Wall clock time and date at job start Mon Mar 30 2020 00:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47662 * 2 1 4 4 C 1.50695 * 109.47074 * 239.99301 * 2 1 3 5 5 H 1.08008 * 120.00545 * 275.00570 * 4 2 1 6 6 C 1.37878 * 119.99819 * 95.00237 * 4 2 1 7 7 N 1.31521 * 119.99839 * 184.91505 * 6 4 2 8 8 Si 1.86792 * 120.00294 * 4.91649 * 6 4 2 9 9 H 1.48500 * 109.47439 * 84.82637 * 8 6 4 10 10 H 1.48497 * 109.47685 * 204.83204 * 8 6 4 11 11 H 1.48500 * 109.46852 * 324.82954 * 8 6 4 12 12 N 1.46509 * 109.46929 * 119.99559 * 2 1 3 13 13 S 1.65598 * 119.99991 * 264.99631 * 12 2 1 14 14 O 1.42097 * 106.40246 * 311.46048 * 13 12 2 15 15 O 1.42096 * 106.40001 * 178.53993 * 13 12 2 16 16 C 1.76206 * 107.21609 * 65.00209 * 13 12 2 17 17 C 1.35042 * 125.61496 * 89.99925 * 16 13 12 18 18 C 1.40470 * 107.11069 * 179.97438 * 17 16 13 19 19 C 1.36560 * 106.70667 * 0.02562 * 18 17 16 20 20 C 1.43194 * 125.98945 * 180.02562 * 19 18 17 21 21 N 6.63390 * 56.45991 * 35.93431 * 2 1 3 22 22 O 1.34050 * 125.61339 * 269.97110 * 16 13 12 23 23 H 1.08996 * 109.47473 * 175.05481 * 1 2 3 24 24 H 1.09003 * 109.46656 * 295.05692 * 1 2 3 25 25 H 1.08998 * 109.47352 * 55.05254 * 1 2 3 26 26 H 0.96997 * 119.99857 * 179.97438 * 7 6 4 27 27 H 0.97002 * 119.99972 * 84.99971 * 12 2 1 28 28 H 1.08001 * 126.44613 * 0.24308 * 17 16 13 29 29 H 1.08005 * 126.65277 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1354 -1.7857 -1.2289 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6135 -3.4621 8 14 2.3136 1.8788 -2.3176 9 1 3.5991 2.3947 -1.7823 10 1 2.1059 2.3987 -3.6930 11 1 1.1986 2.3273 -1.4453 12 7 2.0183 -0.6906 1.1963 13 16 2.4122 0.1773 2.5505 14 8 3.2437 1.2443 2.1155 15 8 2.8123 -0.7696 3.5316 16 6 0.9275 0.9150 3.1474 17 6 0.0754 0.3596 4.0357 18 6 -0.9698 1.2768 4.2348 19 6 -0.6983 2.3585 3.4468 20 6 -1.5000 3.5396 3.3337 21 7 -2.1354 4.4771 3.2449 22 8 0.4581 2.1201 2.7948 23 1 -0.3634 -1.0238 -0.0886 24 1 -0.3633 0.4353 0.9310 25 1 -0.3634 0.5886 -0.8423 26 1 2.9363 -0.1053 -4.2555 27 1 2.1109 -1.6562 1.1951 28 1 0.1802 -0.6060 4.5080 29 1 -1.8229 1.1509 4.8851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330675007.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:57 Heat of formation + Delta-G solvation = -19.699761 kcal Electronic energy + Delta-G solvation = -18533.256551 eV Core-core repulsion = 15358.214823 eV Total energy + Delta-G solvation = -3175.041728 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.02193 -37.09179 -37.01446 -35.79128 -35.65988 -33.61705 -32.35841 -30.71507 -29.24751 -25.45719 -24.15006 -22.49937 -20.96604 -19.83883 -19.40237 -18.23907 -17.50838 -16.83831 -16.14253 -15.77824 -14.80381 -14.75988 -14.07288 -13.79552 -13.76959 -13.67690 -13.41762 -12.98722 -12.83328 -12.61735 -12.14250 -12.04843 -11.92514 -11.83160 -11.45269 -11.14304 -10.82986 -10.67898 -10.50254 -9.92564 -9.46325 -9.36787 -8.85977 -8.68930 -6.31940 -4.33202 0.26197 0.50060 1.67608 1.71754 2.59976 2.89476 3.19894 3.28189 3.31813 3.35784 3.77220 3.88043 4.25099 4.38966 4.75213 4.97636 5.05625 5.08523 5.29522 5.80207 5.85898 6.12062 6.27490 6.33124 6.42682 6.86235 6.94318 7.00958 7.31620 7.70630 8.25099 8.70989 9.27465 10.79100 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.007754 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.633785 B = 3610.158681 C = 4449.953336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.230 3.770 3 H 0.053 0.947 4 C -0.512 4.512 5 H 0.085 0.915 6 C 0.081 3.919 7 N -0.880 5.880 8 Si 0.864 3.136 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.261 1.261 12 N -1.076 6.076 13 S 2.688 3.312 14 O -0.937 6.937 15 O -0.952 6.952 16 C -0.523 4.523 17 C -0.101 4.101 18 C -0.141 4.141 19 C 0.076 3.924 20 C 0.289 3.711 21 N -0.365 5.365 22 O -0.095 6.095 23 H 0.058 0.942 24 H 0.022 0.978 25 H 0.059 0.941 26 H 0.270 0.730 27 H 0.417 0.583 28 H 0.179 0.821 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 1.080 13.666 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.126 3.874 3 H 0.071 0.929 4 C -0.553 4.553 5 H 0.103 0.897 6 C -0.125 4.125 7 N -0.516 5.516 8 Si 0.690 3.310 9 H -0.189 1.189 10 H -0.209 1.209 11 H -0.186 1.186 12 N -0.840 5.840 13 S 2.769 3.231 14 O -0.926 6.926 15 O -0.942 6.942 16 C -0.652 4.652 17 C -0.121 4.121 18 C -0.164 4.164 19 C 0.020 3.980 20 C -0.028 4.028 21 N -0.043 5.043 22 O 0.015 5.985 23 H 0.077 0.923 24 H 0.041 0.959 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.253 0.747 28 H 0.197 0.803 29 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -6.538 3.094 13.562 15.371 hybrid contribution -0.614 0.251 0.039 0.664 sum -7.152 3.345 13.602 15.727 Atomic orbital electron populations 1.22418 0.98426 1.01730 0.99137 1.19144 0.90884 0.93590 0.83754 0.92896 1.20965 1.44690 0.95894 0.93793 0.89674 1.24985 0.93586 0.98647 0.95240 1.69865 1.43651 1.36359 1.01733 0.87048 0.80343 0.85869 0.77773 1.18852 1.20860 1.18575 1.55966 1.82937 1.19815 1.25293 1.02992 0.72749 0.73969 0.73415 1.93616 1.61394 1.56640 1.80974 1.93603 1.79038 1.60539 1.60996 1.37014 1.23317 0.92216 1.12640 1.21875 0.92230 1.01408 0.96623 1.22069 1.01367 0.91845 1.01098 1.17161 0.88595 0.92417 0.99854 1.23468 0.93493 0.91040 0.94753 1.81337 1.08668 1.07962 1.06325 1.84327 1.30245 1.30928 1.53043 0.92268 0.95900 0.92245 0.91982 0.74662 0.80344 0.80963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 9.50 37.16 0.35 -2.56 15 2 C 0.23 4.87 2.56 -69.08 -0.18 4.70 15 3 H 0.05 1.19 4.65 -51.93 -0.24 0.95 15 4 C -0.51 -12.90 9.11 -34.44 -0.31 -13.21 15 5 H 0.09 2.26 8.06 -52.48 -0.42 1.83 15 6 C 0.08 2.17 5.47 -17.82 -0.10 2.08 15 7 N -0.88 -24.88 13.96 55.43 0.77 -24.11 15 8 Si 0.86 20.46 26.99 -169.99 -4.59 15.87 15 9 H -0.26 -6.34 7.11 56.52 0.40 -5.94 15 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 11 H -0.26 -5.85 6.82 56.52 0.39 -5.46 15 12 N -1.08 -18.86 5.46 -5.88 -0.03 -18.90 15 13 S 2.69 44.71 5.87 -107.50 -0.63 44.08 15 14 O -0.94 -19.13 17.36 -57.26 -0.99 -20.12 15 15 O -0.95 -15.82 17.83 -57.17 -1.02 -16.84 15 16 C -0.52 -7.48 6.11 29.60 0.18 -7.30 15 17 C -0.10 -1.10 10.59 -39.88 -0.42 -1.52 15 18 C -0.14 -1.35 10.84 -39.35 -0.43 -1.78 15 19 C 0.08 0.94 7.08 -38.27 -0.27 0.67 15 20 C 0.29 3.61 15.88 -22.48 -0.36 3.25 15 21 N -0.36 -5.01 18.54 41.84 0.78 -4.24 15 22 O -0.09 -1.44 10.49 4.79 0.05 -1.39 15 23 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 24 H 0.02 0.36 6.68 -51.93 -0.35 0.01 15 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 15 26 H 0.27 7.18 8.31 -40.82 -0.34 6.85 15 27 H 0.42 6.40 8.83 -34.47 -0.30 6.09 15 28 H 0.18 1.43 8.06 -52.49 -0.42 1.00 15 29 H 0.17 1.00 8.06 -52.48 -0.42 0.58 15 LS Contribution 283.57 15.07 4.27 4.27 Total: -1.00 -30.92 283.57 -5.08 -36.00 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.16 Total: 1.05 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -1.53 Total: -15.68 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 1.52 Total: -47.24 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -1.96 Total: -38.35 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.59 Total: 15.87 kcal Atomic # 16 Polarization: 44.71 SS G_CDS: -0.63 Total: 44.08 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.92 -5.08 -36.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330675007.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.303 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds