Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39822 * 120.07633 * 80.55442 * 3 2 1 5 5 C 1.37630 * 119.92415 * 179.97438 * 4 3 2 6 6 C 1.39193 * 120.07688 * 0.02562 * 5 4 3 7 7 N 1.39185 * 119.92639 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99956 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47267 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00226 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47034 * 60.00002 * 13 11 9 15 15 H 1.48499 * 109.47019 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47089 * 300.00208 * 13 11 9 17 17 C 1.39158 * 120.15202 * 359.97438 * 6 5 4 18 18 C 1.50699 * 119.96630 * 180.02562 * 17 6 5 19 19 F 1.39899 * 109.47364 * 180.02562 * 18 17 6 20 20 F 1.39903 * 109.47090 * 300.00247 * 18 17 6 21 21 F 1.39905 * 109.46765 * 60.00065 * 18 17 6 22 22 C 1.37675 * 120.07261 * 359.72094 * 17 6 5 23 23 H 1.07999 * 120.03413 * 0.02562 * 4 3 2 24 24 H 1.08003 * 119.96033 * 180.02562 * 5 4 3 25 25 H 0.96999 * 120.00041 * 179.97438 * 7 6 5 26 26 H 1.09000 * 109.47354 * 299.99749 * 8 7 6 27 27 H 1.08998 * 109.47306 * 59.99511 * 8 7 6 28 28 H 0.96998 * 119.99742 * 179.97438 * 12 11 9 29 29 H 1.08001 * 120.03679 * 180.27629 * 22 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.1976 -1.1936 5 6 4.6451 -0.1959 -1.1900 6 6 5.3394 0.0024 0.0000 7 7 6.7312 0.0041 -0.0002 8 6 7.4638 -0.2021 -1.2519 9 6 8.9454 -0.1547 -0.9806 10 1 9.3053 0.0127 0.0239 11 6 9.8415 -0.3251 -2.0145 12 7 9.4032 -0.5295 -3.2376 13 14 11.6780 -0.2657 -1.6782 14 1 12.0390 -1.3333 -0.7111 15 1 12.4206 -0.4748 -2.9471 16 1 12.0344 1.0588 -1.1092 17 6 4.6451 0.2000 1.1897 18 6 5.4010 0.4149 2.4755 19 9 4.4939 0.5886 3.5264 20 9 6.2065 -0.6993 2.7348 21 9 6.2045 1.5543 2.3593 22 6 3.2684 0.2057 1.1923 23 1 2.7307 -0.3511 -2.1173 24 1 5.1870 -0.3485 -2.1117 25 1 7.2161 0.1426 0.8284 26 1 7.2017 -1.1738 -1.6706 27 1 7.1994 0.5823 -1.9611 28 1 10.0336 -0.6490 -3.9650 29 1 2.7302 0.3636 2.1152 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362661380.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = -106.646377 kcal Electronic energy + Delta-G solvation = -19907.345588 eV Core-core repulsion = 16187.065975 eV Total energy + Delta-G solvation = -3720.279613 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -50.02049 -47.55633 -47.42644 -39.62828 -36.68978 -35.22854 -32.92946 -31.94062 -29.95380 -27.10123 -25.80030 -23.68332 -22.48968 -21.40052 -19.34716 -18.44866 -18.30359 -17.55725 -16.54091 -16.17283 -15.60936 -14.78917 -14.44823 -14.36973 -14.04335 -14.00902 -13.89427 -13.68530 -13.61358 -13.55699 -13.40098 -13.34357 -12.64749 -12.54194 -12.21654 -12.02462 -11.85445 -11.09172 -11.04719 -10.99254 -10.35766 -9.87157 -9.64018 -9.23589 -8.72674 -7.21868 -6.37997 -4.44777 1.08015 1.18307 2.72658 2.91684 3.04020 3.16143 3.21327 3.22938 3.77972 3.88426 3.90380 4.06332 4.22728 4.30886 4.60966 4.83327 5.00317 5.05415 5.42361 5.55249 5.81748 6.02742 6.19648 6.35995 6.60279 6.84382 7.09373 7.35098 7.64475 7.65649 7.72975 8.16254 8.61014 9.22644 10.72133 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.005491 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.349526 B = 5098.279111 C = 6227.819477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C 0.274 3.726 3 C -0.129 4.129 4 C 0.009 3.991 5 C -0.200 4.200 6 C 0.305 3.695 7 N -0.696 5.696 8 C 0.241 3.759 9 C -0.548 4.548 10 H 0.064 0.936 11 C 0.068 3.932 12 N -0.886 5.886 13 Si 0.906 3.094 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.274 1.274 17 C -0.294 4.294 18 C 0.515 3.485 19 F -0.181 7.181 20 F -0.177 7.177 21 F -0.177 7.177 22 C 0.033 3.967 23 H 0.135 0.865 24 H 0.148 0.852 25 H 0.398 0.602 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.269 0.731 29 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.351 1.117 6.740 10.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.039 4.039 3 C -0.136 4.136 4 C -0.012 4.012 5 C -0.223 4.223 6 C 0.185 3.815 7 N -0.311 5.311 8 C 0.120 3.880 9 C -0.586 4.586 10 H 0.082 0.918 11 C -0.136 4.136 12 N -0.523 5.523 13 Si 0.733 3.267 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.199 1.199 17 C -0.302 4.302 18 C 0.461 3.539 19 F -0.163 7.163 20 F -0.159 7.159 21 F -0.159 7.159 22 C 0.012 3.988 23 H 0.152 0.848 24 H 0.166 0.834 25 H 0.234 0.766 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.775 1.054 6.360 10.888 hybrid contribution 1.843 0.110 0.634 1.952 sum -6.932 1.165 6.994 9.916 Atomic orbital electron populations 1.81213 1.12160 1.11465 1.07742 1.25584 0.92420 0.92565 0.93380 1.15434 0.84145 1.19137 0.94896 1.20998 0.93407 0.90555 0.96281 1.20706 0.93526 1.10536 0.97548 1.17883 0.85239 0.86209 0.92153 1.46089 1.01547 1.69392 1.14119 1.19443 0.91221 0.97260 0.80032 1.21082 0.89927 1.52337 0.95217 0.91779 1.24897 0.99819 0.94222 0.94688 1.69906 1.35547 1.47130 0.99736 0.86423 0.83603 0.78925 0.77785 1.19902 1.20924 1.19910 1.19115 0.94343 1.25189 0.91508 1.18130 0.77384 0.74070 0.84322 1.93130 1.67227 1.95333 1.60561 1.93227 1.74710 1.53062 1.94864 1.93228 1.74816 1.51735 1.96090 1.20527 0.91400 0.89580 0.97323 0.84763 0.83445 0.76640 0.94820 0.94830 0.92133 0.84451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.77 18.54 41.83 0.78 -5.99 15 2 C 0.27 3.61 15.33 -22.47 -0.34 3.27 15 3 C -0.13 -1.58 5.74 -106.80 -0.61 -2.20 15 4 C 0.01 0.11 9.75 -39.21 -0.38 -0.27 15 5 C -0.20 -2.85 9.28 -39.45 -0.37 -3.22 15 6 C 0.30 4.82 6.55 -83.83 -0.55 4.27 15 7 N -0.70 -12.88 5.45 -59.80 -0.33 -13.21 15 8 C 0.24 5.33 4.65 -5.20 -0.02 5.30 15 9 C -0.55 -13.63 9.28 -34.44 -0.32 -13.95 15 10 H 0.06 1.56 7.60 -52.49 -0.40 1.16 15 11 C 0.07 1.74 5.46 -17.82 -0.10 1.64 15 12 N -0.89 -23.53 13.29 55.43 0.74 -22.79 15 13 Si 0.91 19.73 29.54 -169.99 -5.02 14.71 15 14 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 15 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 17 C -0.29 -4.16 5.38 -104.49 -0.56 -4.72 15 18 C 0.52 7.34 2.80 36.00 0.10 7.44 15 19 F -0.18 -2.36 15.96 2.25 0.04 -2.32 15 20 F -0.18 -2.69 16.24 2.25 0.04 -2.65 15 21 F -0.18 -2.69 16.23 2.25 0.04 -2.66 15 22 C 0.03 0.41 9.13 -39.21 -0.36 0.05 15 23 H 0.13 1.27 8.06 -52.49 -0.42 0.85 15 24 H 0.15 2.17 6.70 -52.48 -0.35 1.82 15 25 H 0.40 7.31 5.71 -40.82 -0.23 7.08 15 26 H 0.03 0.79 7.93 -51.93 -0.41 0.37 15 27 H 0.03 0.78 7.94 -51.93 -0.41 0.37 15 28 H 0.27 6.79 8.31 -40.82 -0.34 6.45 15 29 H 0.14 1.44 7.14 -52.49 -0.37 1.07 15 LS Contribution 279.29 15.07 4.21 4.21 Total: -1.00 -25.92 279.29 -4.77 -30.69 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -1.74 Total: 2.40 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -3.52 Total: -2.38 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 1.19 Total: -41.99 kcal Atomic # 9 Polarization: -7.74 SS G_CDS: 0.11 Total: -7.63 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -25.92 -4.77 -30.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362661380.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.959 kcal (2) G-P(sol) polarization free energy of solvation -25.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds