6.420 14 C -0.128 4.128 15 C -0.057 4.057 16 C -0.175 4.175 17 C 0.122 3.878 18 N -0.362 5.362 19 C -0.102 4.102 20 Cl 0.000 7.000 21 N -0.135 5.135 22 H 0.077 0.923 23 H 0.021 0.979 24 H 0.020 0.980 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.190 0.810 28 H 0.221 0.779 29 H 0.261 0.739 30 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.131 -26.754 0.012 26.755 hybrid contribution 0.054 0.372 0.002 0.376 sum 0.185 -26.382 0.014 26.383 Atomic orbital electron populations 1.70117 1.08003 1.28368 1.50296 1.26045 0.95861 1.03643 0.93982 0.85309 0.78106 0.77045 0.79421 1.18865 1.20500 1.18876 1.21353 0.93798 0.91025 1.52676 0.91321 1.18961 0.94351 0.90864 0.96383 1.23242 0.95086 0.78872 1.01279 1.86701 1.41951 1.15590 1.82577 1.21187 0.85167 0.85200 0.72172 1.90773 1.14859 1.88224 1.48125 1.19513 0.88090 0.91112 1.14102 1.22128 1.02813 0.89918 0.90816 1.21439 0.90440 0.99740 1.05834 1.18580 0.92592 0.86480 0.90164 1.42526 1.10653 1.04164 1.78860 1.21293 0.87931 0.88757 1.12241 1.98384 1.06455 1.98090 1.97090 1.66522 1.10504 1.29596 1.06864 0.92340 0.97938 0.97952 0.91772 0.91760 0.81008 0.77856 0.73943 0.75565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.99 13.29 21.45 0.28 -57.71 16 2 C 0.00 0.20 5.46 84.65 0.46 0.67 16 3 Si 0.98 44.91 29.54 68.60 2.03 46.94 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -32.62 9.11 25.60 0.23 -32.39 16 8 H 0.07 3.84 7.74 -2.91 -0.02 3.81 16 9 C 0.03 1.83 5.35 29.84 0.16 1.99 16 10 C 0.09 4.33 5.41 71.98 0.39 4.71 16 11 O -0.35 -16.56 10.03 -56.46 -0.57 -17.12 16 12 C 0.52 20.69 7.94 70.32 0.56 21.25 16 13 O -0.53 -21.67 16.10 19.92 0.32 -21.35 16 14 C 0.01 0.28 6.74 41.79 0.28 0.57 16 15 C -0.04 -0.73 9.62 22.59 0.22 -0.51 16 16 C -0.14 -1.76 10.02 22.55 0.23 -1.54 16 17 C 0.24 3.53 6.79 38.61 0.26 3.79 16 18 N -0.82 -4.95 9.02 -50.99 -0.46 -5.41 16 19 C 0.07 1.80 7.30 85.10 0.62 2.42 16 20 Cl -0.03 -0.63 27.76 -2.72 -0.08 -0.70 16 21 N -0.42 -14.01 10.08 -175.41 -1.77 -15.77 16 22 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 23 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 24 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 25 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 26 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 27 H 0.17 2.97 7.63 -2.91 -0.02 2.94 16 28 H 0.20 0.39 8.06 -2.91 -0.02 0.36 16 29 H 0.43 -0.43 8.85 -92.71 -0.82 -1.25 16 30 H 0.41 2.37 7.51 -92.71 -0.70 1.68 16 Total: -1.00 -77.92 291.51 2.86 -75.05 By element: Atomic # 1 Polarization: -4.58 SS G_CDS: -0.31 Total: -4.89 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 3.41 Total: 0.96 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -1.94 Total: -78.89 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.25 Total: -38.47 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.70 kcal Total: -77.92 2.86 -75.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309535740.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.554 kcal (2) G-P(sol) polarization free energy of solvation -77.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds