Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47101 * 239.99578 * 3 2 1 5 5 H 1.48494 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47257 * 119.99931 * 3 2 1 7 7 C 1.37878 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46868 * 179.97438 * 9 7 2 11 11 O 1.45204 * 109.46893 * 180.02562 * 10 9 7 12 12 C 1.34725 * 117.00156 * 179.97438 * 11 10 9 13 13 O 1.21489 * 119.99464 * 359.73558 * 12 11 10 14 14 C 1.47599 * 120.00342 * 180.02562 * 12 11 10 15 15 C 1.40099 * 120.97773 * 5.55026 * 14 12 11 16 16 C 1.37842 * 119.11628 * 179.79570 * 15 14 12 17 17 N 1.31989 * 121.15780 * 0.49309 * 16 15 14 18 18 C 1.31618 * 122.17722 * 359.74025 * 17 16 15 19 19 Cl 1.73601 * 119.63399 * 180.02562 * 18 17 16 20 20 C 1.39384 * 120.73665 * 0.02562 * 18 17 16 21 21 N 1.38896 * 120.61980 * 180.02562 * 20 18 17 22 22 H 0.97001 * 119.99483 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46970 * 60.00413 * 9 7 2 24 24 H 1.09000 * 109.47927 * 300.00282 * 9 7 2 25 25 H 1.08999 * 109.47147 * 60.00960 * 10 9 7 26 26 H 1.08993 * 109.46949 * 300.00176 * 10 9 7 27 27 H 1.08006 * 120.44047 * 0.02593 * 15 14 12 28 28 H 1.07997 * 119.41677 * 180.25136 * 16 15 14 29 29 H 0.96994 * 120.00186 * 198.34427 * 21 20 18 30 30 H 0.97005 * 119.99574 * 18.34399 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 8 1.5192 -4.9196 0.0020 12 6 2.2529 -6.0495 0.0013 13 8 3.4661 -5.9859 -0.0046 14 6 1.5828 -7.3646 0.0012 15 6 0.1901 -7.4643 -0.1144 16 6 -0.3953 -8.7123 -0.1145 17 7 0.3318 -9.8077 0.0018 18 6 1.6423 -9.7700 0.1179 19 17 2.5339 -11.2522 0.2663 20 6 2.3224 -8.5533 0.1231 21 7 3.7055 -8.5164 0.2453 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 2.8725 -3.6041 0.8910 26 1 2.8712 -3.6047 -0.8890 27 1 -0.4164 -6.5753 -0.2060 28 1 -1.4681 -8.7949 -0.2074 29 1 4.1470 -7.6953 0.5129 30 1 4.2298 -9.3119 0.0629 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393797216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = -65.013288 kcal Electronic energy + Delta-G solvation = -17481.051810 eV Core-core repulsion = 14302.001434 eV Total energy + Delta-G solvation = -3179.050376 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.94100 -39.52163 -36.88032 -36.59462 -35.13140 -33.47012 -32.49633 -30.31566 -29.34566 -25.84381 -24.57404 -23.25267 -21.56236 -20.86118 -18.43737 -17.65286 -17.23655 -16.90271 -16.20990 -16.02052 -15.38887 -15.27049 -14.70330 -14.57884 -14.38781 -13.41166 -13.04599 -12.56497 -12.38740 -11.96558 -11.66743 -11.52222 -11.34270 -11.15781 -10.87319 -10.82908 -10.63659 -9.95593 -9.85237 -9.72255 -9.66360 -9.39108 -8.50128 -8.06267 -6.16328 -4.21274 0.40125 0.89528 1.55060 2.55952 2.89639 3.26122 3.30693 3.33575 3.43749 3.52129 4.31500 4.36399 4.43765 4.64182 4.90751 5.11503 5.20431 5.48865 5.70167 5.92917 5.96919 6.15291 6.51400 6.67897 6.95207 7.42473 7.48254 7.53252 7.53916 7.77567 7.97105 8.15993 8.83793 9.43546 10.95047 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.048155 B = 0.003389 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.312496 B = 8260.941044 C = 8816.553720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.076 3.924 11 O -0.345 6.345 12 C 0.516 3.484 13 O -0.519 6.519 14 C -0.157 4.157 15 C -0.055 4.055 16 C 0.040 3.960 17 N -0.417 5.417 18 C 0.091 3.909 19 Cl -0.032 7.032 20 C 0.248 3.752 21 N -0.839 5.839 22 H 0.265 0.735 23 H 0.029 0.971 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.420 0.580 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -18.988 0.243 19.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.261 6.261 12 C 0.361 3.639 13 O -0.410 6.410 14 C -0.171 4.171 15 C -0.075 4.075 16 C -0.117 4.117 17 N -0.128 5.128 18 C -0.082 4.082 19 Cl -0.004 7.004 20 C 0.132 3.868 21 N -0.384 5.384 22 H 0.074 0.926 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.179 0.821 28 H 0.189 0.811 29 H 0.260 0.740 30 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 2.249 -19.640 0.264 19.771 hybrid contribution 1.391 1.585 0.021 2.109 sum 3.640 -18.055 0.285 18.421 Atomic orbital electron populations 1.69957 1.06095 1.27210 1.49458 1.24975 0.94928 0.99400 0.94751 0.86521 0.79493 0.82423 0.78803 1.20047 1.21076 1.20044 1.20917 0.93144 0.90052 1.52640 0.92285 1.19182 0.94165 0.88861 0.99004 1.23763 0.96533 0.78144 1.01208 1.86578 1.41743 1.15478 1.82256 1.20612 0.85291 0.85100 0.72856 1.90597 1.15079 1.87746 1.47592 1.19054 0.94270 0.89747 1.14029 1.22536 0.93167 1.00575 0.91233 1.22339 1.00152 0.85940 1.03275 1.66601 1.04979 1.33865 1.07336 1.20963 0.89885 0.85881 1.11475 1.98377 1.72248 1.33410 1.96373 1.18172 0.86143 0.91274 0.91195 1.43019 1.02716 1.18772 1.73899 0.92570 0.95233 0.95235 0.92024 0.91999 0.82088 0.81129 0.74045 0.76771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.63 5.35 -27.88 -0.15 0.48 16 10 C 0.08 1.59 5.41 37.16 0.20 1.79 16 11 O -0.35 -6.42 9.59 -40.56 -0.39 -6.81 16 12 C 0.52 8.57 7.89 34.55 0.27 8.84 16 13 O -0.52 -9.13 13.71 -19.26 -0.26 -9.40 16 14 C -0.16 -2.15 5.92 -104.52 -0.62 -2.77 16 15 C -0.05 -0.63 9.69 -39.03 -0.38 -1.01 16 16 C 0.04 0.42 11.15 -17.63 -0.20 0.22 16 17 N -0.42 -5.12 10.30 -10.24 -0.11 -5.23 16 18 C 0.09 1.11 7.30 -17.22 -0.13 0.98 16 19 Cl -0.03 -0.33 27.87 -51.86 -1.45 -1.78 16 20 C 0.25 3.13 6.80 -83.37 -0.57 2.56 16 21 N -0.84 -9.30 8.57 32.67 0.28 -9.02 16 22 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 27 H 0.16 1.68 7.72 -52.48 -0.41 1.28 16 28 H 0.17 1.24 8.06 -52.49 -0.42 0.81 16 29 H 0.42 5.12 5.99 -40.82 -0.24 4.87 16 30 H 0.40 3.53 7.74 -40.82 -0.32 3.21 16 LS Contribution 286.40 15.07 4.32 4.32 Total: -1.00 -29.86 286.40 -6.48 -36.34 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -2.62 Total: 2.70 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -1.97 Total: -2.05 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.91 Total: -39.22 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.65 Total: -16.20 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -1.45 Total: -1.78 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.86 -6.48 -36.34 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393797216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.673 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds