Wall clock time and date at job start Mon Mar 30 2020 00:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47185 * 2 1 4 4 C 1.36938 * 120.00014 * 293.75851 * 3 2 1 5 5 H 1.08003 * 119.99777 * 149.39462 * 4 3 2 6 6 C 1.38806 * 119.99964 * 329.39519 * 4 3 2 7 7 N 1.31618 * 120.00026 * 337.57595 * 6 4 3 8 8 Si 1.86797 * 120.00279 * 157.57405 * 6 4 3 9 9 H 1.48508 * 109.47011 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47221 * 119.99701 * 8 6 4 11 11 H 1.48505 * 109.47605 * 240.00118 * 8 6 4 12 12 S 1.65602 * 120.00241 * 113.75211 * 3 2 1 13 13 O 1.42103 * 106.39946 * 336.46727 * 12 3 2 14 14 O 1.42100 * 106.40483 * 203.54429 * 12 3 2 15 15 C 1.76198 * 107.21439 * 90.00261 * 12 3 2 16 16 C 1.35052 * 125.61688 * 90.00585 * 15 12 3 17 17 C 1.40476 * 107.10899 * 180.02562 * 16 15 12 18 18 C 1.36552 * 106.70574 * 359.97438 * 17 16 15 19 19 C 1.43196 * 125.98146 * 179.97438 * 18 17 16 20 20 N 7.03202 * 164.59664 * 127.80282 * 2 1 3 21 21 O 1.34052 * 125.61589 * 270.02260 * 15 12 3 22 22 H 1.08995 * 109.46744 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46914 * 299.99531 * 1 2 3 24 24 H 1.08997 * 109.47333 * 59.99714 * 1 2 3 25 25 H 1.08996 * 109.47612 * 240.00490 * 2 1 3 26 26 H 1.09000 * 109.47357 * 119.99747 * 2 1 3 27 27 H 0.97003 * 119.99985 * 180.02562 * 7 6 4 28 28 H 1.07997 * 126.44310 * 0.02562 * 16 15 12 29 29 H 1.08000 * 126.64558 * 179.73350 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 1.7962 2.1861 -1.0854 5 1 1.6829 3.2520 -0.9531 6 6 1.7165 1.6319 -2.3556 7 7 2.2700 0.4630 -2.5995 8 14 0.8235 2.5451 -3.7187 9 1 0.2927 3.8274 -3.1902 10 1 1.7679 2.8206 -4.8311 11 1 -0.3006 1.7130 -4.2182 12 16 2.8390 1.9694 1.3126 13 8 2.4447 1.1736 2.4219 14 8 2.6915 3.3823 1.2781 15 6 4.5498 1.6412 1.0480 16 6 5.4219 2.4648 0.4276 17 6 6.6711 1.8224 0.4310 18 6 6.4947 0.6244 1.0622 19 6 7.5067 -0.3621 1.2929 20 7 8.3094 -1.1449 1.4758 21 8 5.2001 0.5326 1.4292 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.2147 0.0759 -3.4872 28 1 5.2005 3.4349 0.0077 29 1 7.5918 2.2007 0.0119 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330679876.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:16 Heat of formation + Delta-G solvation = -33.996634 kcal Electronic energy + Delta-G solvation = -18735.208358 eV Core-core repulsion = 15559.546672 eV Total energy + Delta-G solvation = -3175.661686 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.64288 -38.06351 -37.94601 -37.64521 -36.24986 -34.26072 -33.85031 -31.30372 -31.03399 -26.86757 -24.70428 -23.35331 -23.08073 -20.53528 -20.31096 -19.22713 -18.51889 -18.03346 -17.34813 -16.73796 -16.18839 -15.62998 -15.27067 -14.78793 -14.71361 -14.62121 -14.57695 -14.07887 -14.04774 -13.75595 -13.61761 -13.12194 -12.72078 -12.62917 -12.57189 -12.54322 -12.16415 -12.01113 -11.87431 -11.56453 -11.24533 -11.15479 -10.05415 -9.82377 -8.51381 -6.09280 -0.40351 -0.15143 0.85350 1.07529 1.55646 1.61851 1.74293 1.80153 2.03527 2.26095 2.59308 2.79839 3.02338 3.31776 3.80745 4.03015 4.34999 4.40937 4.46888 4.68890 4.70340 4.78701 5.00832 5.23648 5.25832 5.27615 5.60083 5.66417 5.72790 5.95928 6.31282 6.60039 7.13198 8.34059 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.007393 C = 0.006761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.523124 B = 3786.576459 C = 4140.491311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.099 3.901 3 N -0.771 5.771 4 C -0.208 4.208 5 H 0.123 0.877 6 C 0.012 3.988 7 N -0.806 5.806 8 Si 0.992 3.008 9 H -0.254 1.254 10 H -0.269 1.269 11 H -0.264 1.264 12 S 2.449 3.551 13 O -1.023 7.023 14 O -0.998 6.998 15 C -0.504 4.504 16 C -0.142 4.142 17 C -0.113 4.113 18 C 0.015 3.985 19 C 0.314 3.686 20 N -0.401 5.401 21 O -0.132 6.132 22 H 0.078 0.922 23 H 0.043 0.957 24 H 0.061 0.939 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.294 0.706 28 H 0.182 0.818 29 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.506 1.663 -4.345 4.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.026 4.026 3 N -0.591 5.591 4 C -0.368 4.368 5 H 0.140 0.860 6 C -0.206 4.206 7 N -0.443 5.443 8 Si 0.813 3.187 9 H -0.177 1.177 10 H -0.194 1.194 11 H -0.189 1.189 12 S 2.550 3.450 13 O -1.013 7.013 14 O -0.988 6.988 15 C -0.627 4.627 16 C -0.162 4.162 17 C -0.135 4.135 18 C -0.039 4.039 19 C -0.001 4.001 20 N -0.079 5.079 21 O -0.025 6.025 22 H 0.096 0.904 23 H 0.062 0.938 24 H 0.080 0.920 25 H 0.117 0.883 26 H 0.078 0.922 27 H 0.105 0.895 28 H 0.199 0.801 29 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 1.604 0.389 -2.820 3.268 hybrid contribution 0.340 0.408 -0.663 0.849 sum 1.944 0.796 -3.483 4.068 Atomic orbital electron populations 1.21879 0.94275 1.02068 1.01759 1.21729 0.95885 0.81860 1.03125 1.55042 1.47540 1.21029 1.35465 1.20720 1.35685 0.94686 0.85752 0.85970 1.26817 0.96259 0.96979 1.00555 1.69955 1.33359 1.16537 1.24485 0.84858 0.78227 0.79219 0.76430 1.17727 1.19424 1.18898 1.17796 0.72806 0.74589 0.79822 1.93238 1.81634 1.70049 1.56357 1.93274 1.84799 1.32546 1.88137 1.39123 1.24237 0.89719 1.09613 1.22078 0.91808 1.01920 1.00404 1.22442 1.00623 0.91375 0.99068 1.17417 0.82704 0.95058 1.08749 1.23397 0.92019 0.91457 0.93198 1.81280 1.10417 1.07255 1.08984 1.84260 1.18308 1.38149 1.61771 0.90371 0.93750 0.92024 0.88303 0.92230 0.89494 0.80084 0.77665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.91 9.96 71.98 0.72 -4.20 15 2 C 0.10 4.07 5.84 86.38 0.50 4.58 15 3 N -0.77 -34.21 2.98 -343.45 -1.02 -35.23 15 4 C -0.21 -8.90 8.67 84.03 0.73 -8.17 15 5 H 0.12 5.18 7.34 -2.91 -0.02 5.16 15 6 C 0.01 0.46 4.63 84.86 0.39 0.85 15 7 N -0.81 -32.78 11.06 21.65 0.24 -32.54 15 8 Si 0.99 30.48 29.61 68.60 2.03 32.51 15 9 H -0.25 -7.73 7.11 99.48 0.71 -7.03 15 10 H -0.27 -8.14 7.11 99.48 0.71 -7.43 15 11 H -0.26 -7.86 7.11 99.48 0.71 -7.16 15 12 S 2.45 115.09 5.78 -56.49 -0.33 114.76 15 13 O -1.02 -53.01 16.66 -127.92 -2.13 -55.14 15 14 O -1.00 -49.60 16.68 -128.00 -2.14 -51.73 15 15 C -0.50 -21.61 7.35 67.09 0.49 -21.12 15 16 C -0.14 -5.11 10.59 22.08 0.23 -4.87 15 17 C -0.11 -3.37 10.84 22.42 0.24 -3.13 15 18 C 0.02 0.53 7.08 23.12 0.16 0.69 15 19 C 0.31 10.15 15.88 88.33 1.40 11.56 15 20 N -0.40 -13.25 18.54 19.00 0.35 -12.90 15 21 O -0.13 -5.61 10.67 -5.76 -0.06 -5.67 15 22 H 0.08 2.27 8.14 -2.39 -0.02 2.25 15 23 H 0.04 1.56 8.14 -2.39 -0.02 1.54 15 24 H 0.06 2.12 7.41 -2.39 -0.02 2.10 15 25 H 0.10 4.14 5.52 -2.39 -0.01 4.13 15 26 H 0.06 2.48 7.03 -2.39 -0.02 2.47 15 27 H 0.29 10.80 8.31 -92.71 -0.77 10.03 15 28 H 0.18 5.83 8.06 -2.91 -0.02 5.80 15 29 H 0.21 4.08 8.06 -2.91 -0.02 4.06 15 Total: -1.00 -56.85 282.16 3.02 -53.83 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.20 Total: 15.92 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.88 Total: -23.81 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -0.43 Total: -80.67 kcal Atomic # 8 Polarization: -108.21 SS G_CDS: -4.33 Total: -112.54 kcal Atomic # 14 Polarization: 30.48 SS G_CDS: 2.03 Total: 32.51 kcal Atomic # 16 Polarization: 115.09 SS G_CDS: -0.33 Total: 114.76 kcal Total: -56.85 3.02 -53.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330679876.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.829 kcal (2) G-P(sol) polarization free energy of solvation -56.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds