Wall clock time and date at job start Mon Mar 30 2020 00:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34757 * 117.00292 * 2 1 4 4 O 1.21503 * 119.99607 * 0.02562 * 3 2 1 5 5 C 1.47390 * 119.99776 * 179.97438 * 3 2 1 6 6 C 1.39774 * 120.19532 * 0.02562 * 5 3 2 7 7 C 1.37874 * 119.88829 * 180.02562 * 6 5 3 8 8 Cl 1.73600 * 119.85750 * 180.02562 * 7 6 5 9 9 C 1.38662 * 120.28185 * 0.02562 * 7 6 5 10 10 C 1.38042 * 120.39010 * 0.26657 * 9 7 6 11 11 C 1.38701 * 120.10748 * 359.43670 * 10 9 7 12 12 O 1.35661 * 120.14661 * 180.27614 * 11 10 9 13 13 C 1.42897 * 116.99755 * 0.30543 * 12 11 10 14 14 C 1.50701 * 109.47051 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99964 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99847 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00062 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 120.00216 * 0.02562 * 16 14 13 19 19 H 1.48491 * 109.47115 * 89.99614 * 18 16 14 20 20 H 1.48502 * 109.46910 * 209.99646 * 18 16 14 21 21 H 1.48502 * 109.46712 * 329.99415 * 18 16 14 22 22 H 1.08998 * 109.47690 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47110 * 300.00126 * 1 2 3 24 24 H 1.09000 * 109.46905 * 59.99881 * 1 2 3 25 25 H 1.07999 * 120.05689 * 0.04079 * 6 5 3 26 26 H 1.08002 * 119.80098 * 179.97438 * 9 7 6 27 27 H 1.07998 * 119.94960 * 179.70247 * 10 9 7 28 28 H 1.09007 * 109.47114 * 299.99417 * 13 12 11 29 29 H 1.08999 * 109.47256 * 59.99503 * 13 12 11 30 30 H 0.96998 * 120.00015 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4021 2.2197 0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.3009 0.1080 0.0006 7 6 5.6773 0.1874 0.0016 8 17 6.6269 -1.2659 0.0010 9 6 6.3064 1.4231 0.0033 10 6 5.5621 2.5856 0.0093 11 6 4.1764 2.5246 0.0021 12 8 3.4442 3.6666 0.0024 13 6 4.1659 4.9000 0.0037 14 6 3.1933 6.0511 0.0032 15 1 2.1304 5.8600 0.0017 16 6 3.6605 7.3483 0.0047 17 7 2.8117 8.3529 0.0038 18 14 5.4991 7.6789 0.0067 19 1 5.9875 7.7677 -1.3928 20 1 5.7709 8.9593 0.7080 21 1 6.2001 6.5726 0.7065 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 3.8147 -0.8564 -0.0005 26 1 7.3851 1.4762 0.0045 27 1 6.0594 3.5442 0.0154 28 1 4.7923 4.9535 0.8941 29 1 4.7934 4.9546 -0.8859 30 1 3.1404 9.2655 0.0046 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339321326.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:18 Heat of formation + Delta-G solvation = -122.771094 kcal Electronic energy + Delta-G solvation = -17964.860826 eV Core-core repulsion = 14751.013133 eV Total energy + Delta-G solvation = -3213.847693 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.85645 -40.63347 -38.76358 -37.42488 -37.16475 -35.01085 -32.90416 -31.37235 -30.08693 -28.61313 -25.45908 -24.94583 -22.84167 -22.12629 -19.77162 -19.00407 -18.45407 -18.04231 -17.47047 -17.04120 -16.66894 -16.43624 -16.16817 -15.61333 -14.83303 -14.62706 -14.50430 -14.16931 -14.09096 -13.52980 -13.26522 -13.12699 -12.92731 -12.69633 -12.53452 -12.03188 -11.89370 -11.80586 -11.69817 -11.62373 -11.35031 -10.90925 -10.35784 -9.24675 -8.43129 -6.55450 -0.47176 0.09948 1.07556 1.31597 1.36553 1.41802 1.46009 1.65512 2.24983 2.31450 2.50526 2.88645 3.55163 3.66721 3.84244 4.04657 4.27121 4.29373 4.32524 4.33994 4.60020 4.65398 4.72564 4.72735 4.98450 5.00494 5.24979 5.30404 5.37372 5.89365 6.48757 6.59981 6.73966 7.07732 8.74187 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.016626 B = 0.006067 C = 0.004459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.707549 B = 4614.287350 C = 6277.546661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.504 3.496 4 O -0.523 6.523 5 C -0.184 4.184 6 C -0.001 4.001 7 C -0.096 4.096 8 Cl -0.049 7.049 9 C -0.014 4.014 10 C -0.218 4.218 11 C 0.177 3.823 12 O -0.302 6.302 13 C 0.172 3.828 14 C -0.556 4.556 15 H 0.025 0.975 16 C 0.017 3.983 17 N -0.939 5.939 18 Si 0.956 3.044 19 H -0.255 1.255 20 H -0.273 1.273 21 H -0.232 1.232 22 H 0.145 0.855 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.172 0.828 26 H 0.176 0.824 27 H 0.155 0.845 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.992 -20.825 0.024 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.271 6.271 3 C 0.350 3.650 4 O -0.413 6.413 5 C -0.186 4.186 6 C -0.020 4.020 7 C -0.123 4.123 8 Cl -0.020 7.020 9 C -0.032 4.032 10 C -0.237 4.237 11 C 0.128 3.872 12 O -0.213 6.213 13 C 0.098 3.902 14 C -0.593 4.593 15 H 0.043 0.957 16 C -0.181 4.181 17 N -0.577 5.577 18 Si 0.775 3.225 19 H -0.179 1.179 20 H -0.197 1.197 21 H -0.155 1.155 22 H 0.163 0.837 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.190 0.810 26 H 0.193 0.807 27 H 0.172 0.828 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.574 -20.421 0.027 22.148 hybrid contribution -0.176 0.915 -0.019 0.932 sum 8.398 -19.506 0.008 21.237 Atomic orbital electron populations 1.23569 0.74496 1.05990 1.02219 1.86491 1.25027 1.31045 1.84496 1.21110 0.89205 0.81733 0.72991 1.90985 1.67118 1.37166 1.46024 1.18403 0.89427 0.92018 1.18734 1.21244 0.91762 0.97631 0.91341 1.20613 0.91425 0.88787 1.11474 1.98367 1.71389 1.35014 1.97268 1.21395 1.02177 0.88716 0.90902 1.21444 0.90968 1.01501 1.09769 1.19775 0.91556 0.86422 0.89459 1.86365 1.36793 1.13433 1.84714 1.20912 0.92821 0.79050 0.97378 1.20970 0.93670 0.90685 1.54017 0.95671 1.25879 1.04978 0.94424 0.92865 1.70028 1.37761 0.99944 1.49950 0.85621 0.77044 0.79583 0.80251 1.17878 1.19748 1.15502 0.83719 0.92545 0.92551 0.81019 0.80658 0.82788 0.94257 0.94416 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 10.57 113.37 1.20 1.86 16 2 O -0.35 -9.98 9.82 -56.67 -0.56 -10.53 16 3 C 0.50 18.65 7.89 70.23 0.55 19.20 16 4 O -0.52 -24.73 14.95 26.83 0.40 -24.33 16 5 C -0.18 -6.16 5.88 -20.02 -0.12 -6.28 16 6 C 0.00 -0.03 9.39 22.55 0.21 0.18 16 7 C -0.10 -2.07 6.31 22.28 0.14 -1.93 16 8 Cl -0.05 -0.86 28.94 -2.72 -0.08 -0.94 16 9 C -0.01 -0.29 9.81 22.32 0.22 -0.07 16 10 C -0.22 -6.36 9.03 22.33 0.20 -6.16 16 11 C 0.18 6.72 6.70 22.86 0.15 6.88 16 12 O -0.30 -14.89 8.19 -68.84 -0.56 -15.45 16 13 C 0.17 8.42 3.56 71.24 0.25 8.67 16 14 C -0.56 -34.06 9.99 25.60 0.26 -33.80 16 15 H 0.02 1.79 8.06 -2.91 -0.02 1.77 16 16 C 0.02 1.01 5.47 84.65 0.46 1.47 16 17 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 18 Si 0.96 41.00 27.47 68.60 1.88 42.88 16 19 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.23 -8.68 6.54 99.48 0.65 -8.03 16 22 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 23 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.17 3.32 7.61 -2.91 -0.02 3.30 16 26 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 27 H 0.15 4.26 6.30 -2.91 -0.02 4.24 16 28 H 0.04 1.77 6.71 -2.38 -0.02 1.76 16 29 H 0.04 1.68 7.10 -2.39 -0.02 1.66 16 30 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -76.65 285.23 6.03 -70.61 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.12 Total: 6.34 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 3.53 Total: -9.97 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.72 Total: -50.32 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.88 Total: 42.88 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -0.08 Total: -0.94 kcal Total: -76.65 6.03 -70.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339321326.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.158 kcal (2) G-P(sol) polarization free energy of solvation -76.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds