Wall clock time and date at job start Mon Mar 30 2020 00:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42098 * 110.54427 * 2 1 4 4 O 1.42097 * 110.54253 * 223.24406 * 2 1 3 5 5 C 1.76198 * 104.45074 * 111.62197 * 2 1 3 6 6 C 1.38322 * 119.52818 * 89.99468 * 5 2 1 7 7 C 1.38453 * 119.25583 * 179.97438 * 6 5 2 8 8 C 1.39422 * 118.34980 * 0.28299 * 7 6 5 9 9 N 1.39564 * 120.50168 * 179.70198 * 8 7 6 10 10 C 1.34775 * 120.00211 * 32.76344 * 9 8 7 11 11 O 1.21744 * 119.99954 * 5.27050 * 10 9 8 12 12 C 1.46178 * 120.00002 * 185.26647 * 10 9 8 13 13 H 1.07995 * 119.99969 * 0.02562 * 12 10 9 14 14 C 1.40122 * 119.99763 * 179.97438 * 12 10 9 15 15 N 1.30642 * 120.00081 * 0.02562 * 14 12 10 16 16 Si 1.86794 * 119.99805 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47584 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47310 * 119.99986 * 16 14 12 19 19 H 1.48506 * 109.47434 * 240.00006 * 16 14 12 20 20 C 1.39016 * 118.99284 * 359.47350 * 8 7 6 21 21 N 1.31788 * 120.64408 * 0.53223 * 20 8 7 22 22 H 1.09005 * 109.46747 * 308.37894 * 1 2 3 23 23 H 1.08994 * 109.46947 * 68.37730 * 1 2 3 24 24 H 1.08998 * 109.47155 * 188.38132 * 1 2 3 25 25 H 1.08007 * 120.37282 * 0.02697 * 6 5 2 26 26 H 1.08000 * 120.82829 * 180.02562 * 7 6 5 27 27 H 0.96999 * 119.99548 * 212.76097 * 9 8 7 28 28 H 0.96994 * 119.99425 * 179.97438 * 15 14 12 29 29 H 1.08006 * 119.67398 * 180.25640 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9116 5 6 2.2537 -0.6287 1.5862 6 6 2.4237 -1.9908 1.7564 7 6 2.7697 -2.4787 3.0051 8 6 2.9282 -1.5698 4.0504 9 7 3.2704 -2.0130 5.3287 10 6 4.0602 -3.0949 5.4780 11 8 4.5532 -3.6281 4.5008 12 6 4.3250 -3.6280 6.8131 13 1 3.8873 -3.1552 7.6798 14 6 5.1457 -4.7530 6.9681 15 7 5.6746 -5.3252 5.9195 16 14 5.4834 -5.4347 8.6741 17 1 4.7717 -4.6127 9.6856 18 1 5.0031 -6.8378 8.7506 19 1 6.9435 -5.3960 8.9426 20 6 2.7449 -0.2149 3.7988 21 7 2.4159 0.2061 2.5941 22 1 -0.3633 0.6381 0.8057 23 1 -0.3633 0.3787 -0.9553 24 1 -0.3633 -1.0167 0.1498 25 1 2.2889 -2.6662 0.9244 26 1 2.9092 -3.5374 3.1665 27 1 2.9398 -1.5424 6.1098 28 1 6.2430 -6.1038 6.0270 29 1 2.8690 0.4992 4.5995 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356072078.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:41 Heat of formation + Delta-G solvation = -100.277055 kcal Electronic energy + Delta-G solvation = -17875.105976 eV Core-core repulsion = 14696.570155 eV Total energy + Delta-G solvation = -3178.535821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.53224 -39.45276 -38.10347 -36.95303 -35.79914 -34.67478 -33.26937 -31.38736 -30.23601 -28.49949 -25.25121 -24.60402 -22.10690 -20.27256 -19.79318 -18.89343 -18.04288 -17.87333 -17.29778 -17.18992 -16.38055 -16.01160 -15.79458 -15.26638 -14.95558 -14.62385 -14.31230 -14.06086 -13.90038 -13.79620 -13.25328 -13.12403 -13.00765 -12.90347 -12.82079 -12.40317 -12.03367 -11.86092 -11.79643 -11.04968 -10.86570 -10.80244 -10.01214 -9.30314 -8.46212 -7.04900 -0.85786 -0.34071 0.15932 1.36788 1.39304 1.57087 1.83516 2.14083 2.18968 2.49704 2.63216 3.04483 3.08333 3.43844 3.65207 3.82973 3.93434 4.07950 4.16006 4.37139 4.49203 4.76142 4.98830 5.05767 5.19164 5.26608 5.63608 5.94408 6.03585 6.56631 6.69297 7.12083 8.17498 8.46558 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.054007 B = 0.004017 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.325715 B = 6968.401692 C = 7218.822426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.613 4.613 2 S 2.520 3.480 3 O -0.965 6.965 4 O -0.970 6.970 5 C -0.488 4.488 6 C -0.064 4.064 7 C -0.135 4.135 8 C 0.176 3.824 9 N -0.678 5.678 10 C 0.523 3.477 11 O -0.603 6.603 12 C -0.555 4.555 13 H 0.100 0.900 14 C 0.029 3.971 15 N -0.809 5.809 16 Si 1.003 2.997 17 H -0.243 1.243 18 H -0.269 1.269 19 H -0.270 1.270 20 C 0.035 3.965 21 N -0.384 5.384 22 H 0.152 0.848 23 H 0.165 0.835 24 H 0.156 0.844 25 H 0.170 0.830 26 H 0.126 0.874 27 H 0.418 0.582 28 H 0.280 0.720 29 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.829 7.724 -4.066 15.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.768 4.768 2 S 2.699 3.301 3 O -0.962 6.962 4 O -0.966 6.966 5 C -0.706 4.706 6 C -0.085 4.085 7 C -0.164 4.164 8 C 0.072 3.928 9 N -0.322 5.322 10 C 0.332 3.668 11 O -0.489 6.489 12 C -0.590 4.590 13 H 0.118 0.882 14 C -0.188 4.188 15 N -0.437 5.437 16 Si 0.822 3.178 17 H -0.165 1.165 18 H -0.193 1.193 19 H -0.195 1.195 20 C -0.131 4.131 21 N -0.093 5.093 22 H 0.170 0.830 23 H 0.183 0.817 24 H 0.174 0.826 25 H 0.187 0.813 26 H 0.144 0.856 27 H 0.255 0.745 28 H 0.090 0.910 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.839 8.264 -5.507 15.453 hybrid contribution 0.281 -1.641 1.856 2.493 sum -11.558 6.624 -3.651 13.812 Atomic orbital electron populations 1.29955 1.17890 1.14488 1.14490 1.04914 0.80691 0.72906 0.71553 1.93515 1.79852 1.37455 1.85410 1.93550 1.80306 1.62640 1.60138 1.33247 1.18028 0.98972 1.20340 1.22009 0.93261 0.95566 0.97672 1.21792 0.99990 1.00932 0.93731 1.19485 0.91024 0.94361 0.87897 1.43917 1.50951 1.32116 1.05177 1.18877 0.77846 0.78687 0.91419 1.90631 1.54770 1.61081 1.42401 1.21447 1.31926 1.13780 0.91835 0.88208 1.27039 0.92911 0.95684 1.03211 1.70134 1.23026 1.17032 1.33552 0.84879 0.78755 0.78441 0.75759 1.16546 1.19339 1.19524 1.23176 1.02380 0.91762 0.95818 1.67623 1.06284 1.36678 0.98733 0.83002 0.81667 0.82589 0.81285 0.85562 0.74460 0.91018 0.79004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -6.07 10.80 113.37 1.22 -4.85 15 2 S 2.52 59.65 5.86 -56.49 -0.33 59.32 15 3 O -0.97 -30.18 17.73 -127.65 -2.26 -32.44 15 4 O -0.97 -28.36 17.09 -127.65 -2.18 -30.54 15 5 C -0.49 -15.17 6.53 84.71 0.55 -14.62 15 6 C -0.06 -2.14 9.50 22.34 0.21 -1.93 15 7 C -0.14 -5.54 8.77 22.61 0.20 -5.35 15 8 C 0.18 6.89 6.31 38.38 0.24 7.13 15 9 N -0.68 -27.95 5.33 -307.21 -1.64 -29.58 15 10 C 0.52 27.85 7.50 86.30 0.65 28.50 15 11 O -0.60 -37.35 12.70 -4.49 -0.06 -37.41 15 12 C -0.55 -28.48 9.54 24.79 0.24 -28.24 15 13 H 0.10 4.46 7.85 -2.91 -0.02 4.44 15 14 C 0.03 1.47 5.50 85.33 0.47 1.94 15 15 N -0.81 -46.24 11.82 21.85 0.26 -45.98 15 16 Si 1.00 37.54 29.56 68.60 2.03 39.57 15 17 H -0.24 -8.26 7.11 99.48 0.71 -7.55 15 18 H -0.27 -9.76 7.11 99.48 0.71 -9.05 15 19 H -0.27 -9.91 7.11 99.48 0.71 -9.20 15 20 C 0.04 1.16 11.13 84.89 0.94 2.10 15 21 N -0.38 -12.77 10.03 -192.63 -1.93 -14.70 15 22 H 0.15 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.17 0.71 8.14 -2.39 -0.02 0.69 15 24 H 0.16 0.96 8.14 -2.39 -0.02 0.94 15 25 H 0.17 4.73 7.56 -2.91 -0.02 4.71 15 26 H 0.13 5.96 6.48 -2.91 -0.02 5.94 15 27 H 0.42 13.69 8.80 -92.71 -0.82 12.87 15 28 H 0.28 14.45 8.29 -92.71 -0.77 13.68 15 29 H 0.19 4.92 8.06 -2.91 -0.02 4.90 15 Total: -1.00 -82.57 278.47 -1.00 -83.57 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.39 Total: 23.51 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 4.73 Total: -15.31 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -3.31 Total: -90.27 kcal Atomic # 8 Polarization: -95.89 SS G_CDS: -4.50 Total: -100.39 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Atomic # 16 Polarization: 59.65 SS G_CDS: -0.33 Total: 59.32 kcal Total: -82.57 -1.00 -83.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356072078.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.703 kcal (2) G-P(sol) polarization free energy of solvation -82.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds