Wall clock time and date at job start Mon Mar 30 2020 00:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47405 * 240.00267 * 3 2 1 5 5 H 1.48506 * 109.47027 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47090 * 120.00272 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.38241 * 119.99281 * 259.99823 * 12 11 10 14 14 C 1.38323 * 119.98586 * 179.97438 * 13 12 11 15 15 Cl 1.73604 * 120.01264 * 179.97438 * 14 13 12 16 16 C 1.38377 * 119.97418 * 359.97438 * 14 13 12 17 17 C 1.38193 * 119.98778 * 0.02562 * 16 14 13 18 18 C 1.38216 * 119.99191 * 79.72219 * 12 11 10 19 19 N 1.48012 * 119.98808 * 359.97438 * 18 12 11 20 20 O 1.21809 * 120.00144 * 179.97438 * 19 18 12 21 21 O 1.21796 * 120.00040 * 0.02562 * 19 18 12 22 22 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 23 23 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 24 24 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 25 25 H 1.00908 * 110.99583 * 303.94914 * 10 9 7 26 26 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 27 27 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 28 28 H 1.07999 * 120.00276 * 359.95449 * 13 12 11 29 29 H 1.08000 * 120.00461 * 180.02562 * 16 14 13 30 30 H 1.07999 * 119.99518 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5148 -6.0259 -0.0018 13 6 2.8233 -6.6777 -1.1812 14 6 3.7503 -7.7044 -1.1817 15 17 4.1377 -8.5238 -2.6623 16 6 4.3688 -8.0780 -0.0016 17 6 4.0596 -7.4257 1.1769 18 6 3.1363 -6.3964 1.1759 19 7 2.8105 -5.6937 2.4372 20 8 3.3577 -6.0204 3.4752 21 8 1.9946 -4.7895 2.4373 22 1 -0.4850 0.8400 0.0004 23 1 0.6240 -2.5567 -0.8902 24 1 0.6247 -2.5571 0.8897 25 1 2.8404 -3.5486 -0.7820 26 1 0.8801 -4.9817 0.8886 27 1 0.8807 -4.9812 -0.8913 28 1 2.3403 -6.3856 -2.1020 29 1 5.0929 -8.8792 -0.0014 30 1 4.5419 -7.7175 2.0981 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379467652.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:47 Heat of formation + Delta-G solvation = 2.656903 kcal Electronic energy + Delta-G solvation = -17940.760233 eV Core-core repulsion = 14764.644256 eV Total energy + Delta-G solvation = -3176.115976 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.18372 -40.72441 -38.02443 -37.63387 -36.88669 -34.73917 -32.83752 -32.75962 -29.21844 -27.53357 -26.04046 -23.88149 -23.48050 -22.88071 -20.10444 -19.49220 -18.68744 -18.44482 -17.72624 -17.18105 -16.70534 -16.00488 -15.84578 -15.46592 -14.89435 -14.62912 -14.31151 -13.94743 -13.56455 -13.34992 -13.01860 -12.86937 -12.62030 -12.58448 -12.46287 -12.16302 -12.08726 -12.03353 -11.57160 -11.34398 -10.63539 -10.45292 -10.33610 -9.14681 -8.20381 -6.30920 -1.30817 -0.24055 0.20461 0.43960 0.77688 1.41110 1.45370 1.52942 2.02767 2.41508 3.12176 3.13252 3.24471 3.57095 3.64687 3.77802 4.01059 4.20223 4.45314 4.48619 4.62389 4.73796 4.80750 5.07128 5.10880 5.31115 5.44367 5.59938 6.02112 6.39459 6.59601 6.67485 6.87799 7.38972 8.91052 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.020421 B = 0.004803 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.781115 B = 5828.826553 C = 6697.901515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.060 0.940 9 C 0.218 3.782 10 N -0.673 5.673 11 C 0.081 3.919 12 C -0.006 4.006 13 C -0.107 4.107 14 C 0.017 3.983 15 Cl -0.028 7.028 16 C -0.097 4.097 17 C -0.038 4.038 18 C -0.044 4.044 19 N 0.029 4.971 20 O -0.174 6.174 21 O -0.173 6.173 22 H 0.265 0.735 23 H -0.032 1.032 24 H 0.003 0.997 25 H 0.332 0.668 26 H 0.088 0.912 27 H 0.048 0.952 28 H 0.167 0.833 29 H 0.194 0.806 30 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.640 -20.835 -4.392 23.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.078 0.922 9 C 0.090 3.910 10 N -0.303 5.303 11 C -0.048 4.048 12 C -0.009 4.009 13 C -0.126 4.126 14 C -0.011 4.011 15 Cl 0.001 6.999 16 C -0.116 4.116 17 C -0.057 4.057 18 C -0.128 4.128 19 N 0.544 4.456 20 O -0.389 6.389 21 O -0.384 6.384 22 H 0.074 0.926 23 H -0.015 1.015 24 H 0.021 0.979 25 H 0.149 0.851 26 H 0.106 0.894 27 H 0.066 0.934 28 H 0.184 0.816 29 H 0.212 0.788 30 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 9.726 -21.090 -4.435 23.644 hybrid contribution -0.534 1.235 -0.493 1.433 sum 9.191 -19.855 -4.928 22.427 Atomic orbital electron populations 1.70075 1.07692 1.28030 1.51391 1.25892 0.95767 1.03163 0.94595 0.85420 0.78160 0.77892 0.79006 1.18949 1.20609 1.19797 1.21452 0.93581 0.91507 1.50783 0.92192 1.19130 0.90336 0.87975 0.93527 1.60472 1.20684 1.00413 1.48773 1.21208 0.93831 0.87315 1.02464 1.19757 0.94886 0.95215 0.90995 1.21164 0.98380 0.95272 0.97834 1.21377 0.95938 0.94062 0.89681 1.98434 1.92680 1.76806 1.31949 1.21436 1.00681 1.01351 0.88117 1.21313 0.92221 0.90300 1.01826 1.21263 1.06693 1.01110 0.83763 1.43898 0.99073 0.99801 1.02866 1.94423 1.52773 1.69605 1.22087 1.94706 1.28697 1.21962 1.93068 0.92596 1.01473 0.97925 0.85149 0.89370 0.93418 0.81563 0.78840 0.80123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.53 -31.22 9.32 25.60 0.24 -30.98 16 8 H 0.06 3.42 7.81 -2.91 -0.02 3.39 16 9 C 0.22 11.88 5.44 85.55 0.47 12.35 16 10 N -0.67 -29.49 5.71 -521.98 -2.98 -32.47 16 11 C 0.08 2.88 4.83 85.56 0.41 3.29 16 12 C -0.01 -0.18 5.39 -19.87 -0.11 -0.28 16 13 C -0.11 -2.16 9.45 22.29 0.21 -1.94 16 14 C 0.02 0.26 6.32 22.32 0.14 0.40 16 15 Cl -0.03 -0.37 28.96 -2.72 -0.08 -0.45 16 16 C -0.10 -1.24 9.83 22.29 0.22 -1.02 16 17 C -0.04 -0.68 9.55 22.27 0.21 -0.47 16 18 C -0.04 -1.23 6.85 36.38 0.25 -0.98 16 19 N 0.03 1.06 4.45 -46.46 -0.21 0.85 16 20 O -0.17 -6.05 18.45 18.88 0.35 -5.71 16 21 O -0.17 -7.55 14.74 18.89 0.28 -7.27 16 22 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 23 H -0.03 -1.84 8.14 -2.39 -0.02 -1.86 16 24 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 25 H 0.33 13.49 8.71 -89.69 -0.78 12.71 16 26 H 0.09 3.52 5.90 -2.39 -0.01 3.51 16 27 H 0.05 1.56 8.00 -2.39 -0.02 1.54 16 28 H 0.17 2.88 8.04 -2.91 -0.02 2.86 16 29 H 0.19 0.99 8.06 -2.91 -0.02 0.96 16 30 H 0.18 2.53 7.61 -2.91 -0.02 2.50 16 Total: -1.00 -70.65 287.62 2.58 -68.07 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.40 Total: 5.51 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 2.50 Total: -18.93 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -2.90 Total: -88.45 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.63 Total: -12.98 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -70.65 2.58 -68.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379467652.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.727 kcal (2) G-P(sol) polarization free energy of solvation -70.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds