Wall clock time and date at job start Mon Mar 30 2020 01:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39539 * 120.11428 * 230.67811 * 3 2 1 5 5 C 1.38624 * 119.76769 * 180.02562 * 4 3 2 6 6 N 1.39706 * 119.99856 * 179.97438 * 5 4 3 7 7 C 1.46507 * 120.00064 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47006 * 180.02562 * 7 6 5 9 9 H 1.07991 * 120.00449 * 359.72165 * 8 7 6 10 10 C 1.37885 * 119.99686 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.72095 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.72528 * 10 8 7 13 13 H 1.48498 * 109.47416 * 59.99812 * 12 10 8 14 14 H 1.48508 * 109.46609 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46903 * 299.99397 * 12 10 8 16 16 C 1.39033 * 120.00116 * 0.27372 * 5 4 3 17 17 C 1.38209 * 120.22894 * 359.44218 * 16 5 4 18 18 C 1.38022 * 120.22967 * 0.56079 * 17 16 5 19 19 C 1.50701 * 119.99695 * 179.70028 * 18 17 16 20 20 F 1.39898 * 109.47178 * 0.02562 * 19 18 17 21 21 F 1.39901 * 109.47054 * 120.01959 * 19 18 17 22 22 F 1.39897 * 109.46824 * 240.01817 * 19 18 17 23 23 H 1.08000 * 120.11871 * 0.03611 * 4 3 2 24 24 H 0.97004 * 120.00385 * 0.02562 * 6 5 4 25 25 H 1.08998 * 109.47049 * 59.99787 * 7 6 5 26 26 H 1.09001 * 109.46896 * 300.00058 * 7 6 5 27 27 H 0.97000 * 119.99651 * 180.02562 * 11 10 8 28 28 H 1.07998 * 119.88654 * 179.72524 * 16 5 4 29 29 H 1.07993 * 119.88485 * 180.27539 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 0.7658 0.9338 5 6 4.6540 0.7616 0.9269 6 7 5.3595 1.5263 1.8593 7 6 6.8245 1.5222 1.8518 8 6 7.3350 2.4207 2.9487 9 1 6.6380 2.9460 3.5846 10 6 8.6920 2.5761 3.1370 11 7 9.5409 1.9359 2.3628 12 14 9.3247 3.6957 4.4918 13 1 8.8336 3.2091 5.8059 14 1 10.8098 3.6905 4.4848 15 1 8.8340 5.0782 4.2609 16 6 5.3422 0.0011 -0.0117 17 6 4.6492 -0.7613 -0.9328 18 6 3.2690 -0.7641 -0.9347 19 6 2.5185 -1.5921 -1.9458 20 9 3.4301 -2.2642 -2.7671 21 9 1.7149 -2.5245 -1.2808 22 9 1.7139 -0.7566 -2.7278 23 1 2.7313 1.3592 1.6594 24 1 4.8793 2.0600 2.5117 25 1 7.1839 1.8841 0.8884 26 1 7.1859 0.5071 2.0163 27 1 10.4955 2.0449 2.4956 28 1 6.4222 0.0026 -0.0182 29 1 5.1894 -1.3534 -1.6566 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362676585.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:18 Heat of formation + Delta-G solvation = -101.947620 kcal Electronic energy + Delta-G solvation = -19467.102625 eV Core-core repulsion = 15747.026766 eV Total energy + Delta-G solvation = -3720.075859 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.07047 -47.60073 -47.52369 -39.63036 -36.74235 -35.40059 -32.97217 -31.35419 -30.44770 -27.36573 -25.10950 -24.08894 -22.40494 -21.69951 -19.09514 -18.39560 -18.36510 -17.60997 -17.13053 -15.66192 -15.41893 -14.75451 -14.58814 -14.53696 -14.34360 -14.07814 -13.94448 -13.75978 -13.70036 -13.46165 -13.36430 -13.16721 -13.10442 -12.64031 -12.27091 -12.05789 -11.51374 -11.21681 -11.07541 -11.05966 -10.36554 -10.01581 -9.63357 -9.00890 -8.74296 -7.16420 -6.38343 -4.45193 0.73352 1.35036 2.57358 2.77346 3.02130 3.14066 3.20015 3.20763 3.66369 3.78645 3.80662 4.09794 4.11424 4.27890 4.53974 4.88074 4.99793 5.27347 5.39343 5.53834 5.78929 6.00858 6.28291 6.35698 6.60535 6.88225 7.13327 7.37711 7.38314 7.69929 7.83247 8.26454 8.62889 9.22324 10.71838 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.003919 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.548779 B = 7143.767112 C = 7739.513389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C 0.248 3.752 3 C 0.069 3.931 4 C -0.166 4.166 5 C 0.260 3.740 6 N -0.708 5.708 7 C 0.244 3.756 8 C -0.547 4.547 9 H 0.064 0.936 10 C 0.067 3.933 11 N -0.886 5.886 12 Si 0.905 3.095 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 C -0.179 4.179 17 C -0.018 4.018 18 C -0.234 4.234 19 C 0.511 3.489 20 F -0.178 7.178 21 F -0.181 7.181 22 F -0.181 7.181 23 H 0.136 0.864 24 H 0.398 0.602 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.269 0.731 28 H 0.145 0.855 29 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.298 -4.877 -5.966 11.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.079 5.079 2 C -0.068 4.068 3 C 0.064 3.936 4 C -0.192 4.192 5 C 0.146 3.854 6 N -0.327 5.327 7 C 0.123 3.877 8 C -0.585 4.585 9 H 0.082 0.918 10 C -0.137 4.137 11 N -0.523 5.523 12 Si 0.732 3.268 13 H -0.200 1.200 14 H -0.209 1.209 15 H -0.200 1.200 16 C -0.203 4.203 17 C -0.037 4.037 18 C -0.241 4.241 19 C 0.457 3.543 20 F -0.159 7.159 21 F -0.163 7.163 22 F -0.163 7.163 23 H 0.154 0.846 24 H 0.233 0.767 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.163 0.837 29 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.584 -4.880 -5.971 12.302 hybrid contribution 0.606 0.655 0.793 1.194 sum -8.978 -4.225 -5.179 11.193 Atomic orbital electron populations 1.81189 1.11849 1.07510 1.07307 1.25717 0.92782 0.94145 0.94147 1.15143 0.83604 0.98252 0.96584 1.20481 0.92416 1.04452 1.01845 1.18022 0.90221 0.88670 0.88531 1.45861 1.09070 1.45749 1.31976 1.19334 0.72516 0.97834 0.98017 1.21094 0.92208 1.28666 1.16562 0.91821 1.24912 0.96507 0.95809 0.96509 1.69910 1.02931 1.41373 1.38107 0.86440 0.77838 0.80807 0.81708 1.19969 1.20943 1.19978 1.20957 1.01315 1.00778 0.97208 1.20593 0.90943 0.95463 0.96716 1.19368 0.94803 1.07992 1.01960 1.18254 0.77277 0.78233 0.80505 1.93144 1.66796 1.81599 1.74364 1.93207 1.75014 1.67538 1.80502 1.93206 1.74957 1.71539 1.76550 0.84581 0.76710 0.95313 0.95281 0.92151 0.83749 0.84118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.44 18.54 41.84 0.78 -5.67 15 2 C 0.25 3.62 13.17 -22.47 -0.30 3.32 15 3 C 0.07 0.93 5.71 -106.97 -0.61 0.32 15 4 C -0.17 -2.18 9.60 -38.95 -0.37 -2.56 15 5 C 0.26 3.87 6.65 -83.83 -0.56 3.32 15 6 N -0.71 -12.07 5.73 -59.84 -0.34 -12.41 15 7 C 0.24 5.25 4.66 -5.19 -0.02 5.22 15 8 C -0.55 -13.24 9.28 -34.44 -0.32 -13.56 15 9 H 0.06 1.47 7.60 -52.49 -0.40 1.08 15 10 C 0.07 1.68 5.46 -17.82 -0.10 1.59 15 11 N -0.89 -23.39 13.29 55.43 0.74 -22.66 15 12 Si 0.91 19.38 29.54 -169.99 -5.02 14.35 15 13 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 14 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 16 C -0.18 -2.55 9.31 -39.30 -0.37 -2.91 15 17 C -0.02 -0.22 9.41 -39.67 -0.37 -0.60 15 18 C -0.23 -3.12 5.40 -104.18 -0.56 -3.68 15 19 C 0.51 6.86 2.89 36.01 0.10 6.96 15 20 F -0.18 -2.22 15.97 2.25 0.04 -2.19 15 21 F -0.18 -2.57 16.52 2.25 0.04 -2.53 15 22 F -0.18 -2.57 16.52 2.25 0.04 -2.53 15 23 H 0.14 1.54 8.06 -52.49 -0.42 1.11 15 24 H 0.40 6.22 8.33 -40.82 -0.34 5.88 15 25 H 0.03 0.67 7.93 -51.93 -0.41 0.25 15 26 H 0.03 0.67 7.95 -51.93 -0.41 0.26 15 27 H 0.27 6.75 8.31 -40.82 -0.34 6.41 15 28 H 0.14 2.15 6.71 -52.49 -0.35 1.79 15 29 H 0.14 1.47 7.14 -52.49 -0.37 1.09 15 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -25.76 280.98 -4.83 -30.59 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -1.85 Total: 1.38 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -3.48 Total: -2.58 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 1.17 Total: -40.73 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 0.11 Total: -7.25 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -25.76 -4.83 -30.59 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362676585.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.353 kcal (2) G-P(sol) polarization free energy of solvation -25.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds