Wall clock time and date at job start Mon Mar 30 2020 01:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47364 * 179.72558 * 9 7 5 11 11 H 1.48508 * 109.46883 * 299.72681 * 9 7 5 12 12 H 1.48497 * 109.46870 * 59.72491 * 9 7 5 13 13 S 1.81393 * 109.47041 * 120.00602 * 2 1 3 14 14 C 1.81396 * 103.00113 * 294.99698 * 13 2 1 15 15 C 1.50699 * 109.47496 * 179.97438 * 14 13 2 16 16 C 1.38244 * 120.00317 * 90.00247 * 15 14 13 17 17 C 1.38225 * 120.00877 * 180.02562 * 16 15 14 18 18 C 1.38261 * 120.02810 * 359.97438 * 17 16 15 19 19 C 1.38196 * 120.01418 * 359.97438 * 18 17 16 20 20 C 1.38330 * 120.01064 * 269.73032 * 15 14 13 21 21 Cl 1.73608 * 120.00981 * 359.97194 * 20 15 14 22 22 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 23 23 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 24 24 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 26 26 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 27 27 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 28 28 H 1.09000 * 109.47483 * 300.00248 * 14 13 2 29 29 H 1.09007 * 109.47229 * 60.00371 * 14 13 2 30 30 H 1.07993 * 119.99400 * 359.97438 * 16 15 14 31 31 H 1.07999 * 119.98051 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.99278 * 179.97438 * 18 17 16 33 33 H 1.07993 * 120.00506 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.5876 -1.7663 -3.6462 11 1 6.4852 0.3694 -2.5020 12 1 6.6836 -1.6824 -1.2246 13 16 2.1347 -0.8553 1.4810 14 6 1.5665 0.2150 2.8309 15 6 1.9974 -0.3699 4.1512 16 6 3.2182 -0.0196 4.6970 17 6 3.6138 -0.5564 5.9077 18 6 2.7886 -1.4436 6.5738 19 6 1.5675 -1.7937 6.0297 20 6 1.1690 -1.2531 4.8199 21 17 -0.3677 -1.6875 4.1388 22 1 -0.3633 0.5138 0.8900 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.6054 -0.2616 -2.1370 26 1 1.7516 -1.7714 -1.2057 27 1 2.6101 -1.9094 -3.2568 28 1 2.0002 1.2082 2.7142 29 1 0.4792 0.2879 2.8038 30 1 3.8633 0.6730 4.1769 31 1 4.5678 -0.2827 6.3335 32 1 3.0984 -1.8630 7.5196 33 1 0.9229 -2.4864 6.5503 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413005175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:05:08 Heat of formation + Delta-G solvation = -8.051422 kcal Electronic energy + Delta-G solvation = -15676.575042 eV Core-core repulsion = 13046.287932 eV Total energy + Delta-G solvation = -2630.287110 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 270.054 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.43081 -36.41680 -34.76837 -32.95826 -32.06108 -30.80968 -27.47381 -26.65470 -23.07363 -22.79170 -21.81514 -20.64294 -17.19332 -16.76226 -15.84647 -15.68298 -15.33424 -14.72029 -13.95832 -13.74175 -13.58135 -13.36720 -13.20296 -12.93449 -12.66629 -11.78720 -11.69663 -11.54243 -11.43046 -11.21835 -11.11918 -10.86935 -10.72407 -10.46596 -10.11340 -9.83575 -9.19397 -8.92027 -8.62800 -8.51709 -8.28486 -6.91311 -6.30590 -3.99316 0.96300 1.13296 2.13952 2.40550 3.29212 3.47514 3.51031 3.64163 3.68728 4.57117 4.59207 4.65355 4.84178 5.10394 5.21976 5.41404 5.46253 5.46323 5.58925 5.67602 5.72910 5.83945 5.92070 6.09438 6.25397 6.28515 6.33389 6.51603 6.60470 6.68728 7.22477 7.38116 8.19760 8.52757 8.91473 9.70752 11.08965 Molecular weight = 270.05amu Principal moments of inertia in cm(-1) A = 0.021884 B = 0.005254 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.190093 B = 5327.644002 C = 6189.615590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.041 4.041 3 H 0.074 0.926 4 C 0.027 3.973 5 C -0.592 4.592 6 H 0.057 0.943 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 S -0.207 6.207 14 C -0.078 4.078 15 C -0.049 4.049 16 C -0.092 4.092 17 C -0.115 4.115 18 C -0.112 4.112 19 C -0.113 4.113 20 C -0.024 4.024 21 Cl -0.063 7.063 22 H 0.042 0.958 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.021 0.979 26 H 0.017 0.983 27 H 0.267 0.733 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.887 3.495 19.159 20.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 H 0.092 0.908 4 C -0.011 4.011 5 C -0.631 4.631 6 H 0.075 0.925 7 C -0.188 4.188 8 N -0.551 5.551 9 Si 0.896 3.104 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.213 1.213 13 S 0.023 5.977 14 C -0.225 4.225 15 C -0.051 4.051 16 C -0.112 4.112 17 C -0.133 4.133 18 C -0.132 4.132 19 C -0.131 4.131 20 C -0.052 4.052 21 Cl -0.034 7.034 22 H 0.061 0.939 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.107 0.893 30 H 0.152 0.848 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.130 2.092 18.208 18.593 hybrid contribution -2.193 1.536 0.751 2.781 sum -5.323 3.628 18.959 20.024 Atomic orbital electron populations 1.22126 0.95370 1.02253 1.00687 1.23243 0.95866 1.01433 0.96394 0.90753 1.19118 0.97553 0.95012 0.89411 1.22032 0.91224 1.38610 1.11189 0.92508 1.25800 1.06841 0.93494 0.92686 1.70793 1.10221 1.39793 1.34340 0.83564 0.74544 0.76204 0.76115 1.20899 1.21519 1.21327 1.87429 1.74990 1.36835 0.98474 1.22436 1.04142 1.01662 0.94238 1.19212 0.94374 0.96782 0.94709 1.21078 0.94757 0.99943 0.95448 1.21222 0.99846 0.97130 0.95127 1.21088 0.93762 0.98104 1.00199 1.21004 0.97386 1.00380 0.94373 1.20815 0.89130 0.99759 0.95537 1.98369 1.28191 1.91816 1.85004 0.93851 0.92323 0.91965 0.96062 0.96524 0.92267 0.89580 0.89333 0.84795 0.85337 0.85254 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.10 37.16 0.34 -2.17 16 2 C -0.04 -0.85 2.77 -26.73 -0.07 -0.92 16 3 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 4 C 0.03 0.69 3.76 -27.88 -0.10 0.59 16 5 C -0.59 -16.82 8.53 -34.44 -0.29 -17.12 16 6 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 7 C 0.02 0.44 5.46 -17.82 -0.10 0.34 16 8 N -0.91 -28.32 13.65 55.43 0.76 -27.56 16 9 Si 1.07 25.84 29.90 -169.99 -5.08 20.75 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 S -0.21 -4.15 20.44 -107.50 -2.20 -6.35 16 14 C -0.08 -1.19 5.37 36.01 0.19 -1.00 16 15 C -0.05 -0.69 5.14 -104.59 -0.54 -1.23 16 16 C -0.09 -1.15 9.70 -39.58 -0.38 -1.54 16 17 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 18 C -0.11 -1.11 10.05 -39.59 -0.40 -1.51 16 19 C -0.11 -1.26 9.83 -39.55 -0.39 -1.65 16 20 C -0.02 -0.32 6.31 -39.50 -0.25 -0.57 16 21 Cl -0.06 -0.85 27.29 -51.86 -1.42 -2.26 16 22 H 0.04 0.65 6.92 -51.93 -0.36 0.29 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.02 0.56 8.01 -51.93 -0.42 0.15 16 26 H 0.02 0.46 8.00 -51.93 -0.42 0.04 16 27 H 0.27 8.22 7.22 -40.82 -0.29 7.93 16 28 H 0.09 1.23 8.09 -51.92 -0.42 0.81 16 29 H 0.09 1.30 5.89 -51.92 -0.31 1.00 16 30 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -31.36 307.08 -10.07 -41.43 By element: Atomic # 1 Polarization: 2.09 SS G_CDS: -4.37 Total: -2.28 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -2.39 Total: -28.36 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.76 Total: -27.56 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.08 Total: 20.75 kcal Atomic # 16 Polarization: -4.15 SS G_CDS: -2.20 Total: -6.35 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.42 Total: -2.26 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.36 -10.07 -41.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413005175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.381 kcal (2) G-P(sol) polarization free energy of solvation -31.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds