Wall clock time and date at job start Mon Mar 30 2020 01:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39822 * 120.07633 * 80.55442 * 3 2 1 5 5 C 1.37630 * 119.92415 * 179.97438 * 4 3 2 6 6 C 1.39193 * 120.07688 * 0.02562 * 5 4 3 7 7 N 1.39185 * 119.92639 * 180.02562 * 6 5 4 8 8 C 1.46499 * 119.99956 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47267 * 179.97438 * 8 7 6 10 10 H 1.08002 * 119.99857 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00226 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99684 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00127 * 179.97438 * 11 9 8 14 14 H 1.48510 * 109.47034 * 60.00002 * 13 11 9 15 15 H 1.48499 * 109.47019 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47089 * 300.00208 * 13 11 9 17 17 C 1.39158 * 120.15202 * 359.97438 * 6 5 4 18 18 C 1.50699 * 119.96630 * 180.02562 * 17 6 5 19 19 F 1.39899 * 109.47364 * 180.02562 * 18 17 6 20 20 F 1.39903 * 109.47090 * 300.00247 * 18 17 6 21 21 F 1.39905 * 109.46765 * 60.00065 * 18 17 6 22 22 C 1.37675 * 120.07261 * 359.72094 * 17 6 5 23 23 H 1.07999 * 120.03413 * 0.02562 * 4 3 2 24 24 H 1.08003 * 119.96033 * 180.02562 * 5 4 3 25 25 H 0.96999 * 120.00041 * 179.97438 * 7 6 5 26 26 H 1.09000 * 109.47354 * 299.99749 * 8 7 6 27 27 H 1.08998 * 109.47306 * 59.99511 * 8 7 6 28 28 H 0.96998 * 119.99742 * 179.97438 * 12 11 9 29 29 H 1.08001 * 120.03679 * 180.27629 * 22 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.1976 -1.1936 5 6 4.6451 -0.1959 -1.1900 6 6 5.3394 0.0024 0.0000 7 7 6.7312 0.0041 -0.0002 8 6 7.4638 -0.2021 -1.2519 9 6 8.9454 -0.1547 -0.9806 10 1 9.3053 0.0127 0.0239 11 6 9.8415 -0.3251 -2.0145 12 7 9.4032 -0.5295 -3.2376 13 14 11.6780 -0.2657 -1.6782 14 1 12.0390 -1.3333 -0.7111 15 1 12.4206 -0.4748 -2.9471 16 1 12.0344 1.0588 -1.1092 17 6 4.6451 0.2000 1.1897 18 6 5.4010 0.4149 2.4755 19 9 4.4939 0.5886 3.5264 20 9 6.2065 -0.6993 2.7348 21 9 6.2045 1.5543 2.3593 22 6 3.2684 0.2057 1.1923 23 1 2.7307 -0.3511 -2.1173 24 1 5.1870 -0.3485 -2.1117 25 1 7.2161 0.1426 0.8284 26 1 7.2017 -1.1738 -1.6706 27 1 7.1994 0.5823 -1.9611 28 1 10.0336 -0.6490 -3.9650 29 1 2.7302 0.3636 2.1152 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362661380.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:00 Heat of formation + Delta-G solvation = -119.797706 kcal Electronic energy + Delta-G solvation = -19907.915872 eV Core-core repulsion = 16187.065975 eV Total energy + Delta-G solvation = -3720.849897 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -51.16670 -48.67261 -48.60741 -40.79170 -37.90706 -36.58915 -34.69148 -33.09283 -31.29698 -28.72489 -26.93337 -25.28066 -23.67357 -22.74944 -20.48553 -19.65612 -19.46089 -19.03278 -17.78147 -17.57945 -17.08313 -16.32044 -15.64805 -15.58073 -15.26930 -15.24168 -15.04601 -14.93237 -14.77085 -14.76684 -14.71349 -14.58393 -14.06214 -13.71541 -13.65157 -13.40537 -13.08325 -12.75735 -12.73241 -12.28674 -12.00578 -11.47764 -11.24608 -10.59497 -10.29957 -8.54550 -8.30939 -6.43191 -0.04329 0.10558 1.44292 1.44698 1.52896 1.61428 1.80135 1.91711 2.30718 2.53944 2.76339 2.79939 2.93233 3.05682 3.18534 3.45866 3.76730 4.05663 4.24887 4.43431 4.74551 4.90522 4.97725 5.13788 5.28325 5.28630 5.46282 5.65058 5.85899 6.17414 6.55823 6.59749 6.81302 7.28047 8.79459 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.005491 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.349526 B = 5098.279111 C = 6227.819477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.295 3.705 3 C -0.115 4.115 4 C 0.028 3.972 5 C -0.210 4.210 6 C 0.287 3.713 7 N -0.710 5.710 8 C 0.261 3.739 9 C -0.563 4.563 10 H 0.065 0.935 11 C 0.019 3.981 12 N -0.917 5.917 13 Si 0.967 3.033 14 H -0.269 1.269 15 H -0.281 1.281 16 H -0.269 1.269 17 C -0.291 4.291 18 C 0.516 3.484 19 F -0.171 7.171 20 F -0.184 7.184 21 F -0.184 7.184 22 C 0.042 3.958 23 H 0.164 0.836 24 H 0.138 0.862 25 H 0.396 0.604 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.270 0.730 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.191 1.234 7.434 11.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.018 4.018 3 C -0.122 4.122 4 C 0.007 3.993 5 C -0.233 4.233 6 C 0.171 3.829 7 N -0.329 5.329 8 C 0.139 3.861 9 C -0.601 4.601 10 H 0.083 0.917 11 C -0.182 4.182 12 N -0.555 5.555 13 Si 0.791 3.209 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.194 1.194 17 C -0.299 4.299 18 C 0.462 3.538 19 F -0.153 7.153 20 F -0.165 7.165 21 F -0.165 7.165 22 C 0.021 3.979 23 H 0.182 0.818 24 H 0.156 0.844 25 H 0.232 0.768 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.079 0.921 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.669 1.174 7.076 12.039 hybrid contribution 1.928 0.081 0.459 1.983 sum -7.742 1.255 7.535 10.876 Atomic orbital electron populations 1.81260 1.13007 1.12266 1.08647 1.25452 0.92130 0.91722 0.92500 1.15436 0.83699 1.18063 0.94973 1.21230 0.92355 0.88316 0.97434 1.20717 0.94479 1.11323 0.96778 1.18118 0.84191 0.87107 0.93439 1.45685 1.02533 1.72139 1.12560 1.18911 0.90421 0.95546 0.81225 1.21488 0.91591 1.51754 0.95297 0.91720 1.25710 1.03956 0.93964 0.94548 1.70006 1.36831 1.48215 1.00478 0.85467 0.78713 0.79026 0.77664 1.19411 1.20629 1.19423 1.19135 0.94929 1.24987 0.90810 1.18125 0.77335 0.73678 0.84630 1.93148 1.66743 1.95252 1.60123 1.93214 1.74992 1.53406 1.94918 1.93216 1.75097 1.52072 1.96149 1.20742 0.90574 0.88263 0.98353 0.81805 0.84431 0.76820 0.96640 0.96649 0.92083 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -13.09 18.54 19.00 0.35 -12.74 15 2 C 0.30 6.87 15.33 88.33 1.35 8.22 15 3 C -0.12 -2.46 5.74 -21.27 -0.12 -2.59 15 4 C 0.03 0.59 9.75 22.51 0.22 0.81 15 5 C -0.21 -5.80 9.28 22.36 0.21 -5.60 15 6 C 0.29 8.94 6.55 38.42 0.25 9.19 15 7 N -0.71 -26.72 5.45 -343.11 -1.87 -28.59 15 8 C 0.26 11.90 4.65 85.63 0.40 12.30 15 9 C -0.56 -28.51 9.28 25.60 0.24 -28.27 15 10 H 0.06 3.18 7.60 -2.91 -0.02 3.16 15 11 C 0.02 1.00 5.46 84.66 0.46 1.46 15 12 N -0.92 -49.48 13.29 21.45 0.28 -49.19 15 13 Si 0.97 40.46 29.54 68.60 2.03 42.49 15 14 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 15 H -0.28 -11.54 7.11 99.48 0.71 -10.83 15 16 H -0.27 -10.98 7.11 99.48 0.71 -10.28 15 17 C -0.29 -7.79 5.38 -19.78 -0.11 -7.89 15 18 C 0.52 14.07 2.80 71.24 0.20 14.27 15 19 F -0.17 -4.10 15.96 44.97 0.72 -3.38 15 20 F -0.18 -5.45 16.24 44.97 0.73 -4.72 15 21 F -0.18 -5.45 16.23 44.97 0.73 -4.72 15 22 C 0.04 0.91 9.13 22.51 0.21 1.11 15 23 H 0.16 2.53 8.06 -2.91 -0.02 2.51 15 24 H 0.14 4.11 6.70 -2.91 -0.02 4.09 15 25 H 0.40 14.79 5.71 -92.71 -0.53 14.26 15 26 H 0.02 0.76 7.93 -2.39 -0.02 0.74 15 27 H 0.02 0.76 7.94 -2.39 -0.02 0.74 15 28 H 0.27 13.80 8.31 -92.71 -0.77 13.03 15 29 H 0.16 2.78 7.14 -2.91 -0.02 2.76 15 Total: -1.00 -54.92 279.29 6.98 -47.94 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 0.70 Total: 9.91 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 3.31 Total: 3.02 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -1.23 Total: -90.53 kcal Atomic # 9 Polarization: -15.01 SS G_CDS: 2.18 Total: -12.83 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -54.92 6.98 -47.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362661380.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.855 kcal (2) G-P(sol) polarization free energy of solvation -54.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds