Wall clock time and date at job start Mon Mar 30 2020 00:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86797 * 119.99410 * 2 1 4 4 H 1.48502 * 109.47216 * 269.99594 * 3 2 1 5 5 H 1.48501 * 109.47673 * 29.99824 * 3 2 1 6 6 H 1.48500 * 109.46888 * 150.00201 * 3 2 1 7 7 C 1.38944 * 120.00066 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99526 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99528 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00525 * 0.02562 * 10 9 7 12 12 C 1.50701 * 119.99574 * 180.02562 * 10 9 7 13 13 N 1.46499 * 109.47264 * 179.97438 * 12 10 9 14 14 C 1.34777 * 120.00195 * 179.97438 * 13 12 10 15 15 O 1.21583 * 119.99947 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99726 * 180.27548 * 14 13 12 17 17 C 1.39007 * 119.99875 * 179.72731 * 16 14 13 18 18 N 1.29629 * 124.94194 * 359.69370 * 17 16 14 19 19 C 1.32027 * 116.90479 * 179.81489 * 18 17 16 20 20 C 1.33409 * 114.57059 * 0.47342 * 19 18 17 21 21 S 1.70971 * 124.94668 * 180.02562 * 17 16 14 22 22 H 0.96994 * 120.00789 * 0.02562 * 1 2 3 23 23 H 0.96994 * 120.00366 * 0.02562 * 9 7 2 24 24 H 1.08998 * 109.47477 * 59.99805 * 12 10 9 25 25 H 1.09002 * 109.47412 * 300.00063 * 12 10 9 26 26 H 0.97000 * 120.00069 * 0.02562 * 13 12 10 27 27 H 0.97000 * 120.00483 * 359.73178 * 16 14 13 28 28 H 1.08003 * 122.71045 * 180.22987 * 19 18 17 29 29 H 1.08000 * 125.96982 * 179.73109 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5455 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9975 -3.5577 -0.0005 11 8 3.2104 -3.5577 -0.0001 12 6 1.2441 -4.8629 -0.0011 13 7 2.1961 -5.9764 -0.0016 14 6 1.7469 -7.2471 -0.0017 15 8 0.5516 -7.4693 -0.0018 16 7 2.6228 -8.2714 0.0035 17 6 2.1596 -9.5820 0.0092 18 7 0.9103 -9.9278 0.0157 19 6 0.6486 -11.2219 0.0166 20 6 1.7279 -12.0061 0.0206 21 16 3.1545 -10.9724 0.0167 22 1 -0.4851 0.8399 -0.0004 23 1 0.3535 -2.3907 -0.0005 24 1 0.6177 -4.9205 -0.8913 25 1 0.6170 -4.9209 0.8886 26 1 3.1497 -5.7991 -0.0012 27 1 3.5765 -8.0941 0.0033 28 1 -0.3578 -11.6139 0.0182 29 1 1.7273 -13.0861 0.0261 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353252483.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:27 Heat of formation + Delta-G solvation = -29.439585 kcal Electronic energy + Delta-G solvation = -17266.668584 eV Core-core repulsion = 14123.497257 eV Total energy + Delta-G solvation = -3143.171327 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.057 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.74796 -40.45210 -39.77651 -36.31561 -36.01447 -35.34586 -33.37252 -30.66021 -29.18895 -26.73599 -25.62958 -23.20244 -21.42163 -20.97424 -20.39479 -20.02436 -18.93162 -17.56000 -17.36761 -17.16575 -16.61341 -16.32523 -16.09884 -15.76853 -15.54603 -15.18322 -15.13667 -14.12524 -13.97647 -13.68943 -13.53853 -12.90654 -12.45079 -12.44171 -12.11972 -11.99821 -11.71320 -11.56446 -10.56696 -10.38105 -10.35430 -10.21133 -10.08832 -9.22297 -8.50476 -6.00925 -0.18570 -0.05201 0.74255 1.37215 1.40668 1.45986 1.57397 1.76103 1.90762 2.22691 2.28211 2.78889 3.15393 3.16803 3.73404 4.19144 4.41622 4.43166 4.50071 4.61401 4.89463 5.17420 5.25677 5.38902 5.56617 5.91986 6.47396 6.59694 7.01356 7.03659 7.34165 7.44791 7.93768 8.66348 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.069442 B = 0.003028 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 403.116928 B = 9244.001539 C = 9631.952988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.337 4.337 8 H 0.088 0.912 9 N -0.559 5.559 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.142 3.858 13 N -0.713 5.713 14 C 0.701 3.299 15 O -0.575 6.575 16 N -0.633 5.633 17 C 0.255 3.745 18 N -0.528 5.528 19 C 0.041 3.959 20 C -0.263 4.263 21 S 0.185 5.815 22 H 0.280 0.720 23 H 0.399 0.601 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.414 0.586 27 H 0.436 0.564 28 H 0.192 0.808 29 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -21.253 0.024 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.511 6.511 12 C 0.014 3.986 13 N -0.371 5.371 14 C 0.398 3.602 15 O -0.449 6.449 16 N -0.288 5.288 17 C -0.113 4.113 18 N -0.251 5.251 19 C -0.109 4.109 20 C -0.403 4.403 21 S 0.433 5.567 22 H 0.089 0.911 23 H 0.233 0.767 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.252 0.748 27 H 0.276 0.724 28 H 0.209 0.791 29 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 5.725 -20.901 0.035 21.671 hybrid contribution -0.455 0.924 -0.012 1.031 sum 5.269 -19.977 0.023 20.660 Atomic orbital electron populations 1.69681 1.07047 1.29653 1.49235 1.26141 0.96524 1.02730 0.95755 0.84849 0.77906 0.76427 0.78685 1.19583 1.19754 1.19373 1.19753 0.93022 0.83479 1.50411 0.89408 1.41828 1.09628 1.04584 1.63346 1.20323 0.88095 0.85779 0.83648 1.90467 1.15035 1.87504 1.58049 1.20636 0.90835 0.82788 1.04367 1.44606 1.11462 1.02555 1.78515 1.15911 0.85086 0.80671 0.78497 1.91022 1.14728 1.83619 1.55572 1.41859 1.10694 1.00623 1.75626 1.23734 0.93023 0.90984 1.03584 1.66547 1.17856 1.19721 1.20936 1.21965 1.02157 0.85402 1.01375 1.27321 0.92656 1.06196 1.14157 1.83667 1.09029 0.93727 1.70259 0.91080 0.76686 0.88790 0.88791 0.74753 0.72364 0.79114 0.76754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.57 13.05 21.66 0.28 -48.28 15 2 C -0.01 -0.56 5.50 84.92 0.47 -0.09 15 3 Si 1.00 41.44 29.55 68.60 2.03 43.47 15 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 15 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 7 C -0.34 -18.41 9.68 84.04 0.81 -17.60 15 8 H 0.09 5.02 7.16 -2.91 -0.02 4.99 15 9 N -0.56 -27.79 5.29 -306.98 -1.62 -29.42 15 10 C 0.43 19.72 7.85 87.66 0.69 20.41 15 11 O -0.62 -31.32 15.24 -3.05 -0.05 -31.37 15 12 C 0.14 5.17 6.15 85.63 0.53 5.70 15 13 N -0.71 -23.04 5.53 -482.30 -2.67 -25.71 15 14 C 0.70 23.13 8.53 179.05 1.53 24.65 15 15 O -0.57 -23.73 14.97 -3.98 -0.06 -23.78 15 16 N -0.63 -15.65 5.41 -327.46 -1.77 -17.42 15 17 C 0.26 6.41 8.02 179.20 1.44 7.85 15 18 N -0.53 -15.86 8.65 -201.74 -1.74 -17.61 15 19 C 0.04 0.86 11.34 83.57 0.95 1.81 15 20 C -0.26 -3.69 11.35 66.73 0.76 -2.93 15 21 S 0.18 2.74 23.22 -56.49 -1.31 1.43 15 22 H 0.28 13.88 8.31 -92.71 -0.77 13.11 15 23 H 0.40 19.17 7.90 -92.71 -0.73 18.44 15 24 H 0.09 3.30 8.14 -2.39 -0.02 3.28 15 25 H 0.09 3.30 8.14 -2.39 -0.02 3.28 15 26 H 0.41 12.48 7.45 -92.71 -0.69 11.79 15 27 H 0.44 7.20 8.83 -92.71 -0.82 6.38 15 28 H 0.19 3.10 8.06 -2.91 -0.02 3.08 15 29 H 0.22 1.29 8.06 -2.91 -0.02 1.26 15 Total: -1.00 -73.25 282.70 -0.75 -73.99 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -1.00 Total: 34.90 kcal Atomic # 6 Polarization: 32.63 SS G_CDS: 7.16 Total: 39.79 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -7.52 Total: -138.44 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -0.11 Total: -55.15 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -1.31 Total: 1.43 kcal Total: -73.25 -0.75 -73.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353252483.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.554 kcal (2) G-P(sol) polarization free energy of solvation -73.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds