Wall clock time and date at job start Mon Mar 30 2020 00:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 120.00196 * 2 1 4 4 H 1.48501 * 109.46832 * 269.99911 * 3 2 1 5 5 H 1.48498 * 109.46871 * 29.99808 * 3 2 1 6 6 H 1.48495 * 109.47101 * 150.00091 * 3 2 1 7 7 C 1.37873 * 119.99694 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00157 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00356 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47540 * 179.97438 * 9 7 2 11 11 O 1.45202 * 109.47565 * 179.97438 * 10 9 7 12 12 C 1.34668 * 117.00084 * 180.02562 * 11 10 9 13 13 O 1.21420 * 120.00298 * 0.02562 * 12 11 10 14 14 C 1.48076 * 119.99746 * 180.02562 * 12 11 10 15 15 C 1.39618 * 120.87653 * 180.25030 * 14 12 11 16 16 C 1.39044 * 118.95297 * 180.27292 * 15 14 12 17 17 N 1.39033 * 119.62941 * 179.71783 * 16 15 14 18 18 N 1.32366 * 120.73711 * 359.74199 * 16 15 14 19 19 C 1.31963 * 121.94119 * 359.97438 * 18 16 15 20 20 Cl 1.73595 * 119.51657 * 179.97438 * 19 18 16 21 21 C 1.38183 * 120.97116 * 0.02562 * 19 18 16 22 22 H 0.97005 * 119.99480 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47092 * 59.99999 * 9 7 2 24 24 H 1.08999 * 109.47405 * 300.00432 * 9 7 2 25 25 H 1.09000 * 109.46843 * 60.00448 * 10 9 7 26 26 H 1.09002 * 109.47737 * 300.00611 * 10 9 7 27 27 H 1.07997 * 120.52045 * 359.97438 * 15 14 12 28 28 H 0.96994 * 119.99763 * 180.02562 * 17 16 15 29 29 H 0.97003 * 119.99970 * 0.02931 * 17 16 15 30 30 H 1.08002 * 120.42121 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 8 1.5191 -4.9196 -0.0012 12 6 2.2526 -6.0490 -0.0017 13 8 3.4651 -5.9855 -0.0021 14 6 1.5803 -7.3683 -0.0017 15 6 2.3226 -8.5508 0.0031 16 6 1.6501 -9.7678 -0.0029 17 7 2.3754 -10.9539 -0.0042 18 7 0.3271 -9.8096 -0.0078 19 6 -0.4061 -8.7124 -0.0068 20 17 -2.1373 -8.8406 -0.0142 21 6 0.1839 -7.4629 -0.0010 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5567 -0.8903 24 1 0.6246 -2.5571 0.8896 25 1 2.8724 -3.6048 0.8878 26 1 2.8712 -3.6040 -0.8922 27 1 3.4022 -8.5206 0.0064 28 1 1.9118 -11.8058 -0.0087 29 1 3.3452 -10.9294 -0.0005 30 1 -0.4248 -6.5707 -0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309605417.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:11 Heat of formation + Delta-G solvation = -82.979983 kcal Electronic energy + Delta-G solvation = -17225.624644 eV Core-core repulsion = 14045.795173 eV Total energy + Delta-G solvation = -3179.829470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.97479 -40.88997 -37.91912 -37.74120 -35.81615 -35.41932 -33.89180 -32.27184 -30.36428 -27.57217 -25.98768 -24.42380 -23.09956 -22.19222 -19.70282 -18.77655 -18.55363 -17.79661 -17.63534 -17.34112 -16.73045 -16.43967 -15.99464 -15.91550 -15.70891 -15.04870 -14.54123 -14.35540 -13.39504 -13.29641 -13.18821 -13.02722 -12.62805 -12.59561 -12.39398 -12.08354 -11.78906 -11.63546 -11.50712 -11.41988 -10.96526 -10.95299 -10.59629 -9.04385 -8.25548 -6.38590 -0.69673 -0.09136 0.60022 1.34866 1.39895 1.44473 1.47832 1.57003 2.40058 2.44090 2.52613 3.09299 3.30627 3.61044 3.76593 3.95030 4.13136 4.22894 4.23837 4.34621 4.69208 4.89257 5.05305 5.18133 5.45566 5.48140 5.73923 6.06201 6.07262 6.24673 6.51835 6.75223 7.02423 7.31222 8.86943 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.027523 B = 0.003659 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.095500 B = 7650.786149 C = 8647.430576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.067 0.933 9 C 0.029 3.971 10 C 0.090 3.910 11 O -0.353 6.353 12 C 0.507 3.493 13 O -0.519 6.519 14 C -0.028 4.028 15 C -0.166 4.166 16 C 0.422 3.578 17 N -0.822 5.822 18 N -0.535 5.535 19 C 0.215 3.785 20 Cl -0.015 7.015 21 C -0.170 4.170 22 H 0.267 0.733 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.169 0.831 28 H 0.417 0.583 29 H 0.427 0.573 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.433 -21.912 -0.009 22.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.587 4.587 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.017 3.983 11 O -0.268 6.268 12 C 0.351 3.649 13 O -0.410 6.410 14 C -0.037 4.037 15 C -0.191 4.191 16 C 0.182 3.818 17 N -0.369 5.369 18 N -0.257 5.257 19 C 0.051 3.949 20 Cl 0.014 6.986 21 C -0.194 4.194 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.187 0.813 28 H 0.248 0.752 29 H 0.261 0.739 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 2.089 -22.528 -0.010 22.625 hybrid contribution 0.557 1.499 -0.006 1.599 sum 2.646 -21.029 -0.015 21.195 Atomic orbital electron populations 1.70098 1.07802 1.28240 1.50387 1.25947 0.95815 1.03366 0.94128 0.85334 0.78571 0.77842 0.78629 1.19605 1.20561 1.18645 1.21370 0.93772 0.91133 1.52454 0.91513 1.19000 0.94397 0.90472 0.96922 1.23306 0.95154 0.78223 1.01582 1.86561 1.42009 1.15578 1.82693 1.21292 0.85397 0.85529 0.72642 1.90787 1.15472 1.88396 1.46304 1.19075 0.93240 0.90147 1.01225 1.21673 1.02695 0.89370 1.05371 1.17924 0.86229 0.87716 0.89937 1.42169 1.09571 1.04031 1.81080 1.66252 1.06273 1.32241 1.20920 1.21058 0.87839 0.88512 0.97455 1.98422 1.05542 1.98410 1.96241 1.21858 0.94031 0.98456 1.05031 0.92374 0.97340 0.97325 0.91590 0.91557 0.81341 0.75154 0.73902 0.82493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.97 13.29 21.45 0.28 -54.68 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 6 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 7 C -0.55 -30.61 9.11 25.60 0.23 -30.37 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 9 C 0.03 1.54 5.35 29.85 0.16 1.70 16 10 C 0.09 3.92 5.41 71.98 0.39 4.31 16 11 O -0.35 -13.81 9.57 -55.77 -0.53 -14.34 16 12 C 0.51 17.36 7.92 70.43 0.56 17.92 16 13 O -0.52 -19.30 16.23 20.09 0.33 -18.97 16 14 C -0.03 -0.76 5.90 -19.92 -0.12 -0.88 16 15 C -0.17 -3.53 9.51 22.80 0.22 -3.31 16 16 C 0.42 7.95 7.74 133.04 1.03 8.98 16 17 N -0.82 -8.18 9.07 -55.49 -0.50 -8.68 16 18 N -0.53 -12.14 10.34 -184.27 -1.91 -14.04 16 19 C 0.22 5.26 7.26 84.66 0.62 5.87 16 20 Cl -0.01 -0.33 29.10 -2.72 -0.08 -0.41 16 21 C -0.17 -4.47 9.46 22.67 0.21 -4.25 16 22 H 0.27 14.83 8.31 -92.70 -0.77 14.06 16 23 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 24 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.17 3.01 7.74 -2.91 -0.02 2.99 16 28 H 0.42 3.11 8.95 -92.71 -0.83 2.28 16 29 H 0.43 1.97 8.82 -92.71 -0.82 1.15 16 30 H 0.16 4.22 7.71 -2.91 -0.02 4.19 16 Total: -1.00 -66.20 293.41 2.93 -63.27 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: -0.44 Total: 1.95 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: 3.76 Total: 0.79 kcal Atomic # 7 Polarization: -75.28 SS G_CDS: -2.12 Total: -77.41 kcal Atomic # 8 Polarization: -33.10 SS G_CDS: -0.21 Total: -33.31 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.41 kcal Total: -66.20 2.93 -63.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309605417.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.712 kcal (2) G-P(sol) polarization free energy of solvation -66.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds