Wall clock time and date at job start Mon Mar 30 2020 00:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34224 * 116.99953 * 2 1 4 4 O 1.20819 * 120.00175 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99652 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.46933 * 179.97438 * 5 3 2 7 7 C 1.36890 * 120.00018 * 264.71401 * 6 5 3 8 8 H 1.07996 * 120.00149 * 128.89045 * 7 6 5 9 9 C 1.39012 * 119.99913 * 308.89326 * 7 6 5 10 10 N 1.31396 * 119.99744 * 3.84126 * 9 7 6 11 11 Si 1.86793 * 119.99978 * 183.84489 * 9 7 6 12 12 H 1.48506 * 109.47374 * 89.99746 * 11 9 7 13 13 H 1.48502 * 109.47338 * 210.00184 * 11 9 7 14 14 H 1.48501 * 109.47099 * 329.99938 * 11 9 7 15 15 C 1.34773 * 119.99993 * 84.71767 * 6 5 3 16 16 O 1.21735 * 120.00088 * 4.17873 * 15 6 5 17 17 C 1.46561 * 120.00264 * 184.18328 * 15 6 5 18 18 C 1.36775 * 126.18235 * 173.16087 * 17 15 6 19 19 N 1.30945 * 113.92402 * 180.02562 * 18 17 15 20 20 C 1.29378 * 117.46253 * 0.02562 * 19 18 17 21 21 S 1.70919 * 110.59817 * 359.97438 * 20 19 18 22 22 H 1.08994 * 109.47187 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47157 * 300.00297 * 1 2 3 24 24 H 1.09004 * 109.46744 * 60.00287 * 1 2 3 25 25 H 1.09004 * 109.47249 * 59.99848 * 5 3 2 26 26 H 1.09004 * 109.47154 * 299.99913 * 5 3 2 27 27 H 0.97006 * 120.00053 * 179.97438 * 10 9 7 28 28 H 1.07995 * 123.04000 * 0.03893 * 18 17 15 29 29 H 1.08000 * 124.70021 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2747 0.0006 6 7 3.9818 2.6796 -0.0002 7 6 4.2811 3.3042 -1.1809 8 1 3.8222 4.2516 -1.4221 9 6 5.1757 2.7190 -2.0695 10 7 5.6760 1.5317 -1.8116 11 14 5.6666 3.6205 -3.6301 12 1 6.8641 4.4572 -3.3627 13 1 5.9800 2.6334 -4.6943 14 1 4.5459 4.4879 -4.0740 15 6 4.0693 3.3570 1.1617 16 8 3.8774 2.7822 2.2174 17 6 4.3955 4.7859 1.1541 18 6 4.3886 5.6214 2.2369 19 7 4.7199 6.8568 1.9565 20 6 5.0055 7.1332 0.7253 21 16 4.8664 5.7379 -0.2520 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 3.9565 0.7804 -0.8892 26 1 3.9558 0.7808 0.8909 27 1 6.3000 1.1231 -2.4318 28 1 4.1333 5.2920 3.2332 29 1 5.2929 8.1099 0.3651 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340562899.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:32 Heat of formation + Delta-G solvation = -85.041451 kcal Electronic energy + Delta-G solvation = -18706.668171 eV Core-core repulsion = 15528.793016 eV Total energy + Delta-G solvation = -3177.875156 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.63299 -40.66507 -39.75528 -37.50874 -36.77631 -33.74579 -31.84361 -30.08585 -28.03656 -27.32912 -26.03058 -23.13329 -21.73414 -20.96846 -19.95399 -18.82066 -18.65195 -17.63446 -17.37813 -17.09935 -16.79802 -16.27675 -15.85004 -15.38655 -14.83132 -14.69710 -14.53706 -14.39637 -14.20462 -13.50802 -13.22729 -13.10854 -12.93534 -12.66866 -12.24689 -12.05151 -11.80091 -11.63038 -11.37741 -10.83369 -10.35226 -10.21270 -9.88021 -9.49752 -8.50953 -6.48632 -0.48577 0.59770 1.07881 1.22342 1.45197 1.46636 1.52670 1.59637 1.82497 2.21527 2.45482 2.75327 2.93693 3.55452 4.02097 4.15985 4.28762 4.30838 4.40977 4.45450 4.57160 4.64154 4.83324 5.25204 5.26791 5.31806 5.74176 6.13347 6.77454 6.80507 6.84699 7.19450 7.66769 8.52278 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.015363 B = 0.009628 C = 0.006671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.129724 B = 2907.416090 C = 4196.309233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.365 6.365 3 C 0.450 3.550 4 O -0.537 6.537 5 C 0.126 3.874 6 N -0.430 5.430 7 C -0.365 4.365 8 H 0.102 0.898 9 C 0.033 3.967 10 N -0.875 5.875 11 Si 0.961 3.039 12 H -0.250 1.250 13 H -0.271 1.271 14 H -0.250 1.250 15 C 0.549 3.451 16 O -0.617 6.617 17 C -0.293 4.293 18 C 0.079 3.921 19 N -0.504 5.504 20 C -0.046 4.046 21 S 0.284 5.716 22 H 0.139 0.861 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.148 0.852 26 H 0.097 0.903 27 H 0.287 0.713 28 H 0.174 0.826 29 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 2.187 -4.156 5.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.281 6.281 3 C 0.293 3.707 4 O -0.426 6.426 5 C 0.001 3.999 6 N -0.147 5.147 7 C -0.497 4.497 8 H 0.119 0.881 9 C -0.176 4.176 10 N -0.508 5.508 11 Si 0.781 3.219 12 H -0.174 1.174 13 H -0.195 1.195 14 H -0.173 1.173 15 C 0.340 3.660 16 O -0.505 6.505 17 C -0.418 4.418 18 C -0.081 4.081 19 N -0.218 5.218 20 C -0.338 4.338 21 S 0.544 5.456 22 H 0.157 0.843 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.166 0.834 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.191 0.809 29 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.769 2.368 -4.453 5.344 hybrid contribution -0.372 -0.243 0.493 0.663 sum -2.141 2.125 -3.960 4.978 Atomic orbital electron populations 1.23531 0.75158 1.05744 1.02067 1.86511 1.24937 1.32609 1.84055 1.25076 0.93389 0.81370 0.70827 1.90558 1.67645 1.37591 1.46801 1.21113 0.84899 0.86920 1.07012 1.42949 1.57066 1.09168 1.05544 1.19632 1.26555 1.06598 0.96904 0.88088 1.26425 0.93038 0.95993 1.02099 1.69686 1.27893 1.14864 1.38368 0.85376 0.80550 0.79259 0.76728 1.17362 1.19541 1.17320 1.17591 0.78896 0.85696 0.83805 1.90631 1.57511 1.70287 1.32106 1.25835 1.17105 0.99367 0.99492 1.22373 0.98937 0.87268 0.99522 1.66331 1.16035 1.18706 1.20777 1.30066 1.01177 1.08572 0.93994 1.84650 1.56452 0.96224 1.08248 0.84264 0.92730 0.92205 0.83446 0.88538 0.90232 0.80872 0.75242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.56 113.37 1.20 1.97 15 2 O -0.37 -13.64 10.57 -51.36 -0.54 -14.18 15 3 C 0.45 20.38 7.99 71.24 0.57 20.95 15 4 O -0.54 -27.03 16.06 21.99 0.35 -26.67 15 5 C 0.13 5.93 5.47 85.63 0.47 6.40 15 6 N -0.43 -21.66 2.02 -644.23 -1.30 -22.96 15 7 C -0.37 -17.33 6.83 84.09 0.57 -16.76 15 8 H 0.10 4.67 5.45 -14.65 -0.08 4.59 15 9 C 0.03 1.46 5.34 84.94 0.45 1.92 15 10 N -0.87 -40.87 11.20 21.68 0.24 -40.62 15 11 Si 0.96 33.90 29.55 68.60 2.03 35.93 15 12 H -0.25 -8.28 7.11 99.48 0.71 -7.57 15 13 H -0.27 -9.36 7.11 99.48 0.71 -8.66 15 14 H -0.25 -8.42 7.11 99.48 0.71 -7.72 15 15 C 0.55 28.53 7.42 86.41 0.64 29.18 15 16 O -0.62 -34.48 16.52 -4.46 -0.07 -34.56 15 17 C -0.29 -13.25 6.35 24.10 0.15 -13.09 15 18 C 0.08 3.27 11.17 84.48 0.94 4.21 15 19 N -0.50 -18.70 10.50 -201.77 -2.12 -20.82 15 20 C -0.05 -1.43 12.21 130.60 1.59 0.17 15 21 S 0.28 10.24 18.62 -56.49 -1.05 9.19 15 22 H 0.14 2.56 8.14 -2.39 -0.02 2.54 15 23 H 0.05 1.55 8.13 -2.39 -0.02 1.53 15 24 H 0.06 1.64 8.13 -2.38 -0.02 1.62 15 25 H 0.15 6.95 5.76 -2.38 -0.01 6.93 15 26 H 0.10 4.56 7.53 -2.39 -0.02 4.54 15 27 H 0.29 12.40 8.31 -92.70 -0.77 11.63 15 28 H 0.17 6.98 8.06 -2.91 -0.02 6.96 15 29 H 0.23 4.71 8.06 -2.91 -0.02 4.69 15 Total: -1.00 -63.94 277.25 5.26 -58.67 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: 1.13 Total: 21.07 kcal Atomic # 6 Polarization: 28.35 SS G_CDS: 6.59 Total: 34.95 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -3.17 Total: -84.40 kcal Atomic # 8 Polarization: -75.15 SS G_CDS: -0.26 Total: -75.41 kcal Atomic # 14 Polarization: 33.90 SS G_CDS: 2.03 Total: 35.93 kcal Atomic # 16 Polarization: 10.24 SS G_CDS: -1.05 Total: 9.19 kcal Total: -63.94 5.26 -58.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340562899.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.370 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds