Wall clock time and date at job start Mon Mar 30 2020 01:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30838 * 1 3 3 Si 1.86801 * 119.99748 * 2 1 4 4 H 1.48493 * 109.47220 * 270.00343 * 3 2 1 5 5 H 1.48499 * 109.46952 * 30.00493 * 3 2 1 6 6 H 1.48501 * 109.46840 * 150.00227 * 3 2 1 7 7 C 1.39926 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99754 * 168.39838 * 7 2 1 9 9 C 1.41408 * 120.00268 * 348.40080 * 7 2 1 10 10 C 1.40792 * 120.20689 * 152.28932 * 9 7 2 11 11 C 1.37641 * 119.89082 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32891 * 0.02562 * 11 10 9 13 13 C 1.39292 * 120.42256 * 0.02562 * 12 11 10 14 14 N 1.39687 * 119.95586 * 180.02562 * 13 12 11 15 15 S 1.65603 * 119.99913 * 284.66050 * 14 13 12 16 16 O 1.42095 * 104.27717 * 48.87062 * 15 14 13 17 17 O 1.42102 * 104.27913 * 176.73383 * 15 14 13 18 18 C 1.81404 * 104.44697 * 292.79915 * 15 14 13 19 19 C 1.52998 * 109.46991 * 176.29513 * 18 15 14 20 20 N 1.46902 * 109.46803 * 180.02562 * 19 18 15 21 21 C 1.38316 * 120.09986 * 0.02562 * 13 12 11 22 22 H 0.97001 * 120.00119 * 359.97438 * 1 2 3 23 23 H 1.07992 * 120.05071 * 0.02562 * 10 9 7 24 24 H 1.08004 * 119.83625 * 180.02562 * 11 10 9 25 25 H 1.07998 * 119.79266 * 180.02562 * 12 11 10 26 26 H 0.96996 * 120.00122 * 104.64925 * 14 13 12 27 27 H 1.08995 * 109.47097 * 296.29813 * 18 15 14 28 28 H 1.09001 * 109.46646 * 56.29796 * 18 15 14 29 29 H 1.08996 * 109.47132 * 299.99642 * 19 18 15 30 30 H 1.08998 * 109.47602 * 60.00303 * 19 18 15 31 31 H 1.00899 * 111.00368 * 56.04966 * 20 19 18 32 32 H 1.00901 * 111.00282 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.16808 * 180.28095 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5399 1.4402 0.7000 7 6 2.0080 -1.2118 -0.0005 8 1 3.0715 -1.2212 -0.1887 9 6 1.3227 -2.4241 0.2451 10 6 1.8043 -3.6320 -0.2946 11 6 1.1318 -4.8081 -0.0518 12 6 -0.0177 -4.8098 0.7211 13 6 -0.5066 -3.6224 1.2608 14 7 -1.6664 -3.6355 2.0392 15 16 -3.1471 -3.8004 1.3162 16 8 -2.9882 -4.9085 0.4410 17 8 -4.0635 -3.8491 2.4012 18 6 -3.3619 -2.2676 0.3700 19 6 -4.6670 -2.3380 -0.4254 20 7 -4.8406 -1.0970 -1.1920 21 6 0.1546 -2.4302 1.0271 22 1 -0.4850 0.8400 0.0004 23 1 2.6998 -3.6356 -0.8981 24 1 1.5022 -5.7343 -0.4659 25 1 -0.5383 -5.7377 0.9065 26 1 -1.6045 -3.5481 3.0033 27 1 -3.3989 -1.4202 1.0546 28 1 -2.5243 -2.1440 -0.3164 29 1 -4.6300 -3.1853 -1.1100 30 1 -5.5047 -2.4617 0.2609 31 1 -4.0455 -0.9267 -1.7895 32 1 -5.6964 -1.1186 -1.7261 33 1 -0.2209 -1.5096 1.4487 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313421287.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:29 Heat of formation + Delta-G solvation = -58.372585 kcal Electronic energy + Delta-G solvation = -18856.576406 eV Core-core repulsion = 15815.690794 eV Total energy + Delta-G solvation = -3040.885612 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.01860 -36.67205 -35.61667 -35.33560 -34.53658 -33.23617 -29.66901 -29.24176 -27.93398 -25.35246 -22.57906 -21.12190 -20.87881 -18.94981 -17.66512 -17.35132 -16.51577 -16.20954 -15.60621 -15.03723 -14.79969 -14.73987 -14.15959 -13.90353 -13.60670 -13.00300 -12.63481 -12.20698 -12.08286 -11.76800 -11.68399 -11.61875 -11.45081 -11.23438 -11.10029 -10.74047 -10.72840 -10.45100 -10.10277 -9.86743 -9.36567 -8.99395 -8.77448 -7.52708 -7.50606 -6.83490 -4.50127 0.63281 2.58620 2.78138 3.02158 3.05324 3.11651 3.15792 3.86161 4.06380 4.49520 4.59597 4.73179 4.78916 5.07639 5.36637 5.44583 5.72632 6.02468 6.15710 6.27458 6.47271 6.70352 6.93465 7.02681 7.03554 7.17235 7.19663 7.39612 7.62417 7.72905 7.86845 7.92365 8.15664 8.49369 8.76047 8.79605 10.10780 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017370 B = 0.007485 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.614066 B = 3739.951532 C = 4771.874490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.108 3.892 10 C -0.210 4.210 11 C -0.094 4.094 12 C -0.213 4.213 13 C 0.119 3.881 14 N -1.055 6.055 15 S 2.613 3.387 16 O -0.953 6.953 17 O -0.975 6.975 18 C -0.625 4.625 19 C 0.077 3.923 20 N -0.841 5.841 21 C -0.152 4.152 22 H 0.281 0.719 23 H 0.096 0.904 24 H 0.095 0.905 25 H 0.101 0.899 26 H 0.413 0.587 27 H 0.139 0.861 28 H 0.146 0.854 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.350 0.650 32 H 0.341 0.659 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 -0.568 -0.335 5.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.491 4.491 8 H 0.097 0.903 9 C 0.105 3.895 10 C -0.230 4.230 11 C -0.113 4.113 12 C -0.235 4.235 13 C 0.025 3.975 14 N -0.809 5.809 15 S 2.707 3.293 16 O -0.943 6.943 17 O -0.965 6.965 18 C -0.755 4.755 19 C -0.056 4.056 20 N -0.372 5.372 21 C -0.174 4.174 22 H 0.092 0.908 23 H 0.115 0.885 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.249 0.751 27 H 0.157 0.843 28 H 0.164 0.836 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.153 0.847 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.113 -0.803 0.291 6.172 hybrid contribution 0.733 0.959 -0.695 1.393 sum -5.380 0.157 -0.404 5.397 Atomic orbital electron populations 1.69722 1.07369 1.29247 1.36549 1.25860 0.94882 1.01207 0.92273 0.86275 0.80482 0.80565 0.79199 1.19551 1.20142 1.18583 1.19548 0.96211 0.90364 1.42949 0.90343 1.17502 0.91192 0.92307 0.88534 1.21174 1.02732 0.93284 1.05846 1.20487 0.95397 0.96851 0.98574 1.20701 0.99511 0.96109 1.07215 1.17202 0.88605 0.94025 0.97628 1.52806 1.20599 1.90816 1.16655 1.04901 0.72710 0.76887 0.74842 1.93583 1.84880 1.47491 1.68318 1.93553 1.62868 1.87584 1.52524 1.30637 1.06303 1.23489 1.15047 1.21356 0.95057 0.92330 0.96848 1.58656 1.08138 1.36102 1.34286 1.21643 0.98738 0.95789 1.01275 0.90795 0.88547 0.88657 0.88131 0.75080 0.84298 0.83625 0.94102 0.90216 0.83700 0.84652 0.85289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.83 10.81 55.55 0.60 -18.23 16 2 C 0.07 1.73 5.24 -17.34 -0.09 1.64 16 3 Si 0.91 17.73 29.58 -169.99 -5.03 12.70 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.35 9.07 -37.74 -0.34 -11.69 16 8 H 0.08 1.87 7.87 -52.48 -0.41 1.45 16 9 C 0.11 2.66 5.56 -106.85 -0.59 2.06 16 10 C -0.21 -4.82 9.79 -38.83 -0.38 -5.20 16 11 C -0.09 -2.02 10.01 -39.70 -0.40 -2.42 16 12 C -0.21 -4.67 9.17 -39.09 -0.36 -5.03 16 13 C 0.12 2.55 5.74 -83.86 -0.48 2.07 16 14 N -1.05 -19.17 5.59 32.37 0.18 -18.99 16 15 S 2.61 45.45 5.44 -107.50 -0.59 44.87 16 16 O -0.95 -19.29 16.84 -57.54 -0.97 -20.25 16 17 O -0.97 -18.17 18.08 -57.54 -1.04 -19.21 16 18 C -0.63 -9.88 6.34 37.16 0.24 -9.65 16 19 C 0.08 1.06 6.79 -3.82 -0.03 1.03 16 20 N -0.84 -10.65 9.62 -10.37 -0.10 -10.75 16 21 C -0.15 -3.56 8.57 -38.68 -0.33 -3.89 16 22 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 23 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 24 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 25 H 0.10 2.13 7.83 -52.49 -0.41 1.72 16 26 H 0.41 6.52 8.92 -34.47 -0.31 6.21 16 27 H 0.14 2.12 8.14 -51.93 -0.42 1.70 16 28 H 0.15 2.56 8.14 -51.92 -0.42 2.13 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.35 4.42 8.99 -39.29 -0.35 4.06 16 32 H 0.34 3.35 9.08 -39.29 -0.36 3.00 16 33 H 0.13 3.07 6.17 -52.49 -0.32 2.75 16 LS Contribution 299.41 15.07 4.51 4.51 Total: -1.00 -29.39 299.41 -9.03 -38.42 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: -3.84 Total: 18.02 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: -2.77 Total: -31.08 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.68 Total: -47.97 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -2.01 Total: -39.46 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 16 Polarization: 45.45 SS G_CDS: -0.59 Total: 44.87 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.39 -9.03 -38.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313421287.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.954 kcal (2) G-P(sol) polarization free energy of solvation -29.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds