Wall clock time and date at job start Mon Mar 30 2020 00:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00144 * 2 1 4 4 H 1.48501 * 109.46661 * 239.99803 * 3 2 1 5 5 H 1.48495 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47144 * 119.99719 * 3 2 1 7 7 C 1.37881 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99723 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99898 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46639 * 180.02562 * 9 7 2 11 11 O 1.45208 * 109.46749 * 179.97438 * 10 9 7 12 12 C 1.34718 * 116.99556 * 179.97438 * 11 10 9 13 13 O 1.21473 * 120.00327 * 359.97438 * 12 11 10 14 14 C 1.47678 * 119.99688 * 180.02562 * 12 11 10 15 15 C 1.39605 * 120.51252 * 359.97438 * 14 12 11 16 16 N 1.31669 * 120.72951 * 180.02562 * 15 14 12 17 17 C 1.31981 * 121.95307 * 359.97438 * 16 15 14 18 18 Cl 1.73594 * 119.52163 * 180.02562 * 17 16 15 19 19 C 1.39177 * 120.95945 * 0.02562 * 17 16 15 20 20 N 1.39810 * 120.42592 * 179.97438 * 19 17 16 21 21 C 1.38921 * 119.15209 * 359.97438 * 19 17 16 22 22 H 0.96995 * 119.99895 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47213 * 59.99931 * 9 7 2 24 24 H 1.08999 * 109.46727 * 299.99313 * 9 7 2 25 25 H 1.08997 * 109.47437 * 59.99991 * 10 9 7 26 26 H 1.08996 * 109.47316 * 299.99774 * 10 9 7 27 27 H 1.07993 * 119.63879 * 359.74630 * 15 14 12 28 28 H 0.96998 * 120.00074 * 180.02562 * 20 19 17 29 29 H 0.97003 * 120.00077 * 0.02562 * 20 19 17 30 30 H 1.08001 * 120.88334 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 8 1.5191 -4.9196 0.0024 12 6 2.2529 -6.0495 0.0031 13 8 3.4659 -5.9859 0.0026 14 6 1.5824 -7.3653 0.0031 15 6 0.1890 -7.4508 0.0031 16 7 -0.4133 -8.6216 0.0037 17 6 0.2631 -9.7550 0.0038 18 17 -0.5957 -11.2636 0.0039 19 6 1.6548 -9.7582 0.0038 20 7 2.3601 -10.9653 0.0045 21 6 2.3343 -8.5465 0.0032 22 1 -0.4850 0.8400 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8712 -3.6040 0.8922 26 1 2.8725 -3.6048 -0.8877 27 1 -0.4016 -6.5466 0.0072 28 1 3.3301 -10.9604 0.0049 29 1 1.8794 -11.8079 0.0046 30 1 3.4139 -8.5163 0.0028 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390163648.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:54:15 Heat of formation + Delta-G solvation = -87.872719 kcal Electronic energy + Delta-G solvation = -17205.406252 eV Core-core repulsion = 14025.364617 eV Total energy + Delta-G solvation = -3180.041635 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.95484 -40.82948 -37.87315 -37.66998 -36.39850 -35.42550 -33.51654 -32.23221 -30.28074 -27.39518 -25.84914 -24.57633 -23.08569 -22.16561 -19.52759 -18.91679 -18.53663 -18.18900 -17.58343 -17.57767 -16.84809 -16.44131 -16.10051 -15.88647 -15.00530 -14.67955 -14.40574 -14.34775 -13.96783 -13.18283 -13.06199 -12.84374 -12.63389 -12.62963 -12.56340 -12.49711 -12.04943 -11.59231 -11.47856 -11.43095 -10.87493 -10.80014 -10.57972 -8.89742 -8.24509 -6.37513 -0.80288 0.08873 0.62577 1.31196 1.41937 1.46508 1.51584 1.57849 2.41315 2.50786 2.57667 3.10183 3.24831 3.50278 3.65111 3.72587 4.06097 4.23164 4.25877 4.37871 4.71687 4.84890 5.11792 5.22717 5.48484 5.50499 5.75605 6.07686 6.08819 6.47891 6.61149 6.70880 6.76404 7.32132 8.87790 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.046927 B = 0.003161 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.528378 B = 8855.322336 C = 9431.404611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.006 3.994 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.029 3.971 10 C 0.091 3.909 11 O -0.354 6.354 12 C 0.511 3.489 13 O -0.527 6.527 14 C -0.125 4.125 15 C 0.112 3.888 16 N -0.459 5.459 17 C 0.111 3.889 18 Cl -0.014 7.014 19 C 0.192 3.808 20 N -0.842 5.842 21 C -0.080 4.080 22 H 0.267 0.733 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.180 0.820 28 H 0.420 0.580 29 H 0.413 0.587 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.701 -24.011 0.015 24.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.085 0.915 9 C -0.008 4.008 10 C 0.018 3.982 11 O -0.270 6.270 12 C 0.356 3.644 13 O -0.418 6.418 14 C -0.129 4.129 15 C -0.049 4.049 16 N -0.169 5.169 17 C -0.059 4.059 18 Cl 0.014 6.986 19 C 0.080 3.920 20 N -0.384 5.384 21 C -0.111 4.111 22 H 0.076 0.924 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.197 0.803 28 H 0.252 0.748 29 H 0.245 0.755 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.915 -24.031 0.015 24.207 hybrid contribution 1.111 0.701 -0.001 1.314 sum 4.026 -23.329 0.014 23.674 Atomic orbital electron populations 1.70088 1.07800 1.28302 1.50377 1.25948 0.95809 1.03357 0.94152 0.85397 0.78187 0.77552 0.79305 1.19056 1.20667 1.19046 1.21356 0.93769 0.91200 1.52484 0.91534 1.18996 0.94404 0.90464 0.96925 1.23265 0.95098 0.78326 1.01470 1.86558 1.41967 1.15553 1.82905 1.21170 0.85378 0.85436 0.72424 1.90792 1.15634 1.88459 1.46925 1.19939 0.95180 0.90469 1.07315 1.22883 0.90825 0.94997 0.96149 1.66938 1.40649 0.97521 1.11768 1.21592 0.87778 0.89578 1.06960 1.98388 1.77851 1.25761 1.96567 1.17944 0.89440 0.88885 0.95688 1.42449 1.10150 1.03589 1.82233 1.21238 1.01934 0.87984 0.99947 0.92377 0.97312 0.97320 0.91697 0.91690 0.80273 0.74772 0.75454 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 13.29 21.45 0.28 -54.87 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.97 43.18 29.54 68.60 2.03 45.21 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -30.70 9.11 25.60 0.23 -30.46 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.03 1.54 5.35 29.85 0.16 1.70 16 10 C 0.09 3.96 5.41 71.98 0.39 4.35 16 11 O -0.35 -13.67 9.49 -56.28 -0.53 -14.21 16 12 C 0.51 17.27 7.90 70.32 0.56 17.83 16 13 O -0.53 -19.51 16.21 19.92 0.32 -19.19 16 14 C -0.12 -3.34 5.89 -20.02 -0.12 -3.46 16 15 C 0.11 2.99 10.78 85.05 0.92 3.90 16 16 N -0.46 -11.92 10.31 -185.09 -1.91 -13.83 16 17 C 0.11 2.37 7.29 84.90 0.62 2.99 16 18 Cl -0.01 -0.24 27.74 -2.72 -0.08 -0.32 16 19 C 0.19 3.35 6.77 38.26 0.26 3.61 16 20 N -0.84 -7.93 9.05 -51.12 -0.46 -8.39 16 21 C -0.08 -1.65 9.58 22.87 0.22 -1.43 16 22 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 23 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 24 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.18 4.75 7.61 -2.91 -0.02 4.73 16 28 H 0.42 2.02 8.85 -92.71 -0.82 1.19 16 29 H 0.41 2.96 7.51 -92.71 -0.70 2.27 16 30 H 0.17 2.98 7.73 -2.91 -0.02 2.95 16 Total: -1.00 -66.38 290.81 3.04 -63.34 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -0.31 Total: 2.42 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 3.70 Total: -0.16 kcal Atomic # 7 Polarization: -75.01 SS G_CDS: -2.09 Total: -77.10 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.21 Total: -33.39 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.08 Total: -0.32 kcal Total: -66.38 3.04 -63.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390163648.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.529 kcal (2) G-P(sol) polarization free energy of solvation -66.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds