Wall clock time and date at job start Mon Mar 30 2020 01:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43208 * 179.97438 * 2 1 4 4 C 1.39677 * 120.11395 * 215.55372 * 3 2 1 5 5 C 1.37965 * 119.99685 * 179.97438 * 4 3 2 6 6 C 1.38250 * 120.23589 * 359.71511 * 5 4 3 7 7 C 1.50694 * 119.89087 * 180.27785 * 6 5 4 8 8 F 1.39903 * 109.47076 * 0.28333 * 7 6 5 9 9 F 1.39901 * 109.47439 * 120.27926 * 7 6 5 10 10 F 1.39901 * 109.47674 * 240.28417 * 7 6 5 11 11 C 1.38991 * 120.22668 * 0.56417 * 6 5 4 12 12 N 1.39705 * 120.00066 * 179.71701 * 11 6 5 13 13 C 1.46506 * 120.00270 * 179.72437 * 12 11 6 14 14 C 1.50703 * 109.47289 * 179.97438 * 13 12 11 15 15 H 1.07994 * 119.99399 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31518 * 120.00144 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99733 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46632 * 90.00476 * 18 16 14 20 20 H 1.48496 * 109.46690 * 210.00029 * 18 16 14 21 21 H 1.48498 * 109.47171 * 330.00226 * 18 16 14 22 22 C 1.38664 * 119.99930 * 359.44087 * 11 6 5 23 23 H 1.07999 * 120.00143 * 359.97438 * 4 3 2 24 24 H 1.08006 * 119.88692 * 180.02562 * 5 4 3 25 25 H 0.97001 * 120.00479 * 359.72055 * 12 11 6 26 26 H 1.09001 * 109.47060 * 300.00276 * 13 12 11 27 27 H 1.09004 * 109.47073 * 59.99765 * 13 12 11 28 28 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 29 29 H 1.08000 * 120.11620 * 180.25961 * 22 11 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2684 0.9839 0.7026 5 6 4.6481 0.9820 0.7013 6 6 5.3422 0.0056 0.0113 7 6 6.8492 0.0072 0.0204 8 9 7.3097 1.0791 0.7925 9 9 7.3135 -1.1942 0.5665 10 9 7.3234 0.1382 -1.2893 11 6 4.6551 -0.9740 -0.6958 12 7 5.3613 -1.9549 -1.3963 13 6 4.6370 -2.9911 -2.1367 14 6 5.6237 -3.9178 -2.7992 15 1 6.6841 -3.7517 -2.6802 16 6 5.1724 -4.9781 -3.5562 17 7 3.8809 -5.1805 -3.7005 18 14 6.3954 -6.1263 -4.3780 19 1 6.7207 -7.2445 -3.4565 20 1 5.8023 -6.6699 -5.6260 21 1 7.6353 -5.3772 -4.7045 22 6 3.2684 -0.9811 -0.7012 23 1 2.7300 1.7458 1.2467 24 1 5.1878 1.7429 1.2455 25 1 6.3313 -1.9500 -1.3927 26 1 4.0105 -3.5586 -1.4485 27 1 4.0108 -2.5240 -2.8969 28 1 3.5635 -5.9262 -4.2334 29 1 2.7326 -1.7439 -1.2465 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362687895.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:02 Heat of formation + Delta-G solvation = -117.891596 kcal Electronic energy + Delta-G solvation = -19941.697610 eV Core-core repulsion = 16220.930368 eV Total energy + Delta-G solvation = -3720.767242 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -51.13396 -48.62979 -48.58375 -40.80149 -37.91652 -36.72391 -34.70281 -33.18230 -31.08447 -28.51197 -27.46347 -25.17921 -23.70101 -22.56766 -20.43529 -19.42865 -19.41341 -19.36340 -18.46128 -17.09122 -16.59454 -16.24621 -15.64269 -15.60292 -15.52261 -15.28727 -15.01489 -14.96581 -14.90551 -14.80209 -14.73603 -14.56981 -14.12780 -13.78769 -13.73223 -13.44934 -12.93792 -12.77052 -12.52713 -12.44776 -12.06210 -11.48095 -11.27933 -10.62620 -10.22656 -8.51451 -8.32728 -6.45675 -0.50020 0.50707 1.41678 1.41976 1.52257 1.53317 1.73224 1.76501 2.30580 2.54926 2.67936 2.74340 2.97016 3.03785 3.06767 3.48135 3.84141 4.15873 4.31001 4.37158 4.72926 4.88067 5.00825 5.16363 5.25428 5.28692 5.47221 5.66427 5.84549 6.20185 6.34130 6.60728 6.85750 7.26273 8.78336 Molecular weight = 270.07amu Principal moments of inertia in cm(-1) A = 0.014898 B = 0.006629 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.986742 B = 4222.585445 C = 5921.765153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.279 3.721 3 C 0.051 3.949 4 C -0.128 4.128 5 C -0.010 4.010 6 C -0.260 4.260 7 C 0.514 3.486 8 F -0.167 7.167 9 F -0.185 7.185 10 F -0.185 7.185 11 C 0.255 3.745 12 N -0.723 5.723 13 C 0.264 3.736 14 C -0.559 4.559 15 H 0.067 0.933 16 C 0.016 3.984 17 N -0.922 5.922 18 Si 0.971 3.029 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.264 1.264 22 C -0.166 4.166 23 H 0.174 0.826 24 H 0.178 0.822 25 H 0.397 0.603 26 H 0.006 0.994 27 H 0.006 0.994 28 H 0.269 0.731 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.631 12.978 9.280 16.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.036 4.036 3 C 0.047 3.953 4 C -0.150 4.150 5 C -0.028 4.028 6 C -0.268 4.268 7 C 0.460 3.540 8 F -0.148 7.148 9 F -0.167 7.167 10 F -0.167 7.167 11 C 0.144 3.856 12 N -0.346 5.346 13 C 0.142 3.858 14 C -0.597 4.597 15 H 0.085 0.915 16 C -0.185 4.185 17 N -0.561 5.561 18 Si 0.795 3.205 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.188 1.188 22 C -0.192 4.192 23 H 0.192 0.808 24 H 0.195 0.805 25 H 0.232 0.768 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.078 0.922 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.680 12.657 9.046 15.787 hybrid contribution 1.330 -1.154 -0.813 1.939 sum 4.010 11.503 8.233 14.703 Atomic orbital electron populations 1.81240 1.12999 1.08950 1.09169 1.25750 0.92631 0.92541 0.92676 1.15864 0.83356 0.96946 0.99167 1.21097 0.93187 0.99203 1.01551 1.20960 0.93863 0.94742 0.93229 1.19698 0.90331 1.04104 1.12645 1.18201 0.88877 0.73533 0.73424 1.93151 1.90470 1.55910 1.75312 1.93215 1.90642 1.46919 1.85888 1.93215 1.90352 1.95477 1.37635 1.17561 0.91553 0.87396 0.89048 1.45527 1.08781 1.28283 1.52012 1.18790 0.92368 0.84796 0.89849 1.21516 0.93661 1.12274 1.32219 0.91472 1.25783 0.97202 0.98971 0.96496 1.70043 1.14641 1.31035 1.40355 0.85356 0.78744 0.78590 0.77820 1.19742 1.20626 1.18811 1.20584 0.91721 1.01735 1.05179 0.80815 0.80473 0.76758 0.97592 0.97584 0.92162 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.97 18.54 19.01 0.35 -13.61 15 2 C 0.28 7.58 15.33 88.33 1.35 8.94 15 3 C 0.05 1.25 5.73 -21.38 -0.12 1.13 15 4 C -0.13 -2.23 9.75 22.55 0.22 -2.01 15 5 C -0.01 -0.18 9.41 22.21 0.21 0.03 15 6 C -0.26 -6.77 5.39 -19.68 -0.11 -6.87 15 7 C 0.51 13.58 2.80 71.23 0.20 13.78 15 8 F -0.17 -3.65 15.96 44.97 0.72 -2.93 15 9 F -0.19 -5.46 16.24 44.97 0.73 -4.73 15 10 F -0.19 -5.46 16.22 44.97 0.73 -4.73 15 11 C 0.26 8.36 6.54 38.17 0.25 8.61 15 12 N -0.72 -28.69 5.46 -343.22 -1.88 -30.57 15 13 C 0.26 12.87 4.66 85.63 0.40 13.27 15 14 C -0.56 -29.43 9.28 25.60 0.24 -29.19 15 15 H 0.07 3.41 7.60 -2.91 -0.02 3.39 15 16 C 0.02 0.85 5.46 84.65 0.46 1.32 15 17 N -0.92 -52.14 13.29 21.45 0.28 -51.86 15 18 Si 0.97 41.74 29.54 68.60 2.03 43.77 15 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 15 21 H -0.26 -10.92 7.11 99.48 0.71 -10.22 15 22 C -0.17 -5.23 9.01 22.68 0.20 -5.03 15 23 H 0.17 1.77 8.06 -2.91 -0.02 1.75 15 24 H 0.18 1.99 7.14 -2.91 -0.02 1.97 15 25 H 0.40 15.40 5.72 -92.71 -0.53 14.86 15 26 H 0.01 0.33 7.95 -2.39 -0.02 0.31 15 27 H 0.01 0.33 7.95 -2.38 -0.02 0.31 15 28 H 0.27 14.36 8.31 -92.71 -0.77 13.59 15 29 H 0.12 4.40 6.73 -2.91 -0.02 4.39 15 Total: -1.00 -59.16 279.36 6.97 -52.19 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 0.70 Total: 8.51 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 3.31 Total: 3.97 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -1.24 Total: -96.04 kcal Atomic # 9 Polarization: -14.58 SS G_CDS: 2.18 Total: -12.40 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -59.16 6.97 -52.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362687895.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.701 kcal (2) G-P(sol) polarization free energy of solvation -59.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds