Wall clock time and date at job start Mon Mar 30 2020 00:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38151 * 120.03433 * 2 1 4 4 C 1.38253 * 120.09750 * 179.79011 * 3 2 1 5 5 N 1.48004 * 119.92398 * 180.22949 * 4 3 2 6 6 O 1.21803 * 119.99725 * 180.23136 * 5 4 3 7 7 O 1.21798 * 119.99950 * 0.23424 * 5 4 3 8 8 C 1.38319 * 120.15174 * 0.46333 * 4 3 2 9 9 C 1.38169 * 120.06020 * 359.78932 * 8 4 3 10 10 Cl 1.73602 * 120.04512 * 180.02562 * 9 8 4 11 11 C 1.38838 * 120.02665 * 180.27068 * 2 1 3 12 12 N 1.39746 * 120.08198 * 0.02562 * 11 2 1 13 13 C 1.46905 * 110.99714 * 266.06362 * 12 11 2 14 14 C 1.50706 * 109.47185 * 175.29353 * 13 12 11 15 15 H 1.08001 * 119.99695 * 0.02562 * 14 13 12 16 16 C 1.37875 * 119.99853 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99988 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99563 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47619 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47373 * 120.00197 * 18 16 14 21 21 H 1.48501 * 109.47146 * 239.99553 * 18 16 14 22 22 H 1.09005 * 109.47167 * 269.72585 * 1 2 3 23 23 H 1.09000 * 109.47428 * 149.72560 * 1 2 3 24 24 H 1.09001 * 109.46919 * 29.72469 * 1 2 3 25 25 H 1.08001 * 119.95288 * 0.02562 * 3 2 1 26 26 H 1.08002 * 119.96728 * 179.76761 * 8 4 3 27 27 H 1.00900 * 111.00613 * 142.10812 * 12 11 2 28 28 H 1.08996 * 109.46877 * 295.29075 * 13 12 11 29 29 H 1.08996 * 109.47082 * 55.29435 * 13 12 11 30 30 H 0.97008 * 119.99624 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1960 0.0000 4 6 3.5810 1.1975 0.0044 5 7 4.3179 2.4811 0.0095 6 8 5.5359 2.4840 0.0091 7 8 3.7063 3.5344 0.0142 8 6 4.2771 0.0023 -0.0009 9 6 3.5921 -1.1976 -0.0062 10 17 4.4661 -2.6975 -0.0121 11 6 2.2018 -1.2020 -0.0057 12 7 1.5053 -2.4136 -0.0119 13 6 1.3241 -2.9236 1.3537 14 6 0.4724 -4.1664 1.3170 15 1 0.1031 -4.5402 0.3734 16 6 0.1656 -4.8268 2.4878 17 7 0.6166 -4.3724 3.6365 18 14 -0.8894 -6.3676 2.4420 19 1 -1.2653 -6.6687 1.0373 20 1 -0.1236 -7.5089 3.0044 21 1 -2.1176 -6.1507 3.2480 22 1 -0.3634 -0.0049 1.0277 23 1 -0.3634 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5096 25 1 1.6583 2.1312 0.0004 26 1 5.3571 0.0070 -0.0012 27 1 1.9698 -3.0947 -0.5937 28 1 2.2965 -3.1622 1.7845 29 1 0.8332 -2.1647 1.9629 30 1 0.4004 -4.8369 4.4603 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309703611.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:02 Heat of formation + Delta-G solvation = -5.373804 kcal Electronic energy + Delta-G solvation = -17953.051079 eV Core-core repulsion = 14776.586865 eV Total energy + Delta-G solvation = -3176.464214 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.33664 -41.18399 -37.88443 -37.71597 -37.18486 -34.77331 -33.85720 -31.79192 -29.04733 -28.27526 -26.58035 -24.25136 -23.69238 -22.52263 -20.09051 -19.85026 -18.98421 -18.69112 -17.83430 -17.29487 -16.77051 -16.37693 -15.73490 -15.05132 -14.74786 -14.43407 -14.35310 -13.98306 -13.59715 -13.09973 -12.92217 -12.80060 -12.74254 -12.71683 -12.68358 -12.41923 -12.33722 -12.17327 -12.14571 -11.48753 -10.75787 -10.46060 -10.15049 -9.50964 -8.25768 -6.36279 -1.33941 -0.35486 0.14828 0.15380 0.82110 1.41914 1.44203 1.56055 1.94855 2.38483 3.01879 3.10220 3.21309 3.44294 3.56812 3.78199 4.20517 4.23740 4.39346 4.58785 4.78176 4.82043 5.00660 5.08202 5.11210 5.21151 5.44198 5.58159 5.90912 6.08667 6.43340 6.46511 6.78111 7.34270 8.85424 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.027854 B = 0.005013 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.993038 B = 5584.165764 C = 6132.637833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.066 4.066 3 C -0.031 4.031 4 C -0.060 4.060 5 N 0.038 4.962 6 O -0.184 6.184 7 O -0.159 6.159 8 C -0.039 4.039 9 C -0.090 4.090 10 Cl -0.037 7.037 11 C 0.164 3.836 12 N -0.638 5.638 13 C 0.221 3.779 14 C -0.531 4.531 15 H 0.070 0.930 16 C 0.010 3.990 17 N -0.930 5.930 18 Si 0.968 3.032 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.280 1.280 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.100 0.900 25 H 0.184 0.816 26 H 0.170 0.830 27 H 0.356 0.644 28 H -0.015 1.015 29 H 0.011 0.989 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 8.264 -8.260 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.069 4.069 3 C -0.051 4.051 4 C -0.144 4.144 5 N 0.555 4.445 6 O -0.395 6.395 7 O -0.376 6.376 8 C -0.060 4.060 9 C -0.120 4.120 10 Cl -0.008 7.008 11 C 0.064 3.936 12 N -0.266 5.266 13 C 0.097 3.903 14 C -0.569 4.569 15 H 0.088 0.912 16 C -0.189 4.189 17 N -0.570 5.570 18 Si 0.793 3.207 19 H -0.185 1.185 20 H -0.208 1.208 21 H -0.206 1.206 22 H 0.089 0.911 23 H 0.098 0.902 24 H 0.119 0.881 25 H 0.201 0.799 26 H 0.187 0.813 27 H 0.178 0.822 28 H 0.002 0.998 29 H 0.029 0.971 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.267 7.695 -8.094 11.396 hybrid contribution 0.993 -1.011 0.557 1.523 sum 3.260 6.683 -7.537 10.588 Atomic orbital electron populations 1.20745 0.87003 1.04814 1.03321 1.19925 0.98736 0.88908 0.99291 1.21139 0.90241 1.00768 0.92918 1.20830 0.92722 0.82715 1.18093 1.43569 1.01098 1.02880 0.96991 1.94535 0.95878 1.94350 1.54698 1.94507 1.69785 1.20121 1.53223 1.20701 1.02532 0.88083 0.94666 1.21569 0.92752 0.88516 1.09203 1.98406 1.75225 1.30325 1.96839 1.19425 0.88473 0.94218 0.91490 1.58096 1.50044 1.03614 1.14814 1.19297 0.94946 0.94275 0.81733 1.21438 1.31961 1.09726 0.93810 0.91220 1.25803 0.97315 1.00948 0.94875 1.70073 1.46539 1.41741 0.98648 0.85355 0.78164 0.78583 0.78645 1.18479 1.20832 1.20573 0.91112 0.90247 0.88119 0.79869 0.81283 0.82212 0.99753 0.97058 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.50 9.77 71.24 0.70 -1.80 16 2 C -0.07 -1.80 5.90 -19.74 -0.12 -1.92 16 3 C -0.03 -0.75 9.20 22.25 0.20 -0.54 16 4 C -0.06 -1.59 6.85 36.40 0.25 -1.34 16 5 N 0.04 1.07 4.45 -46.42 -0.21 0.87 16 6 O -0.18 -5.48 18.44 18.88 0.35 -5.14 16 7 O -0.16 -4.48 18.44 18.89 0.35 -4.13 16 8 C -0.04 -1.06 9.33 22.27 0.21 -0.85 16 9 C -0.09 -2.70 6.33 22.44 0.14 -2.56 16 10 Cl -0.04 -1.12 27.24 -2.72 -0.07 -1.19 16 11 C 0.16 5.27 5.24 38.21 0.20 5.47 16 12 N -0.64 -23.65 5.15 -342.14 -1.76 -25.41 16 13 C 0.22 10.41 5.31 85.56 0.45 10.86 16 14 C -0.53 -27.25 9.36 25.60 0.24 -27.01 16 15 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 16 C 0.01 0.51 5.46 84.65 0.46 0.97 16 17 N -0.93 -52.54 13.29 21.45 0.28 -52.26 16 18 Si 0.97 41.41 29.54 68.60 2.03 43.43 16 19 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 22 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 23 H 0.08 2.20 7.46 -2.39 -0.02 2.19 16 24 H 0.10 1.71 8.08 -2.39 -0.02 1.69 16 25 H 0.18 3.36 7.60 -2.91 -0.02 3.34 16 26 H 0.17 4.04 7.60 -2.91 -0.02 4.02 16 27 H 0.36 12.74 7.69 -89.69 -0.69 12.05 16 28 H -0.02 -0.78 7.71 -2.39 -0.02 -0.80 16 29 H 0.01 0.58 8.12 -2.39 -0.02 0.56 16 30 H 0.27 14.18 8.31 -92.70 -0.77 13.41 16 Total: -1.00 -57.30 289.16 4.20 -53.09 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.50 Total: 9.45 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: 2.74 Total: -18.72 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -1.68 Total: -76.80 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.70 Total: -9.27 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.07 Total: -1.19 kcal Total: -57.30 4.20 -53.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309703611.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.721 kcal (2) G-P(sol) polarization free energy of solvation -57.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds