Wall clock time and date at job start Mon Mar 30 2020 00:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47662 * 2 1 4 4 C 1.50695 * 109.47074 * 239.99301 * 2 1 3 5 5 H 1.08008 * 120.00545 * 275.00570 * 4 2 1 6 6 C 1.37878 * 119.99819 * 95.00237 * 4 2 1 7 7 N 1.31521 * 119.99839 * 184.91505 * 6 4 2 8 8 Si 1.86792 * 120.00294 * 4.91649 * 6 4 2 9 9 H 1.48500 * 109.47439 * 84.82637 * 8 6 4 10 10 H 1.48497 * 109.47685 * 204.83204 * 8 6 4 11 11 H 1.48500 * 109.46852 * 324.82954 * 8 6 4 12 12 N 1.46509 * 109.46929 * 119.99559 * 2 1 3 13 13 S 1.65598 * 119.99991 * 264.99631 * 12 2 1 14 14 O 1.42097 * 106.40246 * 311.46048 * 13 12 2 15 15 O 1.42096 * 106.40001 * 178.53993 * 13 12 2 16 16 C 1.76206 * 107.21609 * 65.00209 * 13 12 2 17 17 C 1.35042 * 125.61496 * 89.99925 * 16 13 12 18 18 C 1.40470 * 107.11069 * 179.97438 * 17 16 13 19 19 C 1.36560 * 106.70667 * 0.02562 * 18 17 16 20 20 C 1.43194 * 125.98945 * 180.02562 * 19 18 17 21 21 N 6.63390 * 56.45991 * 35.93431 * 2 1 3 22 22 O 1.34050 * 125.61339 * 269.97110 * 16 13 12 23 23 H 1.08996 * 109.47473 * 175.05481 * 1 2 3 24 24 H 1.09003 * 109.46656 * 295.05692 * 1 2 3 25 25 H 1.08998 * 109.47352 * 55.05254 * 1 2 3 26 26 H 0.96997 * 119.99857 * 179.97438 * 7 6 4 27 27 H 0.97002 * 119.99972 * 84.99971 * 12 2 1 28 28 H 1.08001 * 126.44613 * 0.24308 * 17 16 13 29 29 H 1.08005 * 126.65277 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.1354 -1.7857 -1.2289 6 6 2.3602 0.0119 -2.3580 7 7 2.7059 -0.6135 -3.4621 8 14 2.3136 1.8788 -2.3176 9 1 3.5991 2.3947 -1.7823 10 1 2.1059 2.3987 -3.6930 11 1 1.1986 2.3273 -1.4453 12 7 2.0183 -0.6906 1.1963 13 16 2.4122 0.1773 2.5505 14 8 3.2437 1.2443 2.1155 15 8 2.8123 -0.7696 3.5316 16 6 0.9275 0.9150 3.1474 17 6 0.0754 0.3596 4.0357 18 6 -0.9698 1.2768 4.2348 19 6 -0.6983 2.3585 3.4468 20 6 -1.5000 3.5396 3.3337 21 7 -2.1354 4.4771 3.2449 22 8 0.4581 2.1201 2.7948 23 1 -0.3634 -1.0238 -0.0886 24 1 -0.3633 0.4353 0.9310 25 1 -0.3634 0.5886 -0.8423 26 1 2.9363 -0.1053 -4.2555 27 1 2.1109 -1.6562 1.1951 28 1 0.1802 -0.6060 4.5080 29 1 -1.8229 1.1509 4.8851 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330675007.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:56 Heat of formation + Delta-G solvation = -44.179393 kcal Electronic energy + Delta-G solvation = -18534.318067 eV Core-core repulsion = 15358.214823 eV Total energy + Delta-G solvation = -3176.103244 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.98979 -38.49477 -38.02433 -37.40695 -37.09343 -34.54457 -34.28192 -31.68683 -30.82034 -27.27947 -25.18048 -23.41043 -22.64721 -20.87984 -20.62961 -19.71914 -18.87828 -18.20522 -17.49930 -17.33639 -16.38247 -15.75791 -15.43085 -14.99713 -14.78474 -14.75811 -14.59300 -14.53139 -14.23063 -13.78991 -13.71508 -13.54129 -13.36601 -13.27512 -12.89604 -12.70031 -12.61364 -12.29463 -11.82250 -11.38709 -11.24730 -10.80406 -10.42589 -10.22643 -8.34669 -6.38443 -0.93508 -0.58635 0.70911 0.83828 1.32024 1.39774 1.43008 1.65939 1.96431 1.98622 2.29911 2.54298 2.80062 3.05441 3.54194 3.59174 4.06758 4.22565 4.24131 4.56553 4.60829 4.76894 4.88263 5.04624 5.34032 5.40452 5.49490 5.53589 5.91379 6.24791 6.31230 6.69672 7.26738 8.80449 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.018843 B = 0.007754 C = 0.006291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.633785 B = 3610.158681 C = 4449.953336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.233 3.767 3 H 0.040 0.960 4 C -0.514 4.514 5 H 0.061 0.939 6 C 0.031 3.969 7 N -0.930 5.930 8 Si 0.904 3.096 9 H -0.273 1.273 10 H -0.278 1.278 11 H -0.241 1.241 12 N -1.082 6.082 13 S 2.721 3.279 14 O -0.982 6.982 15 O -0.950 6.950 16 C -0.556 4.556 17 C -0.073 4.073 18 C -0.111 4.111 19 C 0.065 3.935 20 C 0.305 3.695 21 N -0.391 5.391 22 O -0.126 6.126 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.269 0.731 27 H 0.427 0.573 28 H 0.213 0.787 29 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.520 1.095 16.528 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.128 3.872 3 H 0.058 0.942 4 C -0.554 4.554 5 H 0.080 0.920 6 C -0.169 4.169 7 N -0.569 5.569 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.204 1.204 11 H -0.164 1.164 12 N -0.845 5.845 13 S 2.805 3.195 14 O -0.972 6.972 15 O -0.939 6.939 16 C -0.689 4.689 17 C -0.094 4.094 18 C -0.133 4.133 19 C 0.009 3.991 20 C -0.011 4.011 21 N -0.069 5.069 22 O -0.019 6.019 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.264 0.736 28 H 0.230 0.770 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -8.503 3.068 16.389 18.717 hybrid contribution -0.066 0.202 -0.595 0.632 sum -8.569 3.271 15.794 18.264 Atomic orbital electron populations 1.22305 0.96000 1.02622 1.00366 1.18934 0.92602 0.92463 0.83235 0.94228 1.21235 1.43522 0.95127 0.95530 0.92039 1.25616 0.94077 1.02010 0.95220 1.69972 1.46781 1.37633 1.02522 0.86396 0.80490 0.82125 0.78223 1.19840 1.20383 1.16399 1.55486 1.83288 1.20322 1.25450 1.01347 0.72547 0.72957 0.72618 1.93567 1.63990 1.57905 1.81755 1.93609 1.79494 1.60662 1.60182 1.36175 1.23912 0.93340 1.15504 1.22439 0.90667 1.02268 0.93981 1.22621 1.01592 0.89546 0.99569 1.17447 0.88002 0.93080 1.00547 1.23462 0.92928 0.90753 0.93944 1.81362 1.09700 1.08613 1.07240 1.84282 1.31663 1.31410 1.54502 0.91232 0.92934 0.93097 0.92130 0.73574 0.76982 0.76428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.37 9.50 71.98 0.68 -4.68 15 2 C 0.23 9.71 2.56 44.24 0.11 9.82 15 3 H 0.04 1.77 4.65 -2.39 -0.01 1.76 15 4 C -0.51 -26.33 9.11 25.60 0.23 -26.10 15 5 H 0.06 3.36 8.06 -2.91 -0.02 3.34 15 6 C 0.03 1.72 5.47 84.65 0.46 2.18 15 7 N -0.93 -54.50 13.96 21.45 0.30 -54.20 15 8 Si 0.90 42.49 26.99 68.60 1.85 44.34 15 9 H -0.27 -13.12 7.11 99.48 0.71 -12.42 15 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 11 H -0.24 -10.37 6.82 99.48 0.68 -9.69 15 12 N -1.08 -36.69 5.46 -172.52 -0.94 -37.63 15 13 S 2.72 86.01 5.87 -56.49 -0.33 85.68 15 14 O -0.98 -39.86 17.36 -127.92 -2.22 -42.08 15 15 O -0.95 -29.21 17.83 -128.00 -2.28 -31.50 15 16 C -0.56 -14.17 6.11 67.08 0.41 -13.76 15 17 C -0.07 -1.20 10.59 22.08 0.23 -0.97 15 18 C -0.11 -1.50 10.84 22.42 0.24 -1.26 15 19 C 0.07 1.37 7.08 23.12 0.16 1.53 15 20 C 0.30 6.80 15.88 88.33 1.40 8.21 15 21 N -0.39 -9.97 18.54 19.00 0.35 -9.62 15 22 O -0.13 -3.50 10.49 -5.78 -0.06 -3.56 15 23 H 0.07 2.26 8.14 -2.39 -0.02 2.24 15 24 H 0.05 1.51 6.68 -2.39 -0.02 1.50 15 25 H 0.05 1.85 8.14 -2.39 -0.02 1.84 15 26 H 0.27 14.91 8.31 -92.71 -0.77 14.14 15 27 H 0.43 12.66 8.83 -96.74 -0.85 11.80 15 28 H 0.21 2.01 8.06 -2.91 -0.02 1.99 15 29 H 0.22 0.92 8.06 -2.91 -0.02 0.89 15 Total: -1.00 -69.19 283.57 0.94 -68.24 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: 0.33 Total: 5.36 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 3.95 Total: -25.03 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -0.29 Total: -101.45 kcal Atomic # 8 Polarization: -72.58 SS G_CDS: -4.56 Total: -77.14 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.85 Total: 44.34 kcal Atomic # 16 Polarization: 86.01 SS G_CDS: -0.33 Total: 85.68 kcal Total: -69.19 0.94 -68.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330675007.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.062 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds