Wall clock time and date at job start Mon Mar 30 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42097 * 108.57623 * 2 1 4 4 O 1.42098 * 108.57937 * 228.97001 * 2 1 3 5 5 C 1.81399 * 101.91883 * 114.48556 * 2 1 3 6 6 C 1.50708 * 109.47091 * 180.02562 * 5 2 1 7 7 C 1.38163 * 120.02715 * 270.02510 * 6 5 2 8 8 C 1.38243 * 120.05438 * 179.97438 * 7 6 5 9 9 C 1.38289 * 120.11362 * 359.97438 * 8 7 6 10 10 C 1.38125 * 120.05159 * 0.02562 * 9 8 7 11 11 C 1.38708 * 120.02785 * 90.00021 * 6 5 2 12 12 O 1.35899 * 120.05461 * 359.97438 * 11 6 5 13 13 C 1.42903 * 116.99930 * 180.02562 * 12 11 6 14 14 C 1.50697 * 109.47103 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00571 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00035 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99906 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46886 * 60.00072 * 18 16 14 20 20 H 1.48499 * 109.46949 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46833 * 299.99950 * 18 16 14 22 22 H 1.08997 * 109.47040 * 305.51066 * 1 2 3 23 23 H 1.08991 * 109.46790 * 65.51396 * 1 2 3 24 24 H 1.09001 * 109.46530 * 185.51503 * 1 2 3 25 25 H 1.08999 * 109.47342 * 60.00262 * 5 2 1 26 26 H 1.09000 * 109.47294 * 300.00178 * 5 2 1 27 27 H 1.08001 * 119.97024 * 359.97438 * 7 6 5 28 28 H 1.08004 * 119.94070 * 180.02562 * 8 7 6 29 29 H 1.07993 * 119.96940 * 180.28495 * 9 8 7 30 30 H 1.08000 * 120.02364 * 180.02562 * 10 9 8 31 31 H 1.08998 * 109.47294 * 300.00489 * 13 12 11 32 32 H 1.08995 * 109.47056 * 60.00501 * 13 12 11 33 33 H 0.97004 * 120.00004 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6827 -0.8171 1.7958 7 6 4.3687 -1.9429 1.3822 8 6 5.7392 -2.0180 1.5471 9 6 6.4271 -0.9671 2.1255 10 6 5.7459 0.1605 2.5406 11 6 4.3703 0.2382 2.3768 12 8 3.6979 1.3470 2.7834 13 6 4.4708 2.3946 3.3727 14 6 3.5619 3.5329 3.7590 15 1 2.5002 3.4632 3.5736 16 6 4.0856 4.6630 4.3503 17 7 5.3783 4.7478 4.5767 18 14 2.9589 6.0738 4.8299 19 1 1.9508 5.5916 5.8078 20 1 3.7621 7.1625 5.4421 21 1 2.2684 6.5889 3.6202 22 1 -0.3633 0.5969 0.8365 23 1 -0.3632 0.4259 -0.9352 24 1 -0.3632 -1.0230 0.0988 25 1 1.7611 -1.7369 1.6665 26 1 1.7610 -0.1170 2.4043 27 1 3.8337 -2.7648 0.9298 28 1 6.2737 -2.8988 1.2228 29 1 7.4983 -1.0263 2.2490 30 1 6.2836 0.9812 2.9919 31 1 4.9773 2.0170 4.2609 32 1 5.2110 2.7479 2.6549 33 1 5.7468 5.5430 4.9923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349108687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:10 Heat of formation + Delta-G solvation = -86.524098 kcal Electronic energy + Delta-G solvation = -18652.768967 eV Core-core repulsion = 15578.369862 eV Total energy + Delta-G solvation = -3074.399105 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.61975 -36.79472 -36.62534 -35.70894 -33.06103 -32.66201 -29.70919 -29.58969 -27.75129 -26.72490 -23.53007 -21.33285 -21.20649 -18.65625 -17.44423 -16.54626 -16.49103 -16.04935 -15.90294 -15.21586 -15.02933 -14.59654 -14.43907 -13.99476 -13.35923 -13.19000 -13.00158 -12.89696 -12.44385 -12.23367 -11.86634 -11.76933 -11.67457 -11.20668 -11.03621 -10.96358 -10.93854 -10.77600 -10.50067 -10.18471 -10.16848 -9.29452 -8.58388 -8.53186 -7.54554 -6.23114 -4.26155 0.09497 1.63340 1.87340 2.94102 3.26903 3.30062 3.33230 3.81409 4.10683 4.12327 4.17728 4.46968 4.70548 4.76972 4.80870 5.11777 5.14374 5.32159 5.39419 5.49270 5.61097 5.72972 5.78883 6.08511 6.29524 6.63894 6.67172 6.82778 6.91275 7.15845 7.19879 7.68476 7.95695 8.41277 8.84056 9.38236 10.88315 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.006602 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.580057 B = 4240.199805 C = 5530.534593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 2.407 3.593 3 O -0.914 6.914 4 O -0.946 6.946 5 C -0.541 4.541 6 C -0.150 4.150 7 C -0.066 4.066 8 C -0.180 4.180 9 C -0.068 4.068 10 C -0.214 4.214 11 C 0.173 3.827 12 O -0.306 6.306 13 C 0.193 3.807 14 C -0.521 4.521 15 H 0.071 0.929 16 C 0.060 3.940 17 N -0.896 5.896 18 Si 0.913 3.087 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.272 1.272 22 H 0.129 0.871 23 H 0.125 0.875 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.146 0.854 27 H 0.128 0.872 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.022 0.978 32 H 0.025 0.975 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 -13.000 -5.561 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.811 4.811 2 S 2.589 3.411 3 O -0.911 6.911 4 O -0.943 6.943 5 C -0.669 4.669 6 C -0.152 4.152 7 C -0.085 4.085 8 C -0.198 4.198 9 C -0.086 4.086 10 C -0.232 4.232 11 C 0.123 3.877 12 O -0.217 6.217 13 C 0.120 3.880 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.739 3.261 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.197 1.197 22 H 0.148 0.852 23 H 0.144 0.856 24 H 0.142 0.858 25 H 0.150 0.850 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.140 0.860 30 H 0.156 0.844 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.426 -12.481 -6.157 14.937 hybrid contribution -0.813 0.565 1.020 1.421 sum -6.239 -11.916 -5.137 14.398 Atomic orbital electron populations 1.30351 1.28189 1.10958 1.11634 1.08515 0.78005 0.76505 0.78076 1.93680 1.78003 1.33528 1.85915 1.93550 1.79019 1.67457 1.54301 1.28983 1.01377 1.13369 1.23177 1.18130 0.91512 0.95843 1.09749 1.20817 0.94590 0.95988 0.97094 1.20859 0.94063 0.99869 1.05054 1.21018 0.99598 0.92617 0.95409 1.21497 0.93692 1.00914 1.07128 1.19076 0.90805 0.87472 0.90381 1.86104 1.38643 1.24361 1.72642 1.20704 0.92283 0.82650 0.92337 1.20912 0.94979 0.99612 1.40413 0.91085 1.24921 0.95507 0.98443 0.95321 1.69938 1.11309 1.29411 1.42723 0.86314 0.80098 0.80717 0.78926 1.19922 1.21003 1.19748 0.85196 0.85638 0.85834 0.85009 0.83629 0.85450 0.86104 0.85981 0.84359 0.95990 0.95724 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.94 10.62 101.05 1.07 -4.86 16 2 S 2.41 33.81 5.34 -107.50 -0.57 33.24 16 3 O -0.91 -17.96 18.10 -57.83 -1.05 -19.00 16 4 O -0.95 -15.27 18.10 -57.83 -1.05 -16.31 16 5 C -0.54 -7.17 5.71 36.01 0.21 -6.97 16 6 C -0.15 -2.56 5.15 -104.47 -0.54 -3.10 16 7 C -0.07 -0.98 9.70 -39.61 -0.38 -1.36 16 8 C -0.18 -2.57 10.04 -39.56 -0.40 -2.97 16 9 C -0.07 -1.06 10.04 -39.60 -0.40 -1.46 16 10 C -0.21 -4.09 9.04 -39.43 -0.36 -4.45 16 11 C 0.17 3.56 6.66 -39.22 -0.26 3.30 16 12 O -0.31 -7.29 9.17 -19.42 -0.18 -7.47 16 13 C 0.19 5.14 4.49 36.00 0.16 5.30 16 14 C -0.52 -14.91 9.43 -34.44 -0.32 -15.24 16 15 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -26.03 13.29 55.43 0.74 -25.29 16 18 Si 0.91 21.37 29.54 -169.99 -5.02 16.35 16 19 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 23 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 24 H 0.12 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.13 1.14 8.09 -51.92 -0.42 0.72 16 26 H 0.15 1.90 7.53 -51.92 -0.39 1.51 16 27 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 29 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.14 2.75 6.30 -52.49 -0.33 2.42 16 31 H 0.02 0.60 7.66 -51.93 -0.40 0.20 16 32 H 0.02 0.69 7.66 -51.93 -0.40 0.30 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 303.16 15.07 4.57 4.57 Total: -1.00 -35.75 303.16 -7.90 -43.65 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -4.02 Total: 0.49 kcal Atomic # 6 Polarization: -28.89 SS G_CDS: -1.32 Total: -30.21 kcal Atomic # 7 Polarization: -26.03 SS G_CDS: 0.74 Total: -25.29 kcal Atomic # 8 Polarization: -40.52 SS G_CDS: -2.27 Total: -42.79 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 33.81 SS G_CDS: -0.57 Total: 33.24 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.75 -7.90 -43.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349108687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.879 kcal (2) G-P(sol) polarization free energy of solvation -35.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds