Wall clock time and date at job start Mon Mar 30 2020 00:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47028 * 270.00019 * 3 2 1 5 5 H 1.48507 * 109.47012 * 30.00166 * 3 2 1 6 6 H 1.48502 * 109.46821 * 149.99654 * 3 2 1 7 7 C 1.38795 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00515 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99708 * 180.02562 * 7 2 1 10 10 C 1.81007 * 99.99911 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47139 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00160 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00321 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47657 * 180.02562 * 14 13 11 16 16 C 1.38232 * 119.59260 * 94.99267 * 15 14 13 17 17 C 1.38596 * 119.18886 * 180.02562 * 16 15 14 18 18 C 1.38879 * 118.39652 * 0.25621 * 17 16 15 19 19 F 1.35106 * 120.44068 * 179.74732 * 18 17 16 20 20 C 1.38422 * 119.11596 * 359.51901 * 18 17 16 21 21 N 1.31848 * 119.58665 * 275.02099 * 15 14 13 22 22 H 0.96999 * 120.00086 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47267 * 59.99628 * 10 9 7 24 24 H 1.08997 * 109.46618 * 299.99883 * 10 9 7 25 25 H 0.97000 * 120.00061 * 359.97438 * 13 11 10 26 26 H 1.09002 * 109.47537 * 59.99456 * 14 13 11 27 27 H 1.09004 * 109.46651 * 299.99611 * 14 13 11 28 28 H 1.08002 * 120.40687 * 0.02599 * 16 15 14 29 29 H 1.08002 * 120.79700 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.63454 * 180.20814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5731 -3.2325 0.0008 12 8 6.3440 -2.2962 0.0005 13 7 6.0457 -4.4946 0.0011 14 6 7.4907 -4.7357 0.0016 15 6 7.7525 -6.2198 0.0012 16 6 7.9745 -6.8735 -1.1963 17 6 8.2139 -8.2386 -1.1870 18 6 8.2157 -8.9005 0.0340 19 9 8.4394 -10.2317 0.0906 20 6 7.9900 -8.1773 1.1925 21 7 7.7663 -6.8787 1.1432 22 1 -0.4850 0.8400 0.0004 23 1 3.6440 -3.4314 -0.8893 24 1 3.6434 -3.4317 0.8907 25 1 5.4291 -5.2434 0.0018 26 1 7.9335 -4.2885 0.8916 27 1 7.9338 -4.2888 -0.8884 28 1 7.9616 -6.3272 -2.1279 29 1 8.3902 -8.7754 -2.1074 30 1 7.9929 -8.6830 2.1468 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358265214.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:09 Heat of formation + Delta-G solvation = -48.293144 kcal Electronic energy + Delta-G solvation = -16808.820609 eV Core-core repulsion = 13644.911769 eV Total energy + Delta-G solvation = -3163.908840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.45343 -40.73296 -39.14467 -34.95829 -33.01622 -32.44117 -31.81661 -29.49150 -26.39456 -25.57765 -24.41067 -22.57525 -20.57435 -18.22110 -18.00006 -17.77901 -16.91956 -16.47571 -16.18759 -15.56814 -15.30249 -14.96088 -14.46668 -14.41738 -14.05921 -13.59575 -13.50133 -13.17273 -13.16553 -12.79968 -12.38177 -11.91800 -11.26940 -11.00868 -10.62864 -10.46179 -10.10416 -9.88446 -9.73156 -9.29262 -9.08191 -8.99420 -8.50854 -6.92246 -6.29042 -4.00983 0.30956 0.57706 2.69350 2.93114 3.02648 3.32796 3.40542 3.48361 3.50820 3.68263 3.81224 4.10025 4.24331 4.33109 4.33856 4.71606 4.85238 5.09971 5.13477 5.14420 5.30928 5.34284 5.52049 5.61664 5.75972 6.00737 6.07145 6.39285 7.32800 7.52624 7.94043 8.41495 8.42657 9.17065 10.80233 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.050745 B = 0.003087 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.646164 B = 9069.060295 C = 9325.283133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.517 6.517 13 N -0.731 5.731 14 C 0.174 3.826 15 C 0.102 3.898 16 C -0.123 4.123 17 C -0.109 4.109 18 C 0.051 3.949 19 F -0.129 7.129 20 C 0.077 3.923 21 N -0.440 5.440 22 H 0.271 0.729 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.401 0.599 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.705 -18.321 -1.871 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.086 5.914 10 C -0.274 4.274 11 C 0.320 3.680 12 O -0.392 6.392 13 N -0.386 5.386 14 C 0.050 3.950 15 C -0.037 4.037 16 C -0.143 4.143 17 C -0.136 4.136 18 C 0.029 3.971 19 F -0.108 7.108 20 C -0.082 4.082 21 N -0.148 5.148 22 H 0.081 0.919 23 H 0.116 0.884 24 H 0.117 0.883 25 H 0.234 0.766 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.168 0.832 29 H 0.168 0.832 30 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.688 -16.215 -1.092 24.020 hybrid contribution -0.903 -1.595 -0.807 2.003 sum 16.784 -17.810 -1.899 24.546 Atomic orbital electron populations 1.69941 1.05931 1.27781 1.48080 1.24719 0.94456 0.98991 0.93172 0.86729 0.81917 0.83245 0.79923 1.19209 1.19949 1.15869 1.22319 0.88261 0.97548 1.58779 0.89378 1.84786 1.09295 0.99916 1.97435 1.23275 0.93733 1.04471 1.05936 1.20286 0.90675 0.81949 0.75112 1.90712 1.58709 1.42052 1.47681 1.45892 1.06474 1.08319 1.77917 1.20041 0.82937 0.87816 1.04213 1.21384 0.97095 0.96750 0.88424 1.22030 0.98403 0.93865 0.99993 1.21721 0.99037 0.95133 0.97692 1.18897 1.03445 0.78809 0.95954 1.91544 1.91976 1.30067 1.97186 1.22977 0.97410 0.89979 0.97828 1.67605 1.10311 1.07804 1.29126 0.91931 0.88424 0.88328 0.76554 0.89389 0.89507 0.83164 0.83172 0.81254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.56 13.97 55.49 0.78 -25.78 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.69 27.74 -169.99 -4.72 16.98 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.23 -5.92 6.74 56.52 0.38 -5.54 16 7 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 8 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.53 18.55 -107.50 -1.99 -5.53 16 10 C -0.12 -2.35 6.16 36.00 0.22 -2.13 16 11 C 0.53 9.20 7.85 -10.99 -0.09 9.12 16 12 O -0.52 -10.82 15.86 5.55 0.09 -10.73 16 13 N -0.73 -9.11 5.55 -61.47 -0.34 -9.45 16 14 C 0.17 1.88 5.98 -5.20 -0.03 1.84 16 15 C 0.10 0.93 6.15 -82.59 -0.51 0.42 16 16 C -0.12 -0.85 9.72 -39.45 -0.38 -1.23 16 17 C -0.11 -0.71 10.16 -39.21 -0.40 -1.11 16 18 C 0.05 0.39 7.35 -39.28 -0.29 0.10 16 19 F -0.13 -1.04 17.28 2.25 0.04 -1.01 16 20 C 0.08 0.63 11.17 -17.47 -0.20 0.43 16 21 N -0.44 -4.43 10.27 -9.42 -0.10 -4.53 16 22 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 23 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 24 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 25 H 0.40 4.15 8.46 -40.82 -0.35 3.80 16 26 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 28 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.15 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 291.69 15.07 4.40 4.40 Total: -1.00 -34.02 291.69 -6.18 -40.20 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -2.88 Total: -0.04 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.45 Total: -4.51 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.34 Total: -39.76 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.98 kcal Atomic # 16 Polarization: -3.53 SS G_CDS: -1.99 Total: -5.53 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -34.02 -6.18 -40.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358265214.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.091 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds