Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48503 * 109.47101 * 239.99578 * 3 2 1 5 5 H 1.48494 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47257 * 119.99931 * 3 2 1 7 7 C 1.37878 * 119.99855 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00066 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.53009 * 109.46868 * 179.97438 * 9 7 2 11 11 O 1.45204 * 109.46893 * 180.02562 * 10 9 7 12 12 C 1.34725 * 117.00156 * 179.97438 * 11 10 9 13 13 O 1.21489 * 119.99464 * 359.73558 * 12 11 10 14 14 C 1.47599 * 120.00342 * 180.02562 * 12 11 10 15 15 C 1.40099 * 120.97773 * 5.55026 * 14 12 11 16 16 C 1.37842 * 119.11628 * 179.79570 * 15 14 12 17 17 N 1.31989 * 121.15780 * 0.49309 * 16 15 14 18 18 C 1.31618 * 122.17722 * 359.74025 * 17 16 15 19 19 Cl 1.73601 * 119.63399 * 180.02562 * 18 17 16 20 20 C 1.39384 * 120.73665 * 0.02562 * 18 17 16 21 21 N 1.38896 * 120.61980 * 180.02562 * 20 18 17 22 22 H 0.97001 * 119.99483 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46970 * 60.00413 * 9 7 2 24 24 H 1.09000 * 109.47927 * 300.00282 * 9 7 2 25 25 H 1.08999 * 109.47147 * 60.00960 * 10 9 7 26 26 H 1.08993 * 109.46949 * 300.00176 * 10 9 7 27 27 H 1.08006 * 120.44047 * 0.02593 * 15 14 12 28 28 H 1.07997 * 119.41677 * 180.25136 * 16 15 14 29 29 H 0.96994 * 120.00186 * 198.34427 * 21 20 18 30 30 H 0.97005 * 119.99574 * 18.34399 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2453 -3.6621 0.0015 11 8 1.5192 -4.9196 0.0020 12 6 2.2529 -6.0495 0.0013 13 8 3.4661 -5.9859 -0.0046 14 6 1.5828 -7.3646 0.0012 15 6 0.1901 -7.4643 -0.1144 16 6 -0.3953 -8.7123 -0.1145 17 7 0.3318 -9.8077 0.0018 18 6 1.6423 -9.7700 0.1179 19 17 2.5339 -11.2522 0.2663 20 6 2.3224 -8.5533 0.1231 21 7 3.7055 -8.5164 0.2453 22 1 -0.4849 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 2.8725 -3.6041 0.8910 26 1 2.8712 -3.6047 -0.8890 27 1 -0.4164 -6.5753 -0.2060 28 1 -1.4681 -8.7949 -0.2074 29 1 4.1470 -7.6953 0.5129 30 1 4.2298 -9.3119 0.0629 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393797216.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = -83.939281 kcal Electronic energy + Delta-G solvation = -17481.872502 eV Core-core repulsion = 14302.001434 eV Total energy + Delta-G solvation = -3179.871068 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 270.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.05978 -40.73467 -37.96901 -37.74563 -36.16694 -35.45615 -33.57943 -32.18386 -30.28142 -27.44426 -26.01983 -24.24344 -23.11547 -22.40020 -19.59510 -18.75656 -18.55320 -18.14193 -17.81666 -17.52507 -16.68207 -16.34467 -16.23515 -15.68236 -15.30154 -15.00388 -14.53672 -14.35895 -13.52154 -13.20581 -13.04920 -12.81850 -12.61524 -12.59888 -12.53367 -12.37233 -12.06613 -11.65025 -11.51748 -11.44940 -10.85447 -10.71588 -10.59661 -8.96897 -8.26483 -6.39381 -0.63478 -0.01602 0.64644 1.34130 1.41542 1.45142 1.51699 1.59430 2.40180 2.52226 2.56007 3.08409 3.36041 3.46697 3.57007 3.96813 4.14469 4.22572 4.25610 4.47190 4.69831 4.82625 5.16816 5.32722 5.44785 5.47919 5.72717 6.02734 6.06921 6.51836 6.59695 6.63062 6.74291 7.30421 8.85713 Molecular weight = 270.06amu Principal moments of inertia in cm(-1) A = 0.048155 B = 0.003389 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.312496 B = 8260.941044 C = 8816.553720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.552 4.552 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.092 3.908 11 O -0.351 6.351 12 C 0.515 3.485 13 O -0.532 6.532 14 C -0.176 4.176 15 C -0.050 4.050 16 C 0.048 3.952 17 N -0.427 5.427 18 C 0.084 3.916 19 Cl -0.017 7.017 20 C 0.245 3.755 21 N -0.833 5.833 22 H 0.268 0.732 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.170 0.830 28 H 0.206 0.794 29 H 0.417 0.583 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.741 -19.570 0.213 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.589 4.589 8 H 0.084 0.916 9 C -0.006 4.006 10 C 0.019 3.981 11 O -0.267 6.267 12 C 0.362 3.638 13 O -0.424 6.424 14 C -0.190 4.190 15 C -0.071 4.071 16 C -0.109 4.109 17 N -0.138 5.138 18 C -0.089 4.089 19 Cl 0.011 6.989 20 C 0.129 3.871 21 N -0.378 5.378 22 H 0.077 0.923 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.188 0.812 28 H 0.223 0.777 29 H 0.255 0.745 30 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 2.638 -20.265 0.232 20.437 hybrid contribution 1.248 1.636 0.033 2.058 sum 3.886 -18.629 0.265 19.032 Atomic orbital electron populations 1.70077 1.07745 1.28327 1.50287 1.25921 0.95810 1.03283 0.94117 0.85415 0.78222 0.77643 0.79276 1.19118 1.20609 1.19096 1.21347 0.93743 0.91242 1.52600 0.91636 1.18984 0.94363 0.90369 0.96934 1.23263 0.95131 0.78320 1.01384 1.86545 1.41775 1.15382 1.82948 1.21067 0.85286 0.85263 0.72218 1.90589 1.15614 1.87899 1.48253 1.18979 0.95302 0.88373 1.16377 1.22709 0.92325 1.01587 0.90465 1.22879 1.01539 0.84902 1.01535 1.66714 1.05056 1.34560 1.07438 1.21086 0.90079 0.86312 1.11414 1.98379 1.71929 1.32319 1.96277 1.18205 0.86575 0.91149 0.91206 1.42986 1.02400 1.19042 1.73333 0.92336 0.97270 0.97285 0.91736 0.91834 0.81222 0.77699 0.74539 0.75546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.09 13.29 21.45 0.28 -53.81 16 2 C 0.01 0.44 5.46 84.65 0.46 0.90 16 3 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.55 -30.27 9.11 25.60 0.23 -30.04 16 8 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.57 5.35 29.85 0.16 1.73 16 10 C 0.09 3.88 5.41 71.99 0.39 4.27 16 11 O -0.35 -13.08 9.59 -56.35 -0.54 -13.62 16 12 C 0.51 16.94 7.89 70.29 0.55 17.50 16 13 O -0.53 -18.56 13.71 19.87 0.27 -18.28 16 14 C -0.18 -4.69 5.92 -19.80 -0.12 -4.81 16 15 C -0.05 -1.09 9.69 22.63 0.22 -0.87 16 16 C 0.05 0.89 11.15 84.58 0.94 1.84 16 17 N -0.43 -9.60 10.30 -186.32 -1.92 -11.52 16 18 C 0.08 1.91 7.30 85.00 0.62 2.53 16 19 Cl -0.02 -0.33 27.87 -2.72 -0.08 -0.40 16 20 C 0.25 5.91 6.80 38.86 0.26 6.17 16 21 N -0.83 -17.69 8.57 -50.55 -0.43 -18.13 16 22 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 23 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 24 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.06 2.64 8.13 -2.39 -0.02 2.62 16 27 H 0.17 3.33 7.72 -2.91 -0.02 3.31 16 28 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 29 H 0.42 9.88 5.99 -92.71 -0.56 9.33 16 30 H 0.41 6.76 7.74 -92.70 -0.72 6.04 16 Total: -1.00 -63.14 286.40 3.28 -59.87 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -0.07 Total: 12.08 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 3.73 Total: -0.78 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -2.07 Total: -83.45 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -0.27 Total: -31.90 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 17 Polarization: -0.33 SS G_CDS: -0.08 Total: -0.40 kcal Total: -63.14 3.28 -59.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393797216.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.070 kcal (2) G-P(sol) polarization free energy of solvation -63.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds