Wall clock time and date at job start Mon Mar 30 2020 01:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 O 1.42097 * 108.57623 * 2 1 4 4 O 1.42098 * 108.57937 * 228.97001 * 2 1 3 5 5 C 1.81399 * 101.91883 * 114.48556 * 2 1 3 6 6 C 1.50708 * 109.47091 * 180.02562 * 5 2 1 7 7 C 1.38163 * 120.02715 * 270.02510 * 6 5 2 8 8 C 1.38243 * 120.05438 * 179.97438 * 7 6 5 9 9 C 1.38289 * 120.11362 * 359.97438 * 8 7 6 10 10 C 1.38125 * 120.05159 * 0.02562 * 9 8 7 11 11 C 1.38708 * 120.02785 * 90.00021 * 6 5 2 12 12 O 1.35899 * 120.05461 * 359.97438 * 11 6 5 13 13 C 1.42903 * 116.99930 * 180.02562 * 12 11 6 14 14 C 1.50697 * 109.47103 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00571 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00035 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99906 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00218 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.46886 * 60.00072 * 18 16 14 20 20 H 1.48499 * 109.46949 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46833 * 299.99950 * 18 16 14 22 22 H 1.08997 * 109.47040 * 305.51066 * 1 2 3 23 23 H 1.08991 * 109.46790 * 65.51396 * 1 2 3 24 24 H 1.09001 * 109.46530 * 185.51503 * 1 2 3 25 25 H 1.08999 * 109.47342 * 60.00262 * 5 2 1 26 26 H 1.09000 * 109.47294 * 300.00178 * 5 2 1 27 27 H 1.08001 * 119.97024 * 359.97438 * 7 6 5 28 28 H 1.08004 * 119.94070 * 180.02562 * 8 7 6 29 29 H 1.07993 * 119.96940 * 180.28495 * 9 8 7 30 30 H 1.08000 * 120.02364 * 180.02562 * 10 9 8 31 31 H 1.08998 * 109.47294 * 300.00489 * 13 12 11 32 32 H 1.08995 * 109.47056 * 60.00501 * 13 12 11 33 33 H 0.97004 * 120.00004 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.6827 -0.8171 1.7958 7 6 4.3687 -1.9429 1.3822 8 6 5.7392 -2.0180 1.5471 9 6 6.4271 -0.9671 2.1255 10 6 5.7459 0.1605 2.5406 11 6 4.3703 0.2382 2.3768 12 8 3.6979 1.3470 2.7834 13 6 4.4708 2.3946 3.3727 14 6 3.5619 3.5329 3.7590 15 1 2.5002 3.4632 3.5736 16 6 4.0856 4.6630 4.3503 17 7 5.3783 4.7478 4.5767 18 14 2.9589 6.0738 4.8299 19 1 1.9508 5.5916 5.8078 20 1 3.7621 7.1625 5.4421 21 1 2.2684 6.5889 3.6202 22 1 -0.3633 0.5969 0.8365 23 1 -0.3632 0.4259 -0.9352 24 1 -0.3632 -1.0230 0.0988 25 1 1.7611 -1.7369 1.6665 26 1 1.7610 -0.1170 2.4043 27 1 3.8337 -2.7648 0.9298 28 1 6.2737 -2.8988 1.2228 29 1 7.4983 -1.0263 2.2490 30 1 6.2836 0.9812 2.9919 31 1 4.9773 2.0170 4.2609 32 1 5.2110 2.7479 2.6549 33 1 5.7468 5.5430 4.9923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349108687.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:10 Heat of formation + Delta-G solvation = -113.593595 kcal Electronic energy + Delta-G solvation = -18653.942788 eV Core-core repulsion = 15578.369862 eV Total energy + Delta-G solvation = -3075.572926 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.07490 -38.31851 -37.87766 -36.92425 -35.07725 -34.01082 -31.11813 -30.44825 -29.65556 -27.99269 -25.45962 -22.77666 -22.63777 -19.78814 -19.09867 -18.46785 -17.59703 -17.34508 -17.16563 -16.73907 -16.42488 -16.30580 -16.08031 -15.33441 -14.67668 -14.35738 -13.91674 -13.88551 -13.75495 -13.70946 -13.48493 -13.06438 -13.00425 -12.90928 -12.84413 -12.36409 -12.34736 -12.12012 -11.95965 -11.92230 -11.61272 -11.35364 -10.71253 -9.81166 -9.02452 -8.39208 -6.53023 -0.95038 0.35020 0.51814 1.37673 1.43643 1.51538 1.94019 2.26287 2.69335 2.72274 2.87209 2.95679 3.17813 3.56638 3.82552 4.08489 4.12306 4.16054 4.30071 4.34739 4.53637 4.56687 4.69999 4.83818 4.95985 4.96470 5.08266 5.37475 5.40566 5.51354 5.53601 5.82567 5.92813 6.49227 6.75448 7.18040 8.73296 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.017778 B = 0.006602 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.580057 B = 4240.199805 C = 5530.534593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.632 4.632 2 S 2.396 3.604 3 O -0.989 6.989 4 O -0.975 6.975 5 C -0.543 4.543 6 C -0.155 4.155 7 C -0.069 4.069 8 C -0.165 4.165 9 C -0.071 4.071 10 C -0.240 4.240 11 C 0.118 3.882 12 O -0.321 6.321 13 C 0.213 3.787 14 C -0.554 4.554 15 H 0.070 0.930 16 C 0.009 3.991 17 N -0.928 5.928 18 Si 0.987 3.013 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.267 1.267 22 H 0.145 0.855 23 H 0.139 0.861 24 H 0.166 0.834 25 H 0.187 0.813 26 H 0.143 0.857 27 H 0.170 0.830 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.111 0.889 31 H 0.004 0.996 32 H -0.007 1.007 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.091 -15.215 -5.972 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.785 4.785 2 S 2.585 3.415 3 O -0.986 6.986 4 O -0.972 6.972 5 C -0.671 4.671 6 C -0.157 4.157 7 C -0.087 4.087 8 C -0.182 4.182 9 C -0.090 4.090 10 C -0.259 4.259 11 C 0.070 3.930 12 O -0.234 6.234 13 C 0.139 3.861 14 C -0.592 4.592 15 H 0.088 0.912 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.809 3.191 19 H -0.183 1.183 20 H -0.198 1.198 21 H -0.191 1.191 22 H 0.164 0.836 23 H 0.158 0.842 24 H 0.184 0.816 25 H 0.204 0.796 26 H 0.161 0.839 27 H 0.187 0.813 28 H 0.183 0.817 29 H 0.168 0.832 30 H 0.129 0.871 31 H 0.021 0.979 32 H 0.011 0.989 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.583 -14.725 -6.582 17.823 hybrid contribution -0.130 1.033 1.070 1.492 sum -7.713 -13.693 -5.512 16.654 Atomic orbital electron populations 1.30064 1.20821 1.14393 1.13226 1.08313 0.80766 0.74662 0.77769 1.93604 1.81166 1.37018 1.86829 1.93504 1.81267 1.67235 1.55179 1.29059 0.99266 1.16492 1.22297 1.18637 0.93802 0.95094 1.08162 1.21419 0.95211 0.96060 0.96030 1.21443 0.94233 1.00244 1.02327 1.21362 1.01096 0.91680 0.94847 1.21523 0.93749 1.01951 1.08706 1.19605 0.91868 0.87851 0.93628 1.86012 1.38434 1.25102 1.73885 1.20162 0.91604 0.83496 0.90798 1.21297 0.95261 1.01007 1.41598 0.91171 1.25996 0.97249 1.01163 0.94599 1.70060 1.13239 1.30443 1.42928 0.85181 0.78134 0.76867 0.78956 1.18301 1.19794 1.19140 0.83629 0.84235 0.81552 0.79567 0.83902 0.81271 0.81697 0.83165 0.87119 0.97862 0.98892 0.91773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -8.78 10.62 113.37 1.20 -7.57 16 2 S 2.40 65.09 5.34 -56.49 -0.30 64.79 16 3 O -0.99 -40.84 18.10 -127.37 -2.30 -43.14 16 4 O -0.97 -30.16 18.10 -127.37 -2.30 -32.46 16 5 C -0.54 -13.44 5.71 71.24 0.41 -13.03 16 6 C -0.15 -5.22 5.15 -19.77 -0.10 -5.32 16 7 C -0.07 -1.84 9.70 22.25 0.22 -1.62 16 8 C -0.16 -4.22 10.04 22.28 0.22 -4.00 16 9 C -0.07 -2.21 10.04 22.25 0.22 -1.98 16 10 C -0.24 -9.90 9.04 22.36 0.20 -9.69 16 11 C 0.12 5.16 6.66 22.50 0.15 5.31 16 12 O -0.32 -16.55 9.17 -92.41 -0.85 -17.40 16 13 C 0.21 12.38 4.49 71.24 0.32 12.70 16 14 C -0.55 -33.45 9.43 25.60 0.24 -33.21 16 15 H 0.07 4.11 7.81 -2.91 -0.02 4.09 16 16 C 0.01 0.52 5.46 84.65 0.46 0.99 16 17 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 18 Si 0.99 44.36 29.54 68.60 2.03 46.39 16 19 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 20 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 22 H 0.15 1.73 8.14 -2.39 -0.02 1.72 16 23 H 0.14 1.73 8.14 -2.40 -0.02 1.71 16 24 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.19 2.36 8.09 -2.39 -0.02 2.34 16 26 H 0.14 3.66 7.53 -2.39 -0.02 3.64 16 27 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 28 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 29 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 30 H 0.11 5.00 6.30 -2.91 -0.02 4.98 16 31 H 0.00 0.22 7.66 -2.39 -0.02 0.20 16 32 H -0.01 -0.42 7.66 -2.39 -0.02 -0.44 16 33 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -85.30 303.16 1.21 -84.09 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.11 Total: 11.02 kcal Atomic # 6 Polarization: -60.98 SS G_CDS: 3.55 Total: -57.43 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: 0.28 Total: -55.86 kcal Atomic # 8 Polarization: -87.55 SS G_CDS: -5.46 Total: -93.01 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: 65.09 SS G_CDS: -0.30 Total: 64.79 kcal Total: -85.30 1.21 -84.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349108687.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.499 kcal (2) G-P(sol) polarization free energy of solvation -85.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds