Wall clock time and date at job start Mon Mar 30 2020 00:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47434 * 2 1 4 4 C 1.50697 * 109.47456 * 120.00331 * 2 1 3 5 5 H 1.08004 * 120.00307 * 119.99721 * 4 2 1 6 6 C 1.37881 * 120.00094 * 300.00191 * 4 2 1 7 7 N 1.31515 * 119.99889 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99823 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47797 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47043 * 120.00173 * 8 6 4 11 11 H 1.48507 * 109.47035 * 239.99646 * 8 6 4 12 12 N 1.46503 * 109.46988 * 240.00412 * 2 1 3 13 13 S 1.65598 * 119.99980 * 95.00083 * 12 2 1 14 14 O 1.42104 * 106.40229 * 311.46132 * 13 12 2 15 15 O 1.42100 * 106.40244 * 178.53890 * 13 12 2 16 16 C 1.76197 * 107.22060 * 64.99943 * 13 12 2 17 17 C 1.35055 * 125.61683 * 90.00177 * 16 13 12 18 18 C 1.40475 * 107.10934 * 179.97438 * 17 16 13 19 19 C 1.36547 * 106.70482 * 359.97438 * 18 17 16 20 20 C 1.43210 * 125.98209 * 180.02562 * 19 18 17 21 21 N 6.63394 * 127.72175 * 354.29608 * 2 1 3 22 22 O 1.34052 * 125.61902 * 269.97749 * 16 13 12 23 23 H 1.09002 * 109.46938 * 299.99761 * 1 2 3 24 24 H 1.09000 * 109.47357 * 59.99146 * 1 2 3 25 25 H 1.08992 * 109.47292 * 180.02562 * 1 2 3 26 26 H 0.96994 * 119.99769 * 179.97438 * 7 6 4 27 27 H 0.96997 * 119.99868 * 274.99724 * 12 2 1 28 28 H 1.08001 * 126.44338 * 0.23881 * 17 16 13 29 29 H 1.08000 * 126.64089 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8300 2.6035 8 14 2.3215 -1.1206 4.0078 9 1 3.1456 -2.2879 3.6036 10 1 3.1467 -0.1877 4.8164 11 1 1.1662 -1.5870 4.8160 12 7 2.0183 -0.6905 -1.1962 13 16 2.4121 0.1773 -2.5505 14 8 1.3246 1.0595 -2.7921 15 8 2.8775 -0.7632 -3.5086 16 6 3.7927 1.1911 -2.1372 17 6 5.0911 0.8430 -2.2674 18 6 5.8578 1.9348 -1.8277 19 6 4.9762 2.9057 -1.4473 20 6 5.3178 4.1973 -0.9316 21 7 5.5888 5.2214 -0.5215 22 8 3.7273 2.4351 -1.6421 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5140 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 0.7090 1.1611 3.4845 27 1 2.1109 -1.6561 -1.1950 28 1 5.4688 -0.0963 -2.6434 29 1 6.9357 1.9946 -1.7965 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330675008.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:58 Heat of formation + Delta-G solvation = -43.947236 kcal Electronic energy + Delta-G solvation = -18426.921264 eV Core-core repulsion = 15250.828087 eV Total energy + Delta-G solvation = -3176.093177 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.94399 -38.43661 -38.01587 -37.29255 -37.03920 -34.52061 -34.13725 -31.65135 -30.16369 -27.21688 -25.17204 -23.41905 -22.85002 -20.80754 -20.55326 -19.40428 -18.68865 -18.13807 -17.43234 -17.14245 -16.40052 -15.75363 -15.36682 -14.99179 -14.76606 -14.74825 -14.54131 -14.22056 -14.06924 -13.76715 -13.56357 -13.37021 -13.22885 -13.01740 -12.84049 -12.66717 -12.35118 -12.20444 -11.99701 -11.35921 -11.11020 -10.60703 -10.33670 -10.15371 -8.12464 -6.27338 -0.85657 -0.53510 0.72032 0.85712 1.46181 1.49681 1.59414 1.67712 1.96934 2.02273 2.46287 2.59781 2.82655 3.18436 3.58959 3.61218 4.10513 4.23999 4.48874 4.59248 4.90846 5.06061 5.13237 5.17766 5.43423 5.60667 5.75394 5.90922 6.05885 6.07233 6.42103 6.85093 7.43275 8.93000 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.014778 B = 0.008031 C = 0.006139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.300205 B = 3485.768658 C = 4559.951989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.275 3.725 3 H 0.022 0.978 4 C -0.535 4.535 5 H 0.078 0.922 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.960 3.040 9 H -0.259 1.259 10 H -0.287 1.287 11 H -0.284 1.284 12 N -1.084 6.084 13 S 2.733 3.267 14 O -0.975 6.975 15 O -0.951 6.951 16 C -0.555 4.555 17 C -0.080 4.080 18 C -0.114 4.114 19 C 0.061 3.939 20 C 0.305 3.695 21 N -0.391 5.391 22 O -0.126 6.126 23 H 0.068 0.932 24 H 0.030 0.970 25 H 0.044 0.956 26 H 0.264 0.736 27 H 0.425 0.575 28 H 0.214 0.786 29 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.547 -2.763 -8.385 13.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.169 3.831 3 H 0.039 0.961 4 C -0.574 4.574 5 H 0.096 0.904 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.786 3.214 9 H -0.182 1.182 10 H -0.214 1.214 11 H -0.210 1.210 12 N -0.848 5.848 13 S 2.815 3.185 14 O -0.965 6.965 15 O -0.941 6.941 16 C -0.687 4.687 17 C -0.101 4.101 18 C -0.137 4.137 19 C 0.005 3.995 20 C -0.011 4.011 21 N -0.069 5.069 22 O -0.019 6.019 23 H 0.087 0.913 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.262 0.738 28 H 0.231 0.769 29 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 9.190 -0.724 -8.372 12.452 hybrid contribution 0.392 -0.530 1.343 1.496 sum 9.582 -1.254 -7.029 11.950 Atomic orbital electron populations 1.22145 0.98136 1.00386 1.00697 1.18331 0.91481 0.91441 0.81826 0.96057 1.21664 1.31844 1.13460 0.90434 0.90416 1.25704 0.95098 0.95603 1.02028 1.70024 1.37238 1.23976 1.24380 0.85466 0.78037 0.78732 0.79139 1.18222 1.21368 1.20998 1.55357 1.79657 1.19303 1.30465 1.01067 0.72448 0.72505 0.72473 1.93566 1.51032 1.67598 1.84347 1.93603 1.82442 1.60067 1.57996 1.36368 1.20722 0.94820 1.16830 1.22443 0.89331 1.02076 0.96232 1.22617 1.02727 0.89703 0.98624 1.17484 0.84467 0.90792 1.06761 1.23473 0.94319 0.90204 0.93054 1.81323 1.07103 1.09777 1.08704 1.84275 1.28746 1.26163 1.62702 0.91288 0.95063 0.93678 0.92720 0.73788 0.76937 0.76428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.16 9.29 71.98 0.67 -6.49 15 2 C 0.27 12.51 2.76 44.24 0.12 12.64 15 3 H 0.02 1.08 7.85 -2.39 -0.02 1.06 15 4 C -0.53 -25.83 8.76 25.60 0.22 -25.60 15 5 H 0.08 3.50 7.81 -2.91 -0.02 3.48 15 6 C 0.02 0.80 5.30 84.66 0.45 1.25 15 7 N -0.92 -49.77 11.32 21.45 0.24 -49.53 15 8 Si 0.96 40.07 29.54 68.60 2.03 42.10 15 9 H -0.26 -10.12 7.11 99.48 0.71 -9.42 15 10 H -0.29 -12.09 7.11 99.48 0.71 -11.38 15 11 H -0.28 -11.85 7.11 99.48 0.71 -11.14 15 12 N -1.08 -38.39 5.46 -172.53 -0.94 -39.33 15 13 S 2.73 90.23 5.80 -56.49 -0.33 89.90 15 14 O -0.98 -39.52 17.28 -127.92 -2.21 -41.73 15 15 O -0.95 -29.94 17.83 -128.00 -2.28 -32.23 15 16 C -0.56 -16.82 7.18 67.09 0.48 -16.34 15 17 C -0.08 -1.74 10.59 22.08 0.23 -1.50 15 18 C -0.11 -2.18 10.84 22.42 0.24 -1.94 15 19 C 0.06 1.64 7.08 23.12 0.16 1.81 15 20 C 0.31 8.47 15.89 88.34 1.40 9.87 15 21 N -0.39 -11.82 18.54 19.01 0.35 -11.47 15 22 O -0.13 -4.28 10.67 -5.71 -0.06 -4.35 15 23 H 0.07 3.56 6.07 -2.39 -0.01 3.54 15 24 H 0.03 1.38 7.64 -2.39 -0.02 1.36 15 25 H 0.04 1.93 8.14 -2.39 -0.02 1.91 15 26 H 0.26 13.69 8.31 -92.71 -0.77 12.92 15 27 H 0.43 12.74 8.83 -96.75 -0.85 11.89 15 28 H 0.21 2.95 8.06 -2.91 -0.02 2.93 15 29 H 0.22 2.01 8.06 -2.91 -0.02 1.98 15 Total: -1.00 -64.96 286.20 1.14 -63.82 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.36 Total: 9.13 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: 3.99 Total: -26.31 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -0.35 Total: -100.33 kcal Atomic # 8 Polarization: -73.75 SS G_CDS: -4.55 Total: -78.30 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 2.03 Total: 42.10 kcal Atomic # 16 Polarization: 90.23 SS G_CDS: -0.33 Total: 89.90 kcal Total: -64.96 1.14 -63.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330675008.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.871 kcal (2) G-P(sol) polarization free energy of solvation -64.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds