Wall clock time and date at job start Mon Mar 30 2020 01:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39539 * 120.11428 * 230.67811 * 3 2 1 5 5 C 1.38624 * 119.76769 * 180.02562 * 4 3 2 6 6 N 1.39706 * 119.99856 * 179.97438 * 5 4 3 7 7 C 1.46507 * 120.00064 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47006 * 180.02562 * 7 6 5 9 9 H 1.07991 * 120.00449 * 359.72165 * 8 7 6 10 10 C 1.37885 * 119.99686 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99913 * 359.72095 * 10 8 7 12 12 Si 1.86798 * 119.99766 * 179.72528 * 10 8 7 13 13 H 1.48498 * 109.47416 * 59.99812 * 12 10 8 14 14 H 1.48508 * 109.46609 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.46903 * 299.99397 * 12 10 8 16 16 C 1.39033 * 120.00116 * 0.27372 * 5 4 3 17 17 C 1.38209 * 120.22894 * 359.44218 * 16 5 4 18 18 C 1.38022 * 120.22967 * 0.56079 * 17 16 5 19 19 C 1.50701 * 119.99695 * 179.70028 * 18 17 16 20 20 F 1.39898 * 109.47178 * 0.02562 * 19 18 17 21 21 F 1.39901 * 109.47054 * 120.01959 * 19 18 17 22 22 F 1.39897 * 109.46824 * 240.01817 * 19 18 17 23 23 H 1.08000 * 120.11871 * 0.03611 * 4 3 2 24 24 H 0.97004 * 120.00385 * 0.02562 * 6 5 4 25 25 H 1.08998 * 109.47049 * 59.99787 * 7 6 5 26 26 H 1.09001 * 109.46896 * 300.00058 * 7 6 5 27 27 H 0.97000 * 119.99651 * 180.02562 * 11 10 8 28 28 H 1.07998 * 119.88654 * 179.72524 * 16 5 4 29 29 H 1.07993 * 119.88485 * 180.27539 * 17 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2678 0.7658 0.9338 5 6 4.6540 0.7616 0.9269 6 7 5.3595 1.5263 1.8593 7 6 6.8245 1.5222 1.8518 8 6 7.3350 2.4207 2.9487 9 1 6.6380 2.9460 3.5846 10 6 8.6920 2.5761 3.1370 11 7 9.5409 1.9359 2.3628 12 14 9.3247 3.6957 4.4918 13 1 8.8336 3.2091 5.8059 14 1 10.8098 3.6905 4.4848 15 1 8.8340 5.0782 4.2609 16 6 5.3422 0.0011 -0.0117 17 6 4.6492 -0.7613 -0.9328 18 6 3.2690 -0.7641 -0.9347 19 6 2.5185 -1.5921 -1.9458 20 9 3.4301 -2.2642 -2.7671 21 9 1.7149 -2.5245 -1.2808 22 9 1.7139 -0.7566 -2.7278 23 1 2.7313 1.3592 1.6594 24 1 4.8793 2.0600 2.5117 25 1 7.1839 1.8841 0.8884 26 1 7.1859 0.5071 2.0163 27 1 10.4955 2.0449 2.4956 28 1 6.4222 0.0026 -0.0182 29 1 5.1894 -1.3534 -1.6566 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362676585.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:17 Heat of formation + Delta-G solvation = -115.232676 kcal Electronic energy + Delta-G solvation = -19467.678708 eV Core-core repulsion = 15747.026766 eV Total energy + Delta-G solvation = -3720.651943 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -51.16207 -48.66797 -48.64161 -40.79475 -37.98858 -36.75209 -34.71840 -32.48847 -31.79517 -28.91408 -26.45310 -25.30913 -23.92930 -22.88019 -20.25739 -19.49411 -19.46969 -18.94633 -18.60286 -17.14366 -16.76890 -16.32790 -15.72325 -15.59792 -15.45966 -15.27314 -15.07004 -14.96425 -14.80404 -14.77851 -14.77297 -14.38588 -14.20658 -14.02339 -13.83456 -13.41747 -12.89008 -12.72061 -12.57044 -12.39299 -12.06872 -11.42941 -11.36752 -10.59388 -10.10351 -8.47091 -8.27602 -6.39416 -0.41159 0.24704 1.40070 1.46644 1.46736 1.54789 1.67256 1.85515 2.33695 2.50802 2.65108 2.67281 2.97136 3.02856 3.09445 3.43686 3.83971 4.14142 4.28842 4.37020 4.73602 4.85368 5.06394 5.17378 5.26161 5.35545 5.47260 5.64586 5.91509 6.21551 6.34522 6.69788 7.02652 7.32604 8.83011 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.003919 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.548779 B = 7143.767112 C = 7739.513389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.262 3.738 3 C 0.064 3.936 4 C -0.147 4.147 5 C 0.247 3.753 6 N -0.714 5.714 7 C 0.262 3.738 8 C -0.559 4.559 9 H 0.072 0.928 10 C 0.015 3.985 11 N -0.921 5.921 12 Si 0.967 3.033 13 H -0.268 1.268 14 H -0.286 1.286 15 H -0.269 1.269 16 C -0.184 4.184 17 C -0.007 4.007 18 C -0.228 4.228 19 C 0.513 3.487 20 F -0.170 7.170 21 F -0.185 7.185 22 F -0.185 7.185 23 H 0.158 0.842 24 H 0.405 0.595 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.268 0.732 28 H 0.134 0.866 29 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.983 -4.726 -5.786 11.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.054 4.054 3 C 0.059 3.941 4 C -0.172 4.172 5 C 0.135 3.865 6 N -0.336 5.336 7 C 0.140 3.860 8 C -0.597 4.597 9 H 0.090 0.910 10 C -0.186 4.186 11 N -0.560 5.560 12 Si 0.792 3.208 13 H -0.193 1.193 14 H -0.211 1.211 15 H -0.194 1.194 16 C -0.208 4.208 17 C -0.026 4.026 18 C -0.234 4.234 19 C 0.459 3.541 20 F -0.152 7.152 21 F -0.166 7.166 22 F -0.166 7.166 23 H 0.176 0.824 24 H 0.241 0.759 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.319 -4.742 -5.808 12.755 hybrid contribution 0.743 0.529 0.641 1.115 sum -9.576 -4.213 -5.167 11.668 Atomic orbital electron populations 1.81210 1.12546 1.08359 1.08116 1.25744 0.92752 0.93429 0.93440 1.15154 0.83162 0.98755 0.97007 1.20578 0.91562 1.03559 1.01517 1.18126 0.90850 0.88972 0.88525 1.45427 1.07221 1.47452 1.33486 1.18803 0.75119 0.95931 0.96182 1.21552 0.92568 1.28570 1.16975 0.91008 1.25749 0.96995 0.97199 0.98608 1.70024 1.03081 1.43029 1.39850 0.85460 0.76989 0.79149 0.79190 1.19334 1.21122 1.19351 1.20999 1.01050 1.01099 0.97612 1.20747 0.90634 0.94795 0.96376 1.19482 0.95052 1.07360 1.01530 1.18224 0.77237 0.78144 0.80498 1.93163 1.66441 1.81424 1.74133 1.93205 1.75172 1.67664 1.80609 1.93204 1.75115 1.71681 1.76640 0.82446 0.75883 0.97404 0.97396 0.92259 0.84770 0.81767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -12.99 18.54 19.00 0.35 -12.63 15 2 C 0.26 7.14 13.17 88.33 1.16 8.31 15 3 C 0.06 1.59 5.71 -21.38 -0.12 1.47 15 4 C -0.15 -3.55 9.60 22.68 0.22 -3.33 15 5 C 0.25 7.06 6.65 38.17 0.25 7.31 15 6 N -0.71 -23.94 5.73 -343.23 -1.97 -25.90 15 7 C 0.26 11.45 4.66 85.63 0.40 11.84 15 8 C -0.56 -26.97 9.28 25.60 0.24 -26.74 15 9 H 0.07 3.26 7.60 -2.92 -0.02 3.24 15 10 C 0.02 0.76 5.46 84.66 0.46 1.22 15 11 N -0.92 -49.29 13.29 21.45 0.28 -49.01 15 12 Si 0.97 39.41 29.54 68.60 2.03 41.43 15 13 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 14 H -0.29 -11.61 7.11 99.48 0.71 -10.90 15 15 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 16 C -0.18 -5.06 9.31 22.45 0.21 -4.85 15 17 C -0.01 -0.15 9.41 22.21 0.21 0.06 15 18 C -0.23 -5.56 5.40 -19.58 -0.11 -5.67 15 19 C 0.51 12.68 2.89 71.24 0.21 12.89 15 20 F -0.17 -3.86 15.97 44.97 0.72 -3.15 15 21 F -0.19 -4.90 16.52 44.97 0.74 -4.16 15 22 F -0.18 -4.90 16.52 44.97 0.74 -4.15 15 23 H 0.16 3.12 8.06 -2.91 -0.02 3.10 15 24 H 0.41 12.22 8.33 -92.71 -0.77 11.45 15 25 H 0.01 0.38 7.93 -2.39 -0.02 0.36 15 26 H 0.01 0.39 7.95 -2.39 -0.02 0.37 15 27 H 0.27 13.66 8.31 -92.71 -0.77 12.89 15 28 H 0.13 4.02 6.71 -2.91 -0.02 4.00 15 29 H 0.16 3.01 7.14 -2.91 -0.02 2.98 15 Total: -1.00 -53.82 280.98 6.49 -47.34 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: 0.45 Total: 7.73 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: 3.13 Total: 2.51 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.33 Total: -87.55 kcal Atomic # 9 Polarization: -13.66 SS G_CDS: 2.20 Total: -11.46 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.43 kcal Total: -53.82 6.49 -47.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362676585.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.897 kcal (2) G-P(sol) polarization free energy of solvation -53.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds