Wall clock time and date at job start Mon Mar 30 2020 00:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86803 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47028 * 270.00019 * 3 2 1 5 5 H 1.48507 * 109.47012 * 30.00166 * 3 2 1 6 6 H 1.48502 * 109.46821 * 149.99654 * 3 2 1 7 7 C 1.38795 * 119.99804 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00515 * 0.02562 * 7 2 1 9 9 S 1.76205 * 119.99708 * 180.02562 * 7 2 1 10 10 C 1.81007 * 99.99911 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47139 * 179.97438 * 10 9 7 12 12 O 1.21288 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34767 * 120.00160 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00321 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47657 * 180.02562 * 14 13 11 16 16 C 1.38232 * 119.59260 * 94.99267 * 15 14 13 17 17 C 1.38596 * 119.18886 * 180.02562 * 16 15 14 18 18 C 1.38879 * 118.39652 * 0.25621 * 17 16 15 19 19 F 1.35106 * 120.44068 * 179.74732 * 18 17 16 20 20 C 1.38422 * 119.11596 * 359.51901 * 18 17 16 21 21 N 1.31848 * 119.58665 * 275.02099 * 15 14 13 22 22 H 0.96999 * 120.00086 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47267 * 59.99628 * 10 9 7 24 24 H 1.08997 * 109.46618 * 299.99883 * 10 9 7 25 25 H 0.97000 * 120.00061 * 359.97438 * 13 11 10 26 26 H 1.09002 * 109.47537 * 59.99456 * 14 13 11 27 27 H 1.09004 * 109.46651 * 299.99611 * 14 13 11 28 28 H 1.08002 * 120.40687 * 0.02599 * 16 15 14 29 29 H 1.08002 * 120.79700 * 179.97438 * 17 16 15 30 30 H 1.07999 * 119.63454 * 180.20814 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5731 -3.2325 0.0008 12 8 6.3440 -2.2962 0.0005 13 7 6.0457 -4.4946 0.0011 14 6 7.4907 -4.7357 0.0016 15 6 7.7525 -6.2198 0.0012 16 6 7.9745 -6.8735 -1.1963 17 6 8.2139 -8.2386 -1.1870 18 6 8.2157 -8.9005 0.0340 19 9 8.4394 -10.2317 0.0906 20 6 7.9900 -8.1773 1.1925 21 7 7.7663 -6.8787 1.1432 22 1 -0.4850 0.8400 0.0004 23 1 3.6440 -3.4314 -0.8893 24 1 3.6434 -3.4317 0.8907 25 1 5.4291 -5.2434 0.0018 26 1 7.9335 -4.2885 0.8916 27 1 7.9338 -4.2888 -0.8884 28 1 7.9616 -6.3272 -2.1279 29 1 8.3902 -8.7754 -2.1074 30 1 7.9929 -8.6830 2.1468 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358265214.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:09 Heat of formation + Delta-G solvation = -72.810156 kcal Electronic energy + Delta-G solvation = -16809.883747 eV Core-core repulsion = 13644.911769 eV Total energy + Delta-G solvation = -3164.971978 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.058 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -50.05295 -41.42865 -40.42092 -36.06396 -34.66307 -33.59151 -32.76110 -30.78082 -27.90367 -27.21008 -24.98199 -23.27698 -21.87892 -19.96480 -18.74521 -18.39695 -18.15445 -17.65806 -17.09211 -16.85755 -16.59606 -16.44317 -15.73697 -15.12422 -15.04964 -14.93784 -14.70865 -14.36658 -14.23302 -13.94198 -13.36248 -13.31595 -13.06678 -12.98753 -12.63497 -11.85933 -11.15936 -11.13851 -11.01757 -10.70232 -10.52962 -10.21346 -10.01003 -8.98333 -8.50674 -6.21436 -0.31100 0.03294 1.00268 1.32937 1.48221 1.54985 1.57197 2.12355 2.26391 2.60421 2.76065 2.87690 2.88455 3.13464 3.52179 3.74538 3.79384 3.85888 4.22022 4.24901 4.46809 4.48537 4.63541 4.72511 4.81781 4.91973 5.28272 5.51020 5.71580 6.12440 6.38336 6.71556 6.94503 7.13608 8.61836 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.050745 B = 0.003087 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.646164 B = 9069.060295 C = 9325.283133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.236 1.236 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.172 6.172 10 C -0.112 4.112 11 C 0.540 3.460 12 O -0.558 6.558 13 N -0.707 5.707 14 C 0.176 3.824 15 C 0.089 3.911 16 C -0.113 4.113 17 C -0.103 4.103 18 C 0.048 3.952 19 F -0.132 7.132 20 C 0.070 3.930 21 N -0.468 5.468 22 H 0.277 0.723 23 H 0.116 0.884 24 H 0.111 0.889 25 H 0.413 0.587 26 H 0.073 0.927 27 H 0.100 0.900 28 H 0.174 0.826 29 H 0.178 0.822 30 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.126 -19.398 -2.680 26.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.185 1.185 6 H -0.159 1.159 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.055 5.945 10 C -0.263 4.263 11 C 0.326 3.674 12 O -0.436 6.436 13 N -0.361 5.361 14 C 0.052 3.948 15 C -0.049 4.049 16 C -0.133 4.133 17 C -0.129 4.129 18 C 0.026 3.974 19 F -0.111 7.111 20 C -0.090 4.090 21 N -0.177 5.177 22 H 0.086 0.914 23 H 0.134 0.866 24 H 0.129 0.871 25 H 0.250 0.750 26 H 0.091 0.909 27 H 0.118 0.882 28 H 0.192 0.808 29 H 0.195 0.805 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 19.107 -17.349 -1.899 25.878 hybrid contribution -1.299 -1.492 -0.554 2.054 sum 17.808 -18.841 -2.453 26.041 Atomic orbital electron populations 1.70021 1.07372 1.29047 1.49222 1.25588 0.95278 1.02351 0.92876 0.85851 0.80687 0.79459 0.80287 1.18537 1.18479 1.15937 1.22474 0.90350 0.96670 1.58200 0.92017 1.84684 1.06288 1.05989 1.97586 1.23267 0.95758 0.99733 1.07522 1.19881 0.89405 0.82966 0.75163 1.90703 1.59183 1.43579 1.50106 1.45656 1.07876 1.06986 1.75616 1.20100 0.81188 0.89359 1.04139 1.21183 0.98657 0.95766 0.89248 1.22220 0.97073 0.94091 0.99962 1.22032 0.97621 0.94973 0.98257 1.19010 1.03311 0.78686 0.96407 1.91540 1.91994 1.30308 1.97231 1.23197 0.97351 0.89514 0.98894 1.67531 1.11417 1.08762 1.29978 0.91370 0.86568 0.87066 0.75032 0.90907 0.88217 0.80820 0.80496 0.79876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.95 13.97 21.65 0.30 -55.64 16 2 C 0.04 2.60 5.50 84.86 0.47 3.06 16 3 Si 0.92 44.75 27.74 68.60 1.90 46.65 16 4 H -0.26 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.24 -11.47 6.74 99.48 0.67 -10.80 16 7 C -0.53 -30.68 10.04 67.95 0.68 -29.99 16 8 H 0.06 3.77 8.03 -2.91 -0.02 3.75 16 9 S -0.17 -8.58 18.55 -56.49 -1.05 -9.63 16 10 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 11 C 0.54 17.87 7.85 87.66 0.69 18.56 16 12 O -0.56 -22.89 15.86 -3.06 -0.05 -22.94 16 13 N -0.71 -16.25 5.55 -466.80 -2.59 -18.84 16 14 C 0.18 3.49 5.98 85.63 0.51 4.00 16 15 C 0.09 1.45 6.15 42.55 0.26 1.71 16 16 C -0.11 -1.22 9.72 22.35 0.22 -1.00 16 17 C -0.10 -1.00 10.16 22.51 0.23 -0.77 16 18 C 0.05 0.62 7.35 22.47 0.17 0.79 16 19 F -0.13 -1.87 17.28 44.97 0.78 -1.09 16 20 C 0.07 1.03 11.17 84.73 0.95 1.97 16 21 N -0.47 -8.77 10.27 -183.71 -1.89 -10.65 16 22 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 24 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 25 H 0.41 7.56 8.46 -92.71 -0.78 6.77 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.10 1.76 8.04 -2.38 -0.02 1.74 16 28 H 0.17 1.02 8.06 -2.91 -0.02 1.00 16 29 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -73.56 291.69 2.37 -71.19 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.36 Total: 6.32 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 4.61 Total: -5.35 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -4.17 Total: -85.14 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.78 Total: -1.09 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.05 Total: -9.63 kcal Total: -73.56 2.37 -71.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358265214.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.620 kcal (2) G-P(sol) polarization free energy of solvation -73.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds