Wall clock time and date at job start Mon Mar 30 2020 00:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99953 * 2 1 4 4 O 1.20819 * 120.00175 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99652 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46933 * 179.97438 * 5 3 2 7 7 C 1.36890 * 120.00018 * 264.71401 * 6 5 3 8 8 H 1.07996 * 120.00149 * 128.89045 * 7 6 5 9 9 C 1.39012 * 119.99913 * 308.89326 * 7 6 5 10 10 N 1.31396 * 119.99744 * 3.84126 * 9 7 6 11 11 Si 1.86793 * 119.99978 * 183.84489 * 9 7 6 12 12 H 1.48506 * 109.47374 * 89.99746 * 11 9 7 13 13 H 1.48502 * 109.47338 * 210.00184 * 11 9 7 14 14 H 1.48501 * 109.47099 * 329.99938 * 11 9 7 15 15 C 1.34773 * 119.99993 * 84.71767 * 6 5 3 16 16 O 1.21735 * 120.00088 * 4.17873 * 15 6 5 17 17 C 1.46561 * 120.00264 * 184.18328 * 15 6 5 18 18 C 1.36775 * 126.18235 * 173.16087 * 17 15 6 19 19 N 1.30945 * 113.92402 * 180.02562 * 18 17 15 20 20 C 1.29378 * 117.46253 * 0.02562 * 19 18 17 21 21 S 1.70919 * 110.59817 * 359.97438 * 20 19 18 22 22 H 1.08994 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47157 * 300.00297 * 1 2 3 24 24 H 1.09004 * 109.46744 * 60.00287 * 1 2 3 25 25 H 1.09004 * 109.47249 * 59.99848 * 5 3 2 26 26 H 1.09004 * 109.47154 * 299.99913 * 5 3 2 27 27 H 0.97006 * 120.00053 * 179.97438 * 10 9 7 28 28 H 1.07995 * 123.04000 * 0.03893 * 18 17 15 29 29 H 1.08000 * 124.70021 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.2811 3.3042 -1.1809 8 1 3.8222 4.2516 -1.4221 9 6 5.1757 2.7190 -2.0695 10 7 5.6760 1.5317 -1.8116 11 14 5.6666 3.6205 -3.6301 12 1 6.8641 4.4572 -3.3627 13 1 5.9800 2.6334 -4.6943 14 1 4.5459 4.4879 -4.0740 15 6 4.0693 3.3570 1.1617 16 8 3.8774 2.7822 2.2174 17 6 4.3955 4.7859 1.1541 18 6 4.3886 5.6214 2.2369 19 7 4.7199 6.8568 1.9565 20 6 5.0055 7.1332 0.7253 21 16 4.8664 5.7379 -0.2520 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9565 0.7804 -0.8892 26 1 3.9558 0.7808 0.8909 27 1 6.3000 1.1231 -2.4318 28 1 4.1333 5.2920 3.2332 29 1 5.2929 8.1099 0.3651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340562899.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:33 Heat of formation + Delta-G solvation = -65.981011 kcal Electronic energy + Delta-G solvation = -18705.841649 eV Core-core repulsion = 15528.793016 eV Total energy + Delta-G solvation = -3177.048633 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.90614 -39.00644 -38.07494 -35.81089 -34.96016 -31.96521 -30.17487 -28.50028 -26.60493 -25.63435 -24.40358 -21.45966 -20.02406 -19.29913 -18.32812 -17.11926 -16.94138 -15.99503 -15.75771 -15.45173 -15.04073 -14.63941 -14.17089 -13.79423 -13.27420 -13.22087 -12.96182 -12.76545 -12.55769 -11.88093 -11.58386 -11.49924 -11.42677 -11.00290 -10.67944 -10.55820 -10.29968 -9.84754 -9.65088 -9.02821 -8.76080 -8.61612 -8.28055 -7.75305 -6.79599 -4.68931 1.08227 2.14499 2.59932 2.93814 2.98933 3.00693 3.04787 3.13476 3.38381 3.79717 4.20409 4.47530 4.66223 4.98419 5.40858 5.47408 5.56259 5.82559 5.85317 5.91035 6.10272 6.29939 6.64714 6.81093 6.94586 7.02985 7.54284 7.88939 8.34282 8.48555 8.60986 9.02005 9.47641 10.21628 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.009628 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.129724 B = 2907.416090 C = 4196.309233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.445 3.555 4 O -0.507 6.507 5 C 0.128 3.872 6 N -0.423 5.423 7 C -0.343 4.343 8 H 0.101 0.899 9 C 0.064 3.936 10 N -0.849 5.849 11 Si 0.910 3.090 12 H -0.262 1.262 13 H -0.274 1.274 14 H -0.258 1.258 15 C 0.566 3.434 16 O -0.582 6.582 17 C -0.245 4.245 18 C 0.071 3.929 19 N -0.488 5.488 20 C -0.079 4.079 21 S 0.262 5.738 22 H 0.093 0.907 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.150 0.850 26 H 0.102 0.898 27 H 0.282 0.718 28 H 0.174 0.826 29 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 0.811 -2.750 3.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.287 3.713 4 O -0.393 6.393 5 C 0.003 3.997 6 N -0.142 5.142 7 C -0.476 4.476 8 H 0.117 0.883 9 C -0.147 4.147 10 N -0.482 5.482 11 Si 0.733 3.267 12 H -0.187 1.187 13 H -0.199 1.199 14 H -0.182 1.182 15 C 0.355 3.645 16 O -0.467 6.467 17 C -0.370 4.370 18 C -0.088 4.088 19 N -0.203 5.203 20 C -0.370 4.370 21 S 0.522 5.478 22 H 0.112 0.888 23 H 0.075 0.925 24 H 0.075 0.925 25 H 0.167 0.833 26 H 0.120 0.880 27 H 0.093 0.907 28 H 0.191 0.809 29 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.965 1.035 -3.020 3.749 hybrid contribution -0.263 0.169 0.037 0.315 sum -2.228 1.205 -2.982 3.913 Atomic orbital electron populations 1.23102 0.78012 1.02679 1.02013 1.86546 1.22267 1.34698 1.84874 1.25344 0.93634 0.80900 0.71471 1.90584 1.67096 1.36455 1.45199 1.21146 0.83971 0.87139 1.07449 1.42749 1.57412 1.08823 1.05235 1.19384 1.25495 1.05834 0.96910 0.88275 1.25699 0.93648 0.95586 0.99769 1.69619 1.27530 1.13835 1.37228 0.86136 0.80296 0.79991 0.80238 1.18690 1.19888 1.18216 1.17129 0.78981 0.84383 0.84033 1.90691 1.55659 1.69162 1.31164 1.25935 1.14044 0.99947 0.97099 1.22246 1.00071 0.86872 0.99622 1.66231 1.14660 1.19657 1.19720 1.29385 1.04747 1.07476 0.95427 1.84975 1.56844 0.96511 1.09467 0.88838 0.92498 0.92465 0.83269 0.87995 0.90713 0.80870 0.80150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.56 101.05 1.07 1.59 15 2 O -0.37 -6.90 10.57 -39.24 -0.41 -7.32 15 3 C 0.44 9.86 7.99 36.01 0.29 10.15 15 4 O -0.51 -12.50 16.06 -18.74 -0.30 -12.80 15 5 C 0.13 2.93 5.47 -5.19 -0.03 2.90 15 6 N -0.42 -10.41 2.02 -117.62 -0.24 -10.64 15 7 C -0.34 -8.11 6.83 -15.01 -0.10 -8.21 15 8 H 0.10 2.31 5.45 -34.02 -0.19 2.12 15 9 C 0.06 1.44 5.34 -17.45 -0.09 1.35 15 10 N -0.85 -19.76 11.20 55.50 0.62 -19.14 15 11 Si 0.91 17.29 29.55 -169.99 -5.02 12.26 15 12 H -0.26 -4.84 7.11 56.52 0.40 -4.44 15 13 H -0.27 -5.15 7.11 56.52 0.40 -4.75 15 14 H -0.26 -4.80 7.11 56.52 0.40 -4.39 15 15 C 0.57 14.23 7.42 -12.91 -0.10 14.13 15 16 O -0.58 -15.56 16.52 5.16 0.09 -15.47 15 17 C -0.25 -5.51 6.35 -36.76 -0.23 -5.74 15 18 C 0.07 1.48 11.17 -18.46 -0.21 1.27 15 19 N -0.49 -9.59 10.50 -15.13 -0.16 -9.75 15 20 C -0.08 -1.35 12.21 51.73 0.63 -0.72 15 21 S 0.26 4.96 18.62 -107.50 -2.00 2.96 15 22 H 0.09 1.00 8.14 -51.93 -0.42 0.57 15 23 H 0.06 0.83 8.13 -51.93 -0.42 0.41 15 24 H 0.06 0.82 8.13 -51.93 -0.42 0.39 15 25 H 0.15 3.41 5.76 -51.93 -0.30 3.11 15 26 H 0.10 2.29 7.53 -51.93 -0.39 1.89 15 27 H 0.28 6.11 8.31 -40.82 -0.34 5.77 15 28 H 0.17 3.43 8.06 -52.49 -0.42 3.00 15 29 H 0.18 2.38 8.06 -52.49 -0.42 1.95 15 LS Contribution 277.25 15.07 4.18 4.18 Total: -1.00 -29.22 277.25 -4.15 -33.37 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.12 Total: 5.64 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 1.23 Total: 16.72 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.23 Total: -39.54 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.63 Total: -35.59 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.02 Total: 12.26 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -2.00 Total: 2.96 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.22 -4.15 -33.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340562899.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.615 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds